LOCUS BC046169 1585 bp mRNA linear HUM 05-NOV-2003
DEFINITION Homo sapiens SET binding factor 1, mRNA (cDNA clone IMAGE:6192910),
partial cds.
ACCESSION BC046169
VERSION BC046169.2
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1585)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1585)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (31-JAN-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Sep 16, 2003 this sequence version replaced BC046169.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Dr. James R. Lupski
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 107 Row: n Column: 3
This clone was selected for full length sequencing because it
passed the following selection criteria: Similarity but not
identity to protein.
FEATURES Location/Qualifiers
source 1..1585
/db_xref="H-InvDB:HIT000098297"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:6192910"
/tissue_type="Peripheral Nervous System, sympathetic
trunk"
/clone_lib="Lupski_sympathetic_trunk"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene <1..1585
/gene="SBF1"
/gene_synonym="MTMR5"
/db_xref="GeneID:6305"
/db_xref="MIM:603560"
CDS <1..1205
/gene="SBF1"
/gene_synonym="MTMR5"
/codon_start=3
/product="SBF1 protein"
/protein_id="AAH46169.2"
/db_xref="GeneID:6305"
/db_xref="MIM:603560"
/translation="GAHTLAGQSSGFTPVFLQFLDCVHQVHLQFPMEFEFSQFYLKFL
GYHHVSRRFRTFLLDSDYERIELGLLYEEKGERRGQVPCRSVWEYVDRLSKRTPVFHN
YMYAPEDAEVLRPYSNVSNLKVWDFYTEETLAEGPPYDWELAQGPPEPPEEERSDGGA
PQSRRRVVWPCYDSCPRAQPDAISRLLEELQRLETELGQPAERWKDTWDRVKAAQRLE
GRPDGRGTPSSLLVSTAPHHRRSLGVYLQEGPVGSTLSLSLDSDQSSGSTTSGSRQAA
RRSTSTLYSQFQTAESENRSYEGTLYKKGAFMKPWKARWFVLDKTKHQLRYYDHRVDT
ECKGVIDLAEVEAVAPGTPTMGAPKTVDEKAFFDVKTTRRVYNFCAQDVPSAQQWVDR
IQSCLSDA"
misc_feature 891..1202
/gene="SBF1"
/gene_synonym="MTMR5"
/note="PH; Region: Pleckstrin homology domain"
/db_xref="CDD:smart00233"
BASE COUNT 331 a 506 c 483 g 265 t
ORIGIN
1 gtggagctca caccctggcc gggcagagca gcggcttcac acccgtcttc ctgcagttcc
61 tggactgcgt acaccaggtc cacctgcagt tccccatgga gtttgagttc agccagttct
121 acctcaagtt cctcggctac caccatgtgt cccgccgttt ccggaccttc ctgctcgact
181 ctgactatga gcgcattgag ctggggctgc tgtatgagga gaagggggaa cgcaggggcc
241 aggtgccgtg caggtctgtg tgggagtatg tggaccggct gagcaagagg acgcctgtgt
301 tccacaatta catgtatgcg cccgaggacg cagaggtcct gcggccctac agcaacgtgt
361 ccaacctgaa ggtgtgggac ttctacactg aggagacgct ggccgagggc cctccctatg
421 actgggaact ggcccagggg ccccctgaac ccccagagga agaacggtct gatggaggcg
481 ctccccagag caggcgccgc gtggtgtggc cctgttacga cagctgcccg cgggcccagc
541 ctgacgccat ctcacgcctg ctggaggagc tgcagaggct ggagacagag ttgggccaac
601 ccgctgagcg ctggaaggac acctgggacc gggtgaaggc tgcacagcgc ctcgagggcc
661 ggccagacgg ccgtggcacc cctagctccc tccttgtgtc caccgcaccc caccaccgtc
721 gctcgctggg tgtgtacctg caggaggggc ccgtgggctc caccctgagc ctcagcctgg
781 acagcgacca gagtagtggc tcaaccacat ccggctcccg tcaggctgcc cgccgcagca
841 ccagcaccct gtacagccag ttccagacag cagagagtga gaacaggtcc tacgagggca
901 ctctgtacaa gaagggggcc ttcatgaagc cttggaaggc ccgctggttc gtgctggaca
961 agaccaagca ccagctgcgc tactacgacc accgtgtgga cacagagtgc aagggtgtca
1021 tcgacttggc ggaggtggag gctgtggcac ctggcacgcc cactatgggt gcccctaaga
1081 ccgtggacga gaaggccttc tttgacgtga agacaacgcg tcgcgtttac aacttctgtg
1141 cccaggacgt gccctcggcc cagcagtggg tggaccggat ccagagctgc ctgtcggacg
1201 cctgagcctc ccagccctgc ccggctgctc tgcttccggt cgttaccgac cactaggggt
1261 gggcagggcc gccccggcca tgtttacagc cccggccctc gacagtattg aggccccgag
1321 cccccagcac ttgtgtgtac agcccccgtc cccgccccgc cccgcccggc cggccctaac
1381 ttattttggc gtcacagctg agcaccgtgc cgggaggtgg ccaaggtaca gcccgcaatg
1441 ggcctgtaaa tagtccggcc ccgtcagcgt gtgctggtcc agccagcggc tgcaggcgag
1501 tttctagaac cagagtctat ataaagagag aactaacgcc aaaaaaaaaa aaaaaaaaaa
1561 aaaaaaaaaa aaaaaaaaaa aaaaa
//