LOCUS BC047406 1895 bp mRNA linear HUM 17-JUL-2006
DEFINITION Homo sapiens HORMA domain containing 1, mRNA (cDNA clone MGC:48336
IMAGE:5298160), complete cds.
ACCESSION BC047406
VERSION BC047406.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1895)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1895)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (28-FEB-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 91 Row: j Column: 2
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 31542506.
FEATURES Location/Qualifiers
source 1..1895
/db_xref="H-InvDB:HIT000053124"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:48336 IMAGE:5298160"
/tissue_type="Testis"
/clone_lib="NIH_MGC_97"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..1895
/gene="HORMAD1"
/gene_synonym="DKFZP434A1315"
/gene_synonym="NOHMA"
/gene_synonym="RP11-363I22.1"
/db_xref="GeneID:84072"
/db_xref="HGNC:HGNC:25245"
/db_xref="MIM:609824"
CDS 107..1291
/gene="HORMAD1"
/gene_synonym="DKFZP434A1315"
/gene_synonym="NOHMA"
/gene_synonym="RP11-363I22.1"
/codon_start=1
/product="HORMA domain containing 1"
/protein_id="AAH47406.1"
/db_xref="GeneID:84072"
/db_xref="HGNC:HGNC:25245"
/db_xref="MIM:609824"
/translation="MATAQLQRTPMSALVFPNKISTEHQSLVLVKRLLAVSVSCITYL
RGIFPECAYGTRYLDDLCVKILREDKNCPGSTQLVKWMLGCYDALQKKYLRMVVLAVY
TNPEDPQTISECYQFKFKYTNNGPLMDFISKNQSNESSMLSTDTKKASILLIRKIYIL
MQNLGPLPNDVCLTMKLFYYDEVTPPDYQPPGFKDGDCEGVIFEGEPMYLNVGEVSTP
FHIFKVKVTTERERMENIDSTILSPKQIKTPFQKILRDKDVEDEQEHYTSDDLDIETK
MEEQEKNPASSELEEPSLVCEEDEIMRSKESPDLSISHSQVEQLVNKTSELDMSESKT
RSGKVFQNKMANGNQPVKSSKENRKRSQHESGRIVLHHFDSSSQESVPKRRKFSEPKE
HI"
BASE COUNT 665 a 321 c 336 g 573 t
ORIGIN
1 atgcgcgtcg ggcacagcgc gtgcagcctc gtgcagctct tctggtctcc ggcgcccgcc
61 cctcagacgt aatgttgaat taaagaaaat actttatcag aagaagatgg ccactgccca
121 gttgcagagg actcccatga gtgcactggt atttcccaat aagatatcaa ctgaacacca
181 gtctttggtg ttagtgaaga ggcttctagc agtttcagta tcctgtatca cgtatttgag
241 gggaatattc ccagaatgcg cttatggaac aagatatcta gatgatcttt gtgtcaaaat
301 actgagagaa gataaaaatt gcccaggatc tacacagtta gtgaaatgga tgctaggatg
361 ttatgatgct ttacagaaaa aatatctaag gatggttgtt ctagctgtat acacaaaccc
421 agaagatcct cagacaattt cagaatgtta ccaattcaaa ttcaaataca ccaataatgg
481 accactcatg gacttcataa gtaaaaacca aagcaacgaa tctagcatgt tgtctactga
541 caccaagaaa gcaagcattc tcctcattcg caagatttat atcctaatgc aaaatctggg
601 gcctttacct aatgatgttt gtttgaccat gaaacttttt tactatgatg aagttacacc
661 cccagattac cagcctcccg gttttaagga tggtgattgt gaaggagtta tatttgaagg
721 ggaacctatg tatttaaatg tgggagaagt ctcaacacct tttcacatct tcaaagtaaa
781 agtgaccact gagagagaac gaatggaaaa tattgactca actatactat caccaaaaca
841 aataaaaaca ccatttcaaa aaatcctgag ggacaaagat gtagaagatg aacaggagca
901 ttatacaagt gatgatttgg acattgaaac taaaatggaa gaacaggaaa aaaaccctgc
961 atcttctgaa cttgaagaac caagtttagt ttgtgaggaa gatgaaatta tgaggtctaa
1021 agaaagtcca gatctttcta tttctcattc tcaggttgag cagttagtca ataaaacatc
1081 tgaacttgat atgtctgaaa gcaaaacaag aagtggaaaa gtctttcaga ataaaatggc
1141 aaatggaaat caaccagtaa aatcttccaa agaaaatcgg aagagaagtc aacatgaatc
1201 tgggagaata gtcctccatc actttgattc ttctagtcaa gagtcagtgc caaaaaggag
1261 aaagtttagt gaaccaaagg aacatatata aaaattattt ttgttctgca ggcttgcaga
1321 gttcttctca ccatttaaac tgaaggaccc tatattatat ttccctaact ctgaagatgt
1381 atatgtagtt taaagcagtt tgtacactaa aactaagttt ttggctgact gtcatattgt
1441 ggtccttaat cttgagataa atccaataga acttttgaat aaaagcaaaa gtacaaatgt
1501 cataattgat tcggtaataa gtaaaatttc aaaattgatt ttgttcatta cctacttaat
1561 atttccttta aatatatact aactgttaag gccctctaat gccatttttc taaacagtaa
1621 tgtttacttt ggtattaaaa tttggtatgg attcactttt tacttatgtt aaaattatac
1681 catttaactg gctcttttgt cattgtgctg ttattaaaac aatgttcttc aatattttga
1741 cataatgtat taacatttta atatataatg tacaatttaa gaattggtgc tttaccttta
1801 ctatgctttt ttttacagga caaaaagact gatttttaaa gtatggcatt ttttgcagca
1861 taaataaaat attgttcagc aaaaaaaaaa aaaaa
//