LOCUS BC047064 2671 bp mRNA linear HUM 21-JUL-2005
DEFINITION Homo sapiens SRY (sex determining region Y)-box 6, mRNA (cDNA clone
MGC:48285 IMAGE:5269193), complete cds.
ACCESSION BC047064
VERSION BC047064.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2671)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2671)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (19-FEB-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 91 Row: b Column: 8
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 15277412.
FEATURES Location/Qualifiers
source 1..2671
/db_xref="H-InvDB:HIT000053079"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:48285 IMAGE:5269193"
/tissue_type="Testis"
/clone_lib="NIH_MGC_97"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..2671
/gene="SOX6"
/gene_synonym="HSSOX6"
/db_xref="GeneID:55553"
/db_xref="MIM:607257"
CDS 69..2555
/gene="SOX6"
/gene_synonym="HSSOX6"
/codon_start=1
/product="SOX6 protein"
/protein_id="AAH47064.2"
/db_xref="GeneID:55553"
/db_xref="MIM:607257"
/translation="MSSKQATSPFACAADGEDAMTQDLTSREKEEGSDQHVASHLPLH
PIMHNKPHSEELPTLVSTIQQDADWDSVLSSQQRMESENNKLCSLYSFRNTSTSPHKP
DEGSRDREIMTSVTFGTPERRKGSLADVVDTLKQKKLEEMTRTEQEDSSCMEKLLSKD
WKEKMERLNTSELLGEIKGTPESLAEKERQLSTMITQLISLREQLLAAHDEQKKLAAS
QIEKQRQQMDLARQQQEQIARQQQQLLQQQHKINLLQQQIQVQGHMPPLMIPIFPHDQ
RTLAAAAAAQQGFLFPPGITYKPGDNYPVQFIPSTMAAAAASGLSPLQLQKGHVSHPQ
INQRLKGLSDRFGRNLDTFEHGGGHSYNHKQIEQLYAAQLASMQVSPGAKMPSTPQPP
NTAGTVSPTGIKNEKRGTSPVTQVKDEAAAQPLNLSSRPKTAEPVKSPTSPTQNLFPA
SKTSPVNLPNKSSIPSPIGGSLGRGSSLDILSSLNSPALFGDQDTVMKAIQEARKMRE
QIQREQQQQQPHGVDGKLSSINNMGLNSCRNEKERTRFENLGPQLTGKSNEDGKLGPG
VIDLTRPEDAEGSKAMNGSAAKLQQYYCWPTGGATVAEARVYRDARGRASSEPHIKRP
MNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKSMSNQEKQPYYEEQARLSKIHL
EKYPNYKYKPRPKRTCIVDGKKLRIGEYKQLMRSRRQEMRQFFTVGQQPQIPITTGTG
VVYPGAITMATTTPSPQMTSDCSSTSASPEPSLPVIQSTYGMKTDGGSLAGNEMINGE
DEMEMYDDYEDDPKSDYSSENEAPEAVSAN"
BASE COUNT 841 a 676 c 634 g 520 t
ORIGIN
1 gttaggagag accattgggg ataggaaaga tgaaaggtca tggtgagctt caaggacatg
61 aaagaagaat gtcttccaag caagccacct ctccatttgc ctgtgcagct gatggagagg
121 atgcaatgac ccaggattta acctcaaggg aaaaggaaga gggcagtgat caacatgtgg
181 cctcccatct gcctctgcac cccataatgc acaacaaacc tcactctgag gagctaccaa
241 cacttgtcag taccattcaa caagatgctg actgggacag cgttctgtca tctcagcaaa
301 gaatggaatc agagaataat aagttatgtt ccctatattc cttccgaaat acctctacct
361 caccacataa gcctgacgaa gggagtcggg accgtgagat aatgaccagt gttacttttg
421 gaaccccaga gcgccgcaaa gggagtcttg ccgatgtggt ggacacactg aaacagaaga
481 agcttgagga aatgactcgg actgaacaag aggattcctc ctgcatggaa aaactacttt
541 caaaagattg gaaggaaaaa atggaaagac taaataccag tgaacttctt ggagaaatta
601 aaggtacacc tgagagcctg gcagaaaaag aacggcagct ctccaccatg attacccagc
661 tgatcagttt acgggagcag ctactggcag cgcatgatga acagaaaaaa ctggcagcgt
721 cacaaattga gaaacaacgg cagcaaatgg accttgctcg ccaacagcaa gaacagattg
781 cgagacaaca gcagcaactt ctgcaacagc agcacaaaat taatctcctg cagcaacaga
841 tccaggttca gggtcacatg cctccgctca tgatcccaat ttttccacat gaccagcgga
901 ccctggcagc agctgctgct gcccaacagg gattcctctt cccccctgga ataacataca
961 aaccaggtga taactacccc gtacagttca ttccatcaac aatggcagct gctgctgctt
1021 ctggactcag ccctttacag ctccagaagg gtcatgtctc ccacccacaa attaaccaaa
1081 ggctaaaggg cctaagtgac cgttttggca ggaatttgga cacctttgaa catggtggtg
1141 gccactctta caaccacaaa cagattgagc agctctatgc cgctcagctg gccagcatgc
1201 aggtgtcacc tggagcaaag atgccatcaa ctccacagcc accaaacaca gcagggacgg
1261 tctcacctac tgggataaaa aatgaaaaga gagggaccag ccctgtaact caagttaagg
1321 atgaagcagc agcacagcct ctgaatctct catcccgacc caagacagca gagcctgtaa
1381 agtccccaac gtctcccacc cagaacctct tcccagccag caaaaccagc cctgtcaatc
1441 tgccaaacaa aagcagcatc cctagcccca ttggaggaag cctgggaaga ggatcctctt
1501 tagatatcct atctagtctc aactcccctg ccctttttgg ggatcaggat acagtgatga
1561 aagccattca ggaggcgcgg aagatgcgag agcagatcca gcgggagcaa cagcagcaac
1621 agccacatgg tgttgacggg aaactgtcct ccataaataa tatggggctg aacagctgca
1681 ggaatgaaaa ggaaagaacg cgctttgaga atttggggcc ccagttaacg ggaaagtcaa
1741 atgaagatgg aaaactgggc ccaggtgtca tcgaccttac tcggccagaa gatgcagagg
1801 gaagtaaagc aatgaatggc tctgcagcta aactacagca gtattattgt tggccaacag
1861 gaggtgccac tgtggctgaa gcacgagtct acagggacgc ccgcggccgt gccagcagcg
1921 agccacacat taagcgacca atgaatgcat tcatggtttg ggcaaaggat gagaggagaa
1981 aaatccttca ggccttcccc gacatgcata actccaacat tagcaaaatc ttaggatctc
2041 gctggaaatc aatgtccaac caggagaagc aaccttatta tgaagagcag gcccggctaa
2101 gcaagatcca cttagagaag tacccaaact ataaatacaa accccgaccg aaacgcacct
2161 gcattgttga tggcaaaaag cttcggattg gggagtataa gcaactgatg aggtctcgga
2221 gacaggagat gaggcagttc tttactgtgg ggcaacagcc tcagattcca atcaccacag
2281 gaacaggtgt tgtgtatcct ggtgctatca ctatggcaac taccacacca tcgcctcaga
2341 tgacatctga ctgctctagc acctcggcca gcccggagcc cagcctcccg gtcatccaga
2401 gcacttatgg tatgaagaca gatggcggaa gcctagctgg aaatgaaatg atcaatggag
2461 aggatgaaat ggaaatgtat gatgactatg aagatgaccc caaatcagac tatagcagtg
2521 aaaatgaagc cccggaggct gtcagtgcca actgaggagt ttttgtttgc tgaattaaag
2581 tactctgaca tttcaccccc ctccccaaca aagagttatt aaagagcccg catgcatttg
2641 tggctccaca attacaaaaa aaaaaaaaaa a
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