LOCUS BC047447 1953 bp mRNA linear HUM 26-JUN-2007
DEFINITION Homo sapiens Na+/H+ exchanger domain containing 2, mRNA (cDNA clone
MGC:48602 IMAGE:5295722), complete cds.
ACCESSION BC047447
VERSION BC047447.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1953)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1953)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (28-FEB-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 91 Row: i Column: 15
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 47271478.
FEATURES Location/Qualifiers
source 1..1953
/db_xref="H-InvDB:HIT000053135"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:48602 IMAGE:5295722"
/tissue_type="Testis"
/clone_lib="NIH_MGC_97"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..1953
/gene="NHEDC2"
/db_xref="GeneID:133308"
/db_xref="HGNC:HGNC:25143"
CDS 163..1776
/gene="NHEDC2"
/codon_start=1
/product="NHEDC2 protein"
/protein_id="AAH47447.2"
/db_xref="GeneID:133308"
/db_xref="HGNC:HGNC:25143"
/translation="MGDEDKRITYEDSEPSTGMNYTPSMHQEAQEETVMKLKGIDANE
PTEGSILLKSSEKKLQETPTEANHVQRLRQMLACPPHGLLDRVITNVTIIVLLWAVVW
SITGSECLPGGNLFGIIILFYCAIIGGKLLGLIKLPTLPPLPSLLGMLLAGFLIRNIP
VINDNVQIKHKWSSSLRSIALSIILVRAGLGLDSKALKKLKGVCVRLSMGPCIVEACT
SALLAHYLLGLPWQWGFILGFVLGAVSPAVVVPSMLLLQGGGYGVEKGVPTLLMAAGS
FDDILAITGFNTCLGIAFSTGSTVFNVLRGVLEVVIGVATGSVLGFFIQYFPSRDQDK
LVCKRTFLVLGLSVLAVFSSVHFGFPGSGGLCTLVMAFLAGMGWTSEKAEVEKIIAVA
WDIFQPLLFGLIGAEVSIASLRPETVGLCVATVGIAVLIRILTTFLMVCFAGFNLKEK
IFISFAWLPKATVQAAIGSVALDTARSHGEKQLEDYGMDVLTVAFLSILITAPIGSLL
IGLLGPRLLQKVEHQNKDEEVQGETSVQV"
BASE COUNT 513 a 412 c 467 g 561 t
ORIGIN
1 gaagatgcgc gaatcgggaa ccccagagcg cggtggctag accgggctcc gccgcctccc
61 ccacagcccc tttcctaatc gttcagacgg agcctggtcg acttcgccgg agactgccag
121 atctcgttcc tcttccctgt gtcatcttct taattataaa taatggggga tgaagataaa
181 agaattacat atgaagattc agaaccatcc acaggaatga attacacgcc ctccatgcat
241 caagaagcac aggaggagac agttatgaag ctcaaaggta tagatgcaaa tgaaccaaca
301 gaaggaagta ttcttttgaa aagcagtgaa aaaaagctac aagaaacacc aactgaagca
361 aatcacgtac aaagactgag acaaatgctg gcttgccctc cacatggttt actggacagg
421 gtcataacaa atgttaccat cattgttctt ctgtgggctg tagtttggtc aattactggc
481 agtgaatgtc ttcctggagg aaacctattt ggaattataa tcctattcta ttgtgccatc
541 attggtggta aacttttggg gcttattaag ttacctacat tgcctccact gccttctctt
601 cttggcatgc tgcttgcagg gtttctcatc agaaatatcc cagtcatcaa cgataatgtg
661 cagatcaagc acaagtggtc ttcctctttg agaagcatag ccctgtctat cattctggtt
721 cgtgctggcc ttggtctgga ttcaaaggcc ctgaagaagt taaagggcgt ttgtgtaaga
781 ctgtccatgg gtccctgtat tgtggaggcg tgcacatctg ctcttcttgc ccattacctg
841 ctgggtttac catggcaatg gggatttata ctgggttttg ttttaggtgc tgtatctcca
901 gctgttgtgg tgccttcaat gctccttttg cagggaggag gctatggtgt tgagaagggt
961 gtcccaacct tgctcatggc agctggcagc ttcgatgaca ttctggccat cactggcttc
1021 aacacatgct tgggcatagc cttttccaca ggctctactg tctttaatgt cctcagagga
1081 gttttggagg tggtaattgg tgtggcaact ggatctgttc ttggattttt cattcagtac
1141 tttccaagcc gtgaccagga caaacttgtg tgtaagagaa cattccttgt gttggggttg
1201 tctgtgctag ctgtgttcag cagtgtgcat tttggtttcc ctggatcagg aggactgtgc
1261 acgttggtca tggctttcct tgcaggcatg ggatggacca gcgaaaaggc agaggttgaa
1321 aagataattg cagttgcctg ggacattttt cagccccttc tttttggact aattggagca
1381 gaggtatcta ttgcatctct cagaccagaa actgtaggcc tttgtgttgc caccgtaggc
1441 attgcagtat tgatacgaat tttgactaca tttctgatgg tgtgttttgc tggttttaac
1501 ttaaaagaaa agatatttat ttcttttgca tggcttccaa aggccacagt tcaggctgca
1561 ataggatctg tggctttgga cacagcaagg tcacatggag agaaacaatt agaagactat
1621 ggaatggatg tgttgacagt ggcatttttg tccatcctca tcacagcccc aattggaagt
1681 ctgcttattg gtttactggg ccccaggctt ctgcagaaag ttgaacatca aaataaagat
1741 gaagaagttc aaggagagac ttctgtgcaa gtttagagga agcgcggatt ctattactgg
1801 aaactttggg actgaaaggc caaagcttct gggcccacca tcaacgcagc tccgctttca
1861 tttctttcac atacaacttt ccacataaga tttcatgcgg aaaaaaaaaa aaaaaaactc
1921 acaaaggttt tatactgaaa aaaaaaaaaa aaa
//