LOCUS BC047608 4076 bp mRNA linear HUM 15-JUL-2006 DEFINITION Homo sapiens cadherin 12, type 2 (N-cadherin 2), mRNA (cDNA clone MGC:50597 IMAGE:5751948), complete cds. ACCESSION BC047608 VERSION BC047608.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 4076) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 4076) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (03-MAR-2003) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Life Technologies, Inc. cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Sequencing Group at the Stanford Human Genome Center, Stanford University School of Medicine, Stanford, CA 94305 Web site: http://www-shgc.stanford.edu Contact: (Dickson, Mark) mcd@paxil.stanford.edu Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, R. M. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 88 Row: n Column: 8 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 16445392. FEATURES Location/Qualifiers source 1..4076 /db_xref="H-InvDB:HIT000053182" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:50597 IMAGE:5751948" /tissue_type="Brain, Lung, Testis, adult, pooled whole" /clone_lib="NIH_MGC_115" /lab_host="DH10B" /note="Vector: pCMV-SPORT6" gene 1..4076 /gene="CDH12" /gene_synonym="CDHB" /db_xref="GeneID:1010" /db_xref="HGNC:HGNC:1751" /db_xref="MIM:600562" CDS 793..3177 /gene="CDH12" /gene_synonym="CDHB" /codon_start=1 /product="cadherin 12, type 2 (N-cadherin 2)" /protein_id="AAH47608.1" /db_xref="GeneID:1010" /db_xref="HGNC:HGNC:1751" /db_xref="MIM:600562" /translation="MLTRNCLSLLLWVLFDGGLLTPLQPQPQQTLATEPRENVIHLPG QRSHFQRVKRGWVWNQFFVLEEYVGSEPQYVGKLHSDLDKGEGTVKYTLSGDGAGTVF TIDETTGDIHAIRSLDREEKPFYTLRAQAVDIETRKPLEPESEFIIKVQDINDNEPKF LDGPYVATVPEMSPVGAYVLQVKATDADDPTYGNSARVVYSILQGQPYFSIDPKTGVI RTALPNMDREVKEQYQVLIQAKDMGGQLGGLAGTTIVNITLTDVNDNPPRFPKSIFHL KVPESSPIGSAIGRIRAVDPDFGQNAEIEYNIVPGDGGNLFDIVTDEDTQEGVIKLKK PLDFETKKAYTFKVEASNLHLDHRFHSAGPFKDTATVKISVLDVDEPPVFSKPLYTME VYEDTPVGTIIGAVTAQDLDVGSSAVRYFIDWKSDGDSYFTIDGNEGTIATNELLDRE STAQYNFSIIASKVSNPLLTSKVNILINVLDVNEFPPEISVPYETAVCENAKPGQIIQ IVSAADRDLSPAGQQFSFRLSPEAAIKPNFTVRDFRNNTAGIETRRNGYSRRQQELYF LPVVIEDSSYPVQSSTNTMTIRVCRCDSDGTILSCNVEAIFLPVGLSTGALIAILLCI VILLAIVVLYVALRRQKKKDTLMTSKEDIRDNVIHYDDEGGGEEDTQAFDIGALRNPK VIEENKIRRDIKPDSLCLPRQRPPMEDNTDIRDFIHQRLQENDVDPTAPPYDSLATYA YEGSGSVAESLSSIDSLTTEADQDYDYLTDWGPRFKVLADMFGEEESYNPDKVT" BASE COUNT 1296 a 855 c 873 g 1052 t ORIGIN 1 taaatgtgga gggagccaca gagaggggtc caggcttttc tgagaagaga ggcagcctct 61 tccaggaaga aagtggtgtc tactggctgc ccggcctgga gaaccttctt tgaatgaaaa 121 cggacaaaat gcaaagcagt gtgttggcac agtgatttgg aaaggggaaa cagaagagaa 181 gggtctcacc ttccgcgcaa ggctgagctg ttggcaccct gctgcggccg tcggtgctgc 241 tgctcctgca gctgcctttt ctgccatcag ctttgttacc taacagcttg gctcttttgg 301 gaaatataga caagctggaa cccaggagca gttgggagtt ttaaagaatg ccagcctttt 361 taaagctttg atgtccagtg ctatagaatc aagttactgt ggaggtcaaa acaatttgag 421 atacataagc tggccttaga aaataaattg cctctaactt acagtgagga gctcaacata 481 acagggaaaa ggagcacagg atgcagctac ttggagggtg ttgattgaaa acttcgatct 541 ccccacccca ttcacggttg atttgacgga tttctcacct tgttcacaga gaaaatttca 601 attaaggccc ctttagatgg aatataatac agcagaagcc ttttcatcaa aaggattaat 661 gcctgcatca tcatttctgc aataaaacaa gaagctaagt ggtggaggcc acagacacct 721 caaacctgga ttccacaatt ctacgttaag tgttggagtt tttattactc tgctgtagga 781 aagcctttgc caatgcttac aaggaactgt ttatccctgc ttctctgggt tctgtttgat 841 ggaggtctcc taacaccact acaaccacag ccacagcaga ctttagccac agagccaaga 901 gaaaatgtta tccatctgcc aggacaacgg tcacatttcc aacgtgttaa acgtggctgg 961 gtatggaatc aattttttgt gctggaagaa tacgtgggct ccgagcctca gtatgtggga 1021 aagctccatt ccgacttaga caagggagag ggcactgtga aatacaccct ctcaggagat 1081 ggcgctggca ccgtttttac cattgatgaa accacagggg acattcatgc aataaggagc 1141 ctagatagag aagagaaacc tttctacact cttcgtgctc aggctgtgga catagaaacc 1201 agaaagcccc tggagcctga atcagaattc atcatcaaag tgcaggatat taatgataat 1261 gagccaaagt ttttggatgg accttatgtt gctactgttc cagaaatgtc tcctgtgggt 1321 gcatatgtac tccaggtcaa ggccacagat gcagatgacc cgacctatgg aaacagtgcc 1381 agagtcgttt acagcattct tcagggacaa ccttatttct ctattgatcc caagacaggt 1441 gttattagaa cagctttgcc aaacatggac agagaagtca aagaacaata tcaagtactc 1501 atccaagcca aggatatggg aggacagctt ggaggattag ccggaacaac aatagtcaac 1561 atcactctca ccgatgtcaa tgacaatcca cctcgattcc ccaaaagcat cttccacttg 1621 aaagttcctg agtcttcccc tattggttca gctattggaa gaataagagc tgtggatcct 1681 gattttggac aaaatgcaga aattgaatac aatattgttc caggagatgg gggaaatttg 1741 tttgacatcg tcacagatga ggatacacaa gagggagtca tcaaattgaa aaagccttta 1801 gattttgaaa caaagaaggc atacactttc aaagttgagg cttccaacct tcaccttgac 1861 caccggtttc actcggcggg ccctttcaaa gacacagcta cggtgaagat cagcgtgctg 1921 gacgtagatg agccaccggt tttcagcaag ccgctctaca ccatggaggt ttatgaagac 1981 actccggtag ggaccatcat tggcgctgtc actgctcaag acctggatgt aggcagcagt 2041 gctgttaggt acttcataga ttggaagagt gatggggaca gctactttac aatagatgga 2101 aatgaaggaa ccatcgccac taatgaatta ctagacagag aaagcactgc gcagtataat 2161 ttctccataa ttgcgagtaa agttagtaac cctttattga ccagcaaagt caatatactg 2221 attaatgtct tagatgtaaa tgaatttcct ccagaaatat ctgtgccata tgagacagcc 2281 gtgtgtgaaa atgccaagcc aggacagata attcagatag tcagtgctgc agaccgagat 2341 ctttcacctg ctgggcaaca attctccttt agattatcac ctgaggctgc tatcaaacca 2401 aattttacag ttcgtgactt cagaaacaac acagcgggga ttgaaacccg aagaaatgga 2461 tacagccgca ggcagcaaga gttgtatttc ctccctgttg taatagaaga cagcagctac 2521 cctgtccaga gcagcacaaa cacaatgact attcgagtct gtagatgtga ctctgatggc 2581 accatcctgt cttgtaatgt ggaagcaatt tttctacctg taggacttag cactggggcg 2641 ttgattgcaa ttctactatg cattgttata ctcttagcca tagttgtact gtatgtagca 2701 ctgcgaaggc agaagaaaaa agacaccctg atgacctcta aagaagacat cagagacaac 2761 gtcatccatt acgatgatga aggaggtggg gaggaagata cccaggcttt cgacatcggg 2821 gctctgagaa acccaaaagt gattgaggag aacaaaattc gcagggatat aaaaccagac 2881 tctctctgtt tacctcgtca gagaccaccc atggaagata acacagacat aagggatttc 2941 attcatcaaa ggctacagga aaatgatgtg gatccaactg ccccaccata cgattcactg 3001 gccacatatg cctacgaagg gagtgggtcc gtggcagagt ccctcagctc tatagactct 3061 ctcaccacag aagccgacca ggactatgac tatctgacag actggggacc ccgctttaaa 3121 gtcttggcag acatgtttgg cgaagaagag agttataacc ctgataaagt cacttaaggg 3181 agtcgtggag gctaaaatac aaccgagagg ggagattttt aaaaaagaaa aagaaacaca 3241 aatattaata gaaatctctc tcacacacac acacacacac aaacacacac acacacacac 3301 tctgggacaa gattcctttg attacctggt ttctagtaag ttactaaatt aatcatattg 3361 tcagttttgg tttattctgc caacaagaga tacatcctat aatgtgtact tgctttgttt 3421 tgttgttttg ttttttcaca atcacactga gacaagctca ggcctattca atacaattta 3481 ctgacatgac aacctagaac gaagatagct atgtggcatc acggtggaag agtgttagat 3541 ttttcttaat ttcactaaag tgcctattga aactcttatc atttaaagtg gtgtacagta 3601 cactctgctg tgatggtatt gcgggattca gagataaaga cataaaacaa agacaccgtc 3661 tttatgtcaa gaagcaatag cgacactctg actctcctca ttccttttga gaacaaaaga 3721 agaacacttt ctgatctcca ccttcttcta attcaaaagg ttttcttttt cttttttaaa 3781 ctgtatgcta aaacgtattt gtttatccta tcctttcaga aaattgaaat aaatatgaaa 3841 atatcaagtt caatatgtaa gtcccaaatt ctagaaacaa tgtttgatct taacattagt 3901 tcacattaaa gctgttcatt aaaatgttac tttcttttcc aaaaaaaaaa gaaagaaaaa 3961 aaagaaaaaa tattcctctt tataaagaga ggcctcaggg ctcaaattac acattaaaat 4021 aaatattggt tttgcttaat attgcaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaa //