LOCUS BC047244 4050 bp mRNA linear HUM 07-NOV-2006
DEFINITION Homo sapiens neural cell adhesion molecule 1, mRNA (cDNA clone
MGC:47611 IMAGE:5590188), complete cds.
ACCESSION BC047244
VERSION BC047244.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4050)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 4050)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (28-FEB-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Invitrogen
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 82 Row: h Column: 8
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 41281936.
FEATURES Location/Qualifiers
source 1..4050
/db_xref="H-InvDB:HIT000053100"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:47611 IMAGE:5590188"
/tissue_type="Ovary, pooled from 3 adults"
/clone_lib="NIH_MGC_125"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..4050
/gene="NCAM1"
/gene_synonym="CD56"
/gene_synonym="MSK39"
/gene_synonym="NCAM"
/db_xref="GeneID:4684"
/db_xref="HGNC:HGNC:7656"
/db_xref="MIM:116930"
CDS 179..2755
/gene="NCAM1"
/gene_synonym="CD56"
/gene_synonym="MSK39"
/gene_synonym="NCAM"
/codon_start=1
/product="neural cell adhesion molecule 1"
/protein_id="AAH47244.1"
/db_xref="GeneID:4684"
/db_xref="HGNC:HGNC:7656"
/db_xref="MIM:116930"
/translation="MLQTKDLIWTLFFLGTAVSLQVDIVPSQGEISVGESKFFLCQVA
GDAKDKDISWFSPNGEKLTPNQQRISVVWNDDSSSTLTIYNANIDDAGIYKCVVTGED
GSESEATVNVKIFQKLMFKNAPTPQEFREGEDAVIVCDVVSSLPPTIIWKHKGRDVIL
KKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIVNVPPTIQARQ
NIVNATANLGQSVTLVCDAEGFPEPTMSWTKDGEQIEQEEDDEKYIFSDDSSQLTIKK
VDKNDEAEYICIAENKAGEQDATIHLKVFAKPKITYVENQTAMELEEQVTLTCEASGD
PIPSITWRTSTRNISSEEKASWTRPEKQETLDGHMVVRSHARVSSLTLKSIQYTDAGE
YICTASNTIGQDSQSMYLEVQYAPKLQGPVAVYTWEGNQVNITCEVFAYPSATISWFR
DGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILVQAD
TPSSPSIDQVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEAS
MEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQPVQGEPSAPKLEGQMGED
GNSIKVNLIKQDDGGSPIRHYLVRYRALSSEWKPEIRLPSGSDHVMLKSLDWNAEYEV
YVVAENQQGKSKAAHFVFRTSAQPTAIPANGSPTSGLSTGAIVGILIVIFVLLLVVVD
ITCYFLNKCGLFMCIAVNLCGKAGPGAKGKDMEEGKAAFSKDESKEPIVEVRTEEERT
PNHDGGKHTEPNETTPLTEPEKGPVEAKPECQETETKPAPAEVKTVPNDATQTKENEN
KA"
BASE COUNT 1173 a 1025 c 973 g 879 t
ORIGIN
1 gcgcgtgaac gcagctcggc tgccgctggc aggaaacaat tctgcaaaaa taatcatact
61 cagcctggca attgtctgcc cctaggtctg tcgctcagcc gccgtccaca ctcgctgcag
121 gggggggggg cacagaattt accgcggcaa gaacatccct cccagccagc agattacaat
181 gctgcaaact aaggatctca tctggacttt gtttttcctg ggaactgcag tttctctgca
241 ggtggatatt gttcccagcc agggggagat cagcgttgga gagtccaaat tcttcttatg
301 ccaagtggca ggagatgcca aagataaaga catctcctgg ttctccccca atggagaaaa
361 gctcacccca aaccagcagc ggatctcagt ggtgtggaat gatgattcct cctccaccct
421 caccatctat aacgccaaca tcgacgacgc cggcatttac aagtgtgtgg ttacaggcga
481 ggatggcagt gagtcagagg ccaccgtcaa cgtgaagatc tttcagaagc tcatgttcaa
541 gaatgcgcca accccacagg agttccggga gggggaagat gccgtgattg tgtgtgatgt
601 ggtcagctcc ctcccaccaa ccatcatctg gaaacacaaa ggccgagatg tcatcctgaa
661 aaaagatgtc cgattcatag tcctgtccaa caactacctg cagatccggg gcatcaagaa
721 aacagatgag ggcacttatc gctgtgaggg cagaatcctg gcacgggggg agatcaactt
781 caaggacatt caggtcattg tgaatgtgcc acctaccatc caggccaggc agaatattgt
841 gaatgccacc gccaacctcg gccagtccgt caccctggtg tgcgatgccg aaggcttccc
901 agagcccacc atgagctgga caaaggatgg ggaacagata gagcaagagg aagacgatga
961 gaagtacatc ttcagcgacg atagttccca gctgaccatc aaaaaggtgg ataagaacga
1021 cgaggctgag tacatctgca ttgctgagaa caaggctggc gagcaggatg cgaccatcca
1081 cctcaaagtc tttgcaaaac ccaaaatcac atatgtagag aaccagactg ccatggaatt
1141 agaggagcag gtcactctta cctgtgaagc ctccggagac cccattccct ccatcacctg
1201 gaggacttct acccggaaca tcagcagcga agaaaaggct tcgtggactc gaccagagaa
1261 gcaagagact ctggatgggc acatggtggt gcgtagccat gcccgtgtgt cgtcgctgac
1321 cctgaagagc atccagtaca ctgatgccgg agagtacatc tgcaccgcca gcaacaccat
1381 cggccaggac tcccagtcca tgtaccttga agtgcaatat gccccaaagc tacagggccc
1441 tgtggctgtg tacacttggg aggggaacca ggtgaacatc acctgcgagg tatttgccta
1501 tcccagtgcc acgatctcat ggtttcggga tggccagctg ctgccaagct ccaattacag
1561 caatatcaag atctacaaca ccccctctgc cagctatctg gaggtgaccc cagactctga
1621 gaatgatttt gggaactaca actgtactgc agtgaaccgc attgggcagg agtccttgga
1681 attcatcctt gttcaagcag acaccccctc ttcaccatcc atcgaccagg tggagccata
1741 ctccagcaca gcccaggtgc agtttgatga accagaggcc acaggtgggg tgcccatcct
1801 caaatacaaa gctgagtgga gagcagtggg tgaagaagta tggcattcca agtggtatga
1861 tgccaaggaa gccagcatgg agggcatcgt caccatcgtg ggcctgaagc ccgaaacaac
1921 gtacgccgta aggctggcgg cgctcaatgg caaagggctg ggtgagatca gcgcggcctc
1981 cgagttcaag acgcagccag tccaagggga acccagtgca cctaagctcg aagggcagat
2041 gggagaggat ggaaactcta ttaaagtgaa cctgatcaag caggatgacg gcggctcccc
2101 catcagacac tatctggtca ggtaccgagc gctctcctcc gagtggaaac cagagatcag
2161 gctcccgtct ggcagtgacc acgtcatgct gaagtccctg gactggaatg ctgagtatga
2221 ggtctacgtg gtggctgaga accagcaagg aaaatccaag gcggctcatt ttgtgttcag
2281 gacctcggcc cagcccacag ccatcccagc caacggcagc cccacctcag gcctgagcac
2341 cggggccatc gtgggcatcc tcatcgtcat cttcgtcctg ctcctggtgg ttgtggacat
2401 cacctgctac ttcctgaaca agtgtggcct gttcatgtgc attgcggtca acctgtgtgg
2461 aaaagccggg cccggggcca agggcaagga catggaggag ggcaaggccg ccttctcgaa
2521 agatgagtcc aaggagccca tcgtggaggt tcgaacggag gaggagagga ccccaaacca
2581 tgatggaggg aaacacacag agcccaacga gaccacgcca ctgacggagc ccgagaaggg
2641 ccccgtagaa gcaaagccag agtgccagga gacagaaacg aagccagcgc cagccgaagt
2701 caagacggtc cccaatgacg ccacacagac aaaggagaac gagaacaaag catgatgggt
2761 gaagagaacc gagcaaagat caaaataaaa agtgacacag cagcttcacc agagcatttc
2821 caacaccaca gacacacaca cgcacgcaca cacacaaaca cacatgcaca cacacacatc
2881 tcatttctct agtgtctttt gcctttaaaa aaaactaaac agataaaaca tgggaatctc
2941 ctttttgtag gtttatagaa agggtccctt tgttgcacac tcacttgtaa gaaaatgaga
3001 caaaaaggtt aaacccacag ccaaactagg acactccgtt ccctgaaacc gttaaaaaat
3061 caaacaaaag gaccccaaat taagaatcta ggaagctcag aaacgaaatc taggttcagg
3121 aagaccacac ttggtgttac ccgattggca cagaccagtt tcagagaaat actttcaggc
3181 actaagacta atcgaatgaa caaagtccac agtttatttt tatactttca gtcaagtttg
3241 aactctgtaa aacctcataa ataagttata atttctgttc actttgtatt tgttcagtat
3301 gcaaagtgtg tcaccctttc tagctgaatt caattcccac gtagactctt attttatagg
3361 acgaatgcca aattgcagct tctgggggta gatctcaatt tgcagtattc agacttcttt
3421 ttctttcttt tacattcttt tttctttctt tctttctgcc aactttgttt tccagtgttt
3481 acaaggtgac aaatgtttga ctttggttgt gtttaaatgt ccgtgtaaaa tagctgcctt
3541 ttatttttta aggtaacaaa taccacctag aggtaggtag gatcatccca cgcttgcttt
3601 agcacaggac aactttacaa aacatgattg tttacagctg ctcttcccct cttttctgat
3661 ctgcagtttt tgcctgggtc ccactcaggt gaaaatccat ctcattctgg aatggttttg
3721 cttttgaatt tttggttatt tttgtgtttc tttgggggtt agaccacttt ctgattagcc
3781 gccacctgcc tgcatctgtg aaaagggatc tgctcccagg cgttctcacc cttcttttga
3841 aggactcctt aggctttgtt gaatgaagca gagaagattg tatagttggg gctggtcttg
3901 gtgaacacac attattaccc cacacatccc ctttgtgtag aaagccaaat aaaatctata
3961 cataccaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
4021 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
//