LOCUS BC047023 1156 bp mRNA linear HUM 02-JUL-2005
DEFINITION Homo sapiens Rab9 effector protein with kelch motifs, mRNA (cDNA
clone MGC:54224 IMAGE:5396980), complete cds.
ACCESSION BC047023
VERSION BC047023.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1156)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1156)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (14-FEB-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 93 Row: m Column: 9
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 33695108.
FEATURES Location/Qualifiers
source 1..1156
/db_xref="H-InvDB:HIT000053068"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:54224 IMAGE:5396980"
/tissue_type="Breast, mammary adenocarcinoma."
/clone_lib="NIH_MGC_87"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1156
/gene="RABEPK"
/gene_synonym="bA65N13.1"
/gene_synonym="p40"
/gene_synonym="RAB9P40"
/db_xref="GeneID:10244"
/db_xref="MIM:605962"
CDS 150..1115
/gene="RABEPK"
/gene_synonym="bA65N13.1"
/gene_synonym="p40"
/gene_synonym="RAB9P40"
/codon_start=1
/product="RABEPK protein"
/protein_id="AAH47023.1"
/db_xref="GeneID:10244"
/db_xref="MIM:605962"
/translation="MKQLPVLEPGDKPRKATWYTLTVPGDSPCARVGHSCSYLPPVGN
AKRGKVFIVGGANPNRSFSDVHTMDLETRTWTTPEVTSPPPSPRTFHTSSAAIGNQLY
VFGGGERGAQPVQDTKLHVFDANTLTWSQPETLGNPPSPRHGHVMVAAGTKLFIHGGL
AGDRFYDDLHCIDISDMKWQKLNPTGAAPAGCAAHSAVAMGKHVYIFGGMTPAGALDT
MYQYHTEEQHWTLLKFDTLLPPGRLDHSMCIIPWPVTCASEKEDSNSLTLNHEAEKED
SADKVMSHSGDSHEESQTATLLCLVFGGMNTEGEIYDDCIVTVVD"
BASE COUNT 311 a 292 c 307 g 246 t
ORIGIN
1 gcctaagtcg ccgcagaact gccacgtggg gatgagattt gctgggctgg tagcggcggc
61 tgctgcggga ggtcccgccc acgtgaagcc agcctaactg agctctggac tttggggaca
121 gctgtcagtg gcctaggccg caggacacca tgaagcaact gccagtcttg gaacctggag
181 acaagcccag gaaagcaaca tggtacacct tgactgtccc tggagacagc ccctgtgctc
241 gagttggcca cagctgttca tatttacccc cagttggtaa tgccaagaga gggaaggtct
301 tcattgttgg gggagcaaat ccaaacagaa gcttctcaga cgtgcacacc atggatctgg
361 aaaccaggac gtggaccacg ccagaagtga ccagcccccc accatcccca agaacattcc
421 acacatcatc ggcagccatt ggaaaccagc tatatgtctt tgggggcgga gagagaggtg
481 cccagcccgt gcaggacacg aagctgcatg tgtttgacgc aaacactctg acctggtcac
541 agccagagac acttggaaat cctccatctc cccggcatgg tcatgtgatg gtggcagcag
601 ggacaaagct cttcatccac ggaggcttgg cgggggacag attctatgat gacctccact
661 gcattgatat aagtgacatg aaatggcaga agctaaatcc cactggggct gctccagcag
721 gctgtgctgc ccactcagct gtggccatgg gaaaacatgt gtacatcttt ggtggaatga
781 ctcctgcagg agcactggac acaatgtacc agtatcacac agaagagcag cattggacct
841 tgcttaaatt tgatactctt ctaccccctg gacgattgga ccattccatg tgtatcattc
901 catggccagt gacgtgtgct tctgagaaag aagattccaa ctctctcact ctgaaccatg
961 aagctgagaa agaggattca gctgacaaag taatgagcca cagtggtgac tcacatgagg
1021 aaagccagac tgctacactg ctctgtttgg tgtttggtgg gatgaataca gaaggggaaa
1081 tctatgacga ttgtattgtg actgtagtgg actaataaaa cccacatttt tattacctgt
1141 caaaaaaaaa aaaaaa
//