LOCUS BC047336 1343 bp mRNA linear HUM 19-MAR-2007
DEFINITION Homo sapiens chitinase, acidic, mRNA (cDNA clone MGC:54146
IMAGE:5185486), complete cds.
ACCESSION BC047336
VERSION BC047336.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1343)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1343)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (28-FEB-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Life Technologies, Inc.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 93 Row: h Column: 21
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 42542397.
FEATURES Location/Qualifiers
source 1..1343
/db_xref="H-InvDB:HIT000098529"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:54146 IMAGE:5185486"
/tissue_type="Colon, Kidney, Stomach, adult, whole pooled"
/clone_lib="NIH_MGC_116"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1343
/gene="CHIA"
/gene_synonym="AMCase"
/gene_synonym="CHIT2"
/gene_synonym="ECF-L"
/gene_synonym="RP5-1125M8.1"
/gene_synonym="TSA1902"
/db_xref="GeneID:27159"
/db_xref="HGNC:HGNC:17432"
/db_xref="MIM:606080"
CDS 114..1220
/gene="CHIA"
/gene_synonym="AMCase"
/gene_synonym="CHIT2"
/gene_synonym="ECF-L"
/gene_synonym="RP5-1125M8.1"
/gene_synonym="TSA1902"
/codon_start=1
/product="chitinase, acidic"
/protein_id="AAH47336.2"
/db_xref="GeneID:27159"
/db_xref="HGNC:HGNC:17432"
/db_xref="MIM:606080"
/translation="MVSTPENRQTFITSVIKFLRQYEFDGLDFDWEYPGSRGSPPQDK
HLFTVLVQEMREAFEQEAKQINKPRLMVTAAVAAGISNIQSGYEIPQLSQYLDYIHVM
TYDLHGSWEGYTGENSPLYKYPTDTGSNAYLNVDYVMNYWKDNGAPAEKLIVGFPTYG
HNFILSNPSNTGIGAPTSGAGPAGPYAKESGIWAYYEICTFLKNGATQGWDAPQEVPY
AYQGNVWVGYDNIKSFDIKAQWLKHNKFGGAMVWAIDLDDFTGTFCNQGKFPLISTLK
KALGLQSASCTAPAQPIEPITAAPSGSGNGSGSSSSGGSSGGSGFCAVRANGLYPVAN
NRNAFWHCVNGVTYQQNCQAGLVFDTSCDCCNWA"
BASE COUNT 335 a 376 c 329 g 303 t
ORIGIN
1 cttattctcc tcacaggtct tgtccttata ctgaatttgc agctcggaac agccagctga
61 aaactctcct ggccattgga ggctggaact tcgggactgc ccctttcact gccatggttt
121 ctactcctga gaaccgccag actttcatca cctcagtcat caaattcctg cgccagtatg
181 agtttgacgg gctggacttt gactgggagt accctggctc tcgtgggagc cctcctcagg
241 acaagcatct cttcactgtc ctggtgcagg aaatgcgtga agcttttgag caggaggcca
301 agcagatcaa caagcccagg ctgatggtca ctgctgcagt agctgctggc atctccaata
361 tccagtctgg ctatgagatc ccccaactgt cacagtacct ggactacatc catgtcatga
421 cctacgacct ccatggctcc tgggagggct acactggaga gaacagcccc ctctacaaat
481 acccgactga caccggcagc aacgcctacc tcaatgtgga ttatgtcatg aactactgga
541 aggacaatgg agcaccagct gagaagctca tcgttggatt ccctacctat ggacacaact
601 tcatcctgag caacccctcc aacactggaa ttggtgcccc cacctctggt gctggtcctg
661 ctgggcccta tgccaaggag tctgggatct gggcttacta cgagatctgt accttcctga
721 aaaatggagc cactcaggga tgggatgccc ctcaggaagt gccttatgcc tatcagggca
781 atgtgtgggt tggctatgac aacatcaaga gcttcgatat taaggctcaa tggcttaagc
841 acaacaaatt tggaggcgcc atggtctggg ccattgatct ggatgacttc actggcactt
901 tctgcaacca gggcaagttt cccctaatct ccaccctgaa gaaggccctc ggcctgcaga
961 gtgcaagttg cacggctcca gctcagccca ttgagccaat aactgctgct cccagtggca
1021 gcgggaacgg gagcgggagt agcagctctg gaggcagctc gggaggcagt ggattctgtg
1081 ctgtcagagc caacggcctc taccccgtgg caaataacag aaatgccttc tggcactgcg
1141 tgaatggagt cacgtaccag cagaactgcc aggccgggct tgtcttcgac accagctgtg
1201 attgctgcaa ctgggcataa acctgacctg gtctatattc cctagagttc cagtctcttt
1261 tgcttaggac atgttgcccc tacctaaagt cctgcaataa aatcagcagt caaaacaaaa
1321 aaaaaaaaaa aaaaaaaaaa aaa
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