LOCUS BC047581 3271 bp mRNA linear HUM 28-JUL-2005
DEFINITION Homo sapiens PAP associated domain containing 4, mRNA (cDNA clone
MGC:48402 IMAGE:4824607), complete cds.
ACCESSION BC047581
VERSION BC047581.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3271)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3271)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (03-MAR-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 90 Row: g Column: 20
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 31341107.
FEATURES Location/Qualifiers
source 1..3271
/db_xref="H-InvDB:HIT000053174"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:48402 IMAGE:4824607"
/tissue_type="Testis"
/clone_lib="NIH_MGC_97"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..3271
/gene="PAPD4"
/gene_synonym="FLJ38499"
/db_xref="GeneID:167153"
CDS 398..1840
/gene="PAPD4"
/gene_synonym="FLJ38499"
/codon_start=1
/product="PAPD4 protein"
/protein_id="AAH47581.1"
/db_xref="GeneID:167153"
/translation="MFPNSILGRPPFTPNHQQHNNFFTLSPTVYSHQQLIDAQFNFQN
ADLSRAVSLQQLTYGNVSPIQTSASPLFRGRKRLSDEKNLPLDGKRQRFHSPHQEPTV
VNQIVPLSGERRYSMPPLFHTHYVPDIVRCVPPFREIAFLEPREITLPEAKDKLSQQI
LELFETCQQQISDLKKKELCRTQLQREIQLLFPQSRLFLVGSSLNGFGTRSSDGDLCL
VVKEEPVNQKTEARHILTLVHKHFCTRLSGYIERPQLIRAKVPIVKFRDKVSCVEFDL
NVNNIVGIRNTFLLRTYAYLENRVRPLVLVIKKWASHHQINDASRGTLSSYSLVLMVL
HYLQTLPEPILPSLQKIYPESFSPAIQLHLVHQAPCNVPPYLSKNESNLGDLLLGFLK
YYATEFDWNSQMISVREAKAIPRPDGIEWRNKYICVEEPFDGTNTARAVHEKQKFDMI
KDQFLKSWHRLKNKRDLNSILPVRAAVLKR"
BASE COUNT 1032 a 604 c 601 g 1034 t
ORIGIN
1 atccggggtc acgtcggtct tccgggtgtc tttgacaggg ttttctacgc cgctttttcg
61 gcgacttttt gctcttccgc tttttgccac cgcccccaac cttctatatc cttgcagccc
121 ctaccttttc ttgtgttgct cctcccctgg cagccgtgag gggggttaga tctcagccgg
181 agccggagct gggcctagct gtcccacggg ccaccactac ctcctttggt tcgggagaaa
241 gctacgacca agtacgccca gctcgggcct tagaacttct gaacgggcag tgcgggacca
301 aaagaggaag atagtcttgg gacccttgca tggtgtttca aagggtggtg aagaactaag
361 gtagaagaat acatgttcac ttccagtgaa caagagcatg ttcccaaact caattttggg
421 tcgcccaccc ttcactccaa atcatcaaca acataataac ttctttaccc tgtcacctac
481 tgtttattca caccagcagc ttatagatgc acaattcaac tttcagaatg cagacttgtc
541 tagagctgtg tcattacagc agctgacata tggaaatgtc agtccaatac agacctcagc
601 ttccccatta tttcgaggaa ggaagagatt aagcgatgaa aaaaaccttc ctcttgacgg
661 taaacggcaa cgtttccatt caccccacca agagccaact gtagttaacc agatagtgcc
721 tttatcaggt gaacgaagat actcaatgcc accattgttt catacacatt atgtaccaga
781 tatagtcaga tgtgttccac cttttcgaga aattgcattt ttagaaccta gagaaatcac
841 actgcctgag gccaaagata agttgagtca gcagatactg gagttatttg aaacatgtca
901 gcagcaaata agtgatttaa agaagaaaga actctgtcga acacagctgc agagagaaat
961 tcagctgtta tttccacaaa gcagactttt tttggttggg tcctctttaa atggatttgg
1021 tacccggagc agtgatggtg atttatgcct agttgttaag gaagaaccag taaatcagaa
1081 gactgaagca cggcatatac tcaccttagt ccataaacac ttctgtacta gactttcggg
1141 ctacattgag agacctcagc tgattcgagc aaaagtgcca attgtgaagt tcagggataa
1201 agtcagttgt gtggagtttg acttgaatgt aaacaatatt gttggaataa gaaacacatt
1261 ccttctcaga acttatgcat accttgaaaa tcgagttcgt ccgttagtgc tggtgattaa
1321 gaagtgggca agtcaccatc agataaatga tgccagtcgt ggtactttaa gcagctatag
1381 tcttgtattg atggttttgc actatttaca aaccctacct gaacccatcc ttccatccct
1441 ccaaaaaatt tacccagagt cttttagtcc tgctatacag ctgcaccttg tacatcaagc
1501 tccatgtaat gttcctcctt acctctcaaa gaatgaatca aaccttgggg acctcttact
1561 gggctttctt aaatattatg ctacagaatt tgactggaat agtcaaatga tttcagttcg
1621 tgaagccaaa gccattccaa ggcctgatgg tattgaatgg agaaataaat acatctgtgt
1681 agaagaacct tttgatggaa caaatacagc cagagcagtg cacgaaaagc agaaatttga
1741 tatgatcaag gatcaatttt taaagtcatg gcacagattg aaaaacaaga gagatttgaa
1801 cagtatacta cctgtaagag ctgctgtcct gaaaagataa ctggcctcta tttcttaata
1861 aattcttcca agaaataaag aacaatagtt tcatcataat acattatgtt tacctccatc
1921 atagttgctt ttttcatagt tcttgttttc atgttttatt tttaaaaaga catataaaga
1981 ttgcatattt tattatgaca tttcctaata aacccctttg atttaaaaat gtatttttaa
2041 aaatgtttac attgatgatg agtaatattg catgtgtttt caggtgatca gataaaatat
2101 attttgggaa attaactgaa caaataaaaa gtttttgata taacttcaat taattgtacc
2161 acatgctaat cctgaagaga tgtgtagaat tttggaaagg gtctaattca tacatgctta
2221 aagtataacc tacgttagat agtttgttgt caaagtctgt tctagtaaag tgaagattca
2281 agtcagttgt tcagttactt gaagcaaaac gaaatctttc atttcagtca aatcactgca
2341 gtcatgaaat actgaacaat tgccttaagt ctttgcttga ctcactggga tagactgagg
2401 ctttgggtgt gtctgtatta gcatttcatt agtacttcac atgcttttga tgtactcttg
2461 agattgcttt aaattttgta ttgaaacaac aatacatttt gcactgtagt aatgggagca
2521 ctaactctta caacagttag tgaatcgttt taaagaatca gttcagtgta gacattttga
2581 aaagattgtt tcctgtgctt tacgatagct tagtgcaatg tgcacttctg ttttacttgc
2641 cattttcctg ctctgttttc tctgtgacat gaagcaacag aaactgagat caaagttaag
2701 attatatcct gtttgtagta tcagatattt ttctgtgtac aattatagga ttgtaatcta
2761 aactggaatt tttaggcagt aagtcaccac aaaatgtttt agataagaca caataaaatt
2821 attataaata aaagcttaat gtttgtaaaa aatctctttt ttagtatttc ttttttcaca
2881 tgaaagaagt ggtggctgct aaaaaaaaag ctacagtgtt tattaagggt ctttttgatt
2941 tatgtaaata tttgtaaatt ggtcagtgcc tgtaaattta aatataaaaa gtaaccttga
3001 aaacagtttt aactttttca aaagaactat gtccaacatt ttttagacct gctgtagtac
3061 agttttgtac ctctaacgta tttttttttt gcagaccaaa tgctaaaact tttgcttttc
3121 tttgacttgt aaaaggtgca cattttcatt ttcttcctta agttcaaatt tttgtatgat
3181 gtcaaatgca ataaaattta tatatggaca ttgttaaaga aaaaaaaaaa aaaaaaaaaa
3241 aaaaaaagaa aaaacaaaaa aaaaaaaaaa a
//