LOCUS BC047083 2898 bp mRNA linear HUM 26-JUN-2007 DEFINITION Homo sapiens spastic paraplegia 20 (Troyer syndrome), mRNA (cDNA clone MGC:48338 IMAGE:5313378), complete cds. ACCESSION BC047083 VERSION BC047083.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 2898) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 2898) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (19-FEB-2003) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Miklos Palkovits, M.D., Ph.D. cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki Toshiyuki and Piero Carninci (RIKEN) cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Baylor College of Medicine Human Genome Sequencing Center Center code: BCM-HGSC Web site: http://www.hgsc.bcm.tmc.edu/cdna/ Contact: amg@bcm.tmc.edu Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H., Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati, A.N., Gibbs, R.A. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 91 Row: n Column: 6 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 40806197. FEATURES Location/Qualifiers source 1..2898 /db_xref="H-InvDB:HIT000053084" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:48338 IMAGE:5313378" /tissue_type="Brain, hypothalamus" /clone_lib="NIH_MGC_96" /lab_host="DH10B" /note="Vector: pBluescriptR" gene 1..2898 /gene="SPG20" /gene_synonym="SPARTIN" /gene_synonym="TAHCCP1" /db_xref="GeneID:23111" /db_xref="HGNC:HGNC:18514" /db_xref="MIM:607111" CDS 95..2095 /gene="SPG20" /gene_synonym="SPARTIN" /gene_synonym="TAHCCP1" /codon_start=1 /product="spastic paraplegia 20 (Troyer syndrome)" /protein_id="AAH47083.1" /db_xref="GeneID:23111" /db_xref="HGNC:HGNC:18514" /db_xref="MIM:607111" /translation="MEQEPQNGEPAEIKIIREAYKKAFLFVNKGLNTDELGQKEEAKN YYKQGIGHLLRGISISSKESEHTGTGWESARQMQQKMKETLQNVRTRLEILEKGLATS LQNDLQEVPKLYPEFPPKDMCEKLPEPQSFSSAPQHAEVNGNTSTPSAGAVAAPASLS LPSQSCPAEAPPAYTPQAAEGHYTVSYGTDSGEFSSVGEEFYRNHSQPPPLETLGLDA DELILIPNGVQIFFVNPAGEVSAPSYPGYLRIVRFLDNSLDTVLNRPPGFLQVCDWLY PLVPDRSPVLKCTAGAYMFPDTMLQAAGCFVGVVLSSELPEDDRELFEDLLRQMSDLR LQANWNRAEEENEFQIPGRTRPSSDQLKEASGTDVKQLDQGNKDVRHKGKRGKRAKDT SSEEVNLSHIVPCEPVPEEKPKELHEWSEKVAHNILSGASWVSWGLVKGAEITGKAIQ KGASKLRERIQPEEKPVEVSPAVTKGLYIAKQATGGAAKVSQFLVDGVCTVANCVGKE LAPHVKKHGSKLVPESLKKDKDGKSPLDGAMVVAASSVQGFSTVWQGLECAAKCIVNN VSAETVQTVRYKYGYNAGEATHHAVDSAVNVGVTAYNINNIGIKAMVKKTATQTGHTL LEDYQIVDNSQRENQEGAANVNVRGEKDEQTKEVKEAKKKDK" BASE COUNT 961 a 505 c 657 g 775 t ORIGIN 1 agtgtaaggg agtgggagct ggtccgtgcc gcggcggccg cgcagggagc tctcgaggca 61 acgccggggc gcccgaggtc tggaaggcgc agaaatggag caagagccac aaaatggaga 121 acctgctgaa attaagatca tcagagaagc atataagaag gcctttttat ttgttaacaa 181 aggtctgaat acagatgaat taggtcagaa ggaagaagca aagaactact ataagcaagg 241 aataggacac ctgctcagag ggatcagcat ttcatcaaaa gagtctgaac acacaggtac 301 tgggtgggaa tctgctagac agatgcaaca gaaaatgaaa gaaactctac agaatgtacg 361 caccaggctg gaaattctag agaagggtct tgccacttct ctgcagaatg atcttcagga 421 ggtgcccaag ttatatccag aatttccacc taaagacatg tgtgaaaaat taccagagcc 481 tcagtctttt agttcagctc ctcagcatgc tgaagtaaat ggaaacacct caactccaag 541 tgcaggggca gttgctgcac ctgcttctct gtctttacca tcacaaagtt gtccagcaga 601 agctcctcct gcttatactc ctcaagctgc tgaaggtcac tacactgtat cctatggaac 661 agattctggg gagttttcat cagttggaga ggagttttat aggaatcatt ctcagccacc 721 gcctcttgag accttagggc tggatgcaga tgaattgatt ttgataccaa atggagtaca 781 gatttttttt gtaaatcctg caggggaggt tagtgcacct tcgtatcctg ggtaccttcg 841 aattgtgagg tttttggata attctctcga tacggttcta aaccgtcctc ccgggtttct 901 tcaggtttgt gactggttat atcctctagt tcctgataga tctccggttc tgaaatgtac 961 tgcgggagcc tacatgtttc ctgatacaat gctacaagca gcaggatgct ttgtgggggt 1021 cgtcctgtcc tctgagttac cagaggatga tagagagctc tttgaggatc tgttaaggca 1081 aatgtctgac cttcggctcc aggccaactg gaacagagca gaagaagaaa atgaattcca 1141 aatccctgga agaactagac cctcctctga ccaactaaaa gaagcctctg gcactgatgt 1201 gaaacagttg gaccaaggca ataaggatgt acgtcataaa ggaaaacgtg gaaaaagggc 1261 taaagatact tcaagtgaag aagttaacct gagtcacatt gtaccatgtg agccagttcc 1321 agaagaaaag ccaaaagaat tacatgaatg gagtgaaaaa gtggctcaca acattttgtc 1381 aggtgcttcc tgggtgagtt ggggtttagt caaaggtgct gagattactg gtaaggcaat 1441 ccagaaaggt gcttctaaac tccgagagcg gattcaacca gaagaaaaac ccgtggaagt 1501 tagtccagct gtcaccaagg gactttatat agcgaagcaa gctacaggag gagcagcaaa 1561 agtcagtcag ttcctggttg atggagtttg cactgtagca aattgcgttg gaaaagaact 1621 agctccacat gtcaagaagc atggaagcaa acttgttcca gaatctctta aaaaagacaa 1681 agatgggaaa tctcctctgg atggtgctat ggttgtagca gcgagtagtg ttcaaggatt 1741 ttcaactgtc tggcaaggat tggaatgtgc agctaaatgc atcgttaaca atgtttcagc 1801 agaaactgta caaactgtca gatacaaata cggatataat gcaggagaag ctacccacca 1861 tgcggtggat tctgcggtca atgttggcgt aactgcctac aatattaaca acattggtat 1921 caaagcaatg gtgaagaaaa ctgcaacaca aacaggacac actctccttg aggactatca 1981 gatagttgat aattctcaga gggaaaatca agaaggagca gcaaatgtca acgtgagagg 2041 ggagaaggat gagcagacga aggaagtaaa ggaggcaaag aagaaagata aatgatgaag 2101 tgctgggaat cacttatacc aaagccttat gaaatggatg aaattttgtt aaataggcaa 2161 atgtggaatt cctcacagat taaccagtat tttttaaatg tattcattcc tacaaattaa 2221 ctttcataaa ttttatggca tgtcttctat ttaaaaggaa aagaataagt attcttgcat 2281 ctggccttag aaatgtgaag ttatattctc aagtttattt ttttccaagt gtagctaaaa 2341 tatttttgca ggtaaaataa agctgatagt acatgtgttg ttcaaacctt gttaaaccta 2401 atattgaact atttttatat ctgctgtctt tcagaaggca aataggaaac tatatatttg 2461 cttaaaaatt ggcatttagt aaccttaatt ctttttatag aaggaatgac ttaaagtatt 2521 gtcccctctt tttgcactaa ttgtggattt ttttagatgc ttctcaaaat tttcagtgtg 2581 taagctaaac aaaaactaaa actaagaatt ctcaaaaaga cttgttcaaa acagggaaag 2641 actgatgaaa agtaaaatgg actacttttg taacttacct gtttgttagg aaatggaatg 2701 gtttctttga tttaaaatga ataaaaatag attattacgt cttttgtatt gagactgtat 2761 tgttatgagc ctaggaaatt tgggaacatg attgtattgt attaaaattc gaagtgatta 2821 ttatcagctt aattggatta aaaaagtact tcaagaaatt aaaaaaaaaa aaaaaaaaaa 2881 aataaaaaaa aaaaaaaa //