LOCUS BC045667 4129 bp mRNA linear HUM 24-JUL-2006 DEFINITION Homo sapiens sorting nexin 13, mRNA (cDNA clone MGC:44494 IMAGE:5298570), complete cds. ACCESSION BC045667 VERSION BC045667.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 4129) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 4129) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (31-JAN-2003) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Miklos Palkovits, M.D., Ph.D. cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki Toshiyuki and Piero Carninci (RIKEN) cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Sequencing Group at the Stanford Human Genome Center, Stanford University School of Medicine, Stanford, CA 94305 Web site: http://www-shgc.stanford.edu Contact: (Dickson, Mark) mcd@paxil.stanford.edu Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, R. M. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 77 Row: a Column: 18 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 23238242. FEATURES Location/Qualifiers source 1..4129 /db_xref="H-InvDB:HIT000052961" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:44494 IMAGE:5298570" /tissue_type="Testis" /clone_lib="NIH_MGC_97" /lab_host="DH10B" /note="Vector: pBluescriptR" gene 1..4129 /gene="SNX13" /gene_synonym="KIAA0713" /gene_synonym="RGS-PX1" /db_xref="GeneID:23161" /db_xref="HGNC:HGNC:21335" /db_xref="MIM:606589" CDS 184..3057 /gene="SNX13" /gene_synonym="KIAA0713" /gene_synonym="RGS-PX1" /codon_start=1 /product="sorting nexin 13" /protein_id="AAH45667.1" /db_xref="GeneID:23161" /db_xref="HGNC:HGNC:21335" /db_xref="MIM:606589" /translation="MLTEASLSIWGWGSLGIVLFLITFGPFVIFYLTFYILCFVGGGL VVTLLFGKTNSEKYLEQCEHSFLPPTSPGVPKCLEEMKREARTIKIDRRLTGANIIDE PLQQVIQFSLRDYVQYWYYTLSDDESFLLEIRQTLQNALIQFATRSKEIDWQPYFTTR IVDDFGTHLRVFRKAQQKITEKDDQVKGTAEDLVDTFFEVEVEMEKEVCRDLVCTSPK DEEGFLRDLCEVLLYLLLPPGDFQNKIMRYFVREILARGILLPLINQLSDPDYINQYV IWMIRDSNCNYEAFMNIIKLSDNIGELEAVRDKAAEELQYLRSLDTAGDDINTIKNQI NSLLFVKKVCDSRIQRLQSGKEINTVKLAANFGKLCTVPLDSILVDNVALQFFMDYMQ QTGGQAHLFFWMTVEGYRVTAQQQLEVLLSRQRDGKHQTNQTKGLLRAAAVGIYEQYL SEKASPRVTVDDYLVAKLADTLNHEDPTPEIFDDIQRKVYELMLRDERFYPSFRQNAL YVRMLAELDMLKDPSFRGSDDGDGESFNGSPTGSINLSLDDLSNVSSDDSVQLHAYIS DTGVCNDHGKTYALYAITVHRRNLNSEEMWKTYRRYSDFHDFHMRITEQFESLSSILK LPGKKTFNNMDRDFLEKRKKDLNAYLQLLLAPEMMKASPALAHYVYDFLENKAYSKGK GDFARKMDTFVNPLRNSMRNVSNAVKSLPDNLAEGMTKMSDNMGKMSERLGQDIKQSF FKVPPLIPKTDSDPEHRRVSAQLDDNVDDNIPLRVMLLLMDEVFDLKERNQWLRRNIK NLLQQLIRATYGDTINRKIVDHVDWMTSPEQVADSVKRFRDAFWPNGILAEAVPCRDK SIRMRTRVAGKTKLLAIMPDELKHIIGAETTRKGILRVFEMFQHNQLNRRMVYVFLEG FLETLFPQYKFRELFNKLHSRSKQMQKYKQKLQTTQAPSLQKR" BASE COUNT 1333 a 729 c 856 g 1211 t ORIGIN 1 ggctcgtccg tcgcgagcga ccgggccgag gggaggccag cgaagccgag taaaaccgcc 61 gcccgggaga agactgaagg agcagttgcc gccgttggcg gcggcccgag cagttttcgc 121 tgctgctacg gctgttgcca tgaggcgagg ctagggagga cctcacttcc ccggggtgta 181 ataatgttaa ctgaggccag tctatccata tggggatggg gaagccttgg cattgtcctt 241 tttctgataa cctttggacc ctttgtaata ttttatttga cattttatat cctctgcttt 301 gtgggtgggg gtttagtggt tactctcctg tttggaaaaa caaactcaga gaagtaccta 361 gaacagtgtg aacactcatt tcttcctcca acatcacctg gggttcctaa gtgcttagaa 421 gaaatgaaac gggaagccag gactattaag attgatagaa gattgacggg tgccaatata 481 attgatgaac ctctccagca agttatccag ttttccttga gggattatgt ccagtattgg 541 tattatacac taagcgatga tgaatctttt cttcttgaaa ttaggcagac tcttcaaaac 601 gcactcattc agtttgctac taggtcaaaa gaaatagact ggcaacctta ttttactaca 661 cgcattgtag atgactttgg cacacactta cgagtattca gaaaggctca acagaaaata 721 acagagaaag atgatcaagt gaaaggtaca gcagaagatc ttgtagatac cttctttgaa 781 gttgaagttg aaatggagaa ggaggtttgc cgtgatctag tgtgcacttc ccccaaagat 841 gaagaaggat tcctaaggga tttgtgtgag gtcttactat atttattgct acctcctgga 901 gatttccaga acaagatcat gcgatacttt gtcagggaaa tccttgcacg aggaattctt 961 cttccattaa taaatcaact cagtgatcct gattatatta atcagtatgt catatggatg 1021 atccgtgatt ctaactgcaa ctatgaggcc tttatgaaca ttattaaatt gagtgacaat 1081 attggagagc tagaagcagt cagagataag gcagcagaag aattacagta tcttagatct 1141 ctagatacag ctggtgatga tatcaacact atcaaaaatc aaataaatag cttactattc 1201 gtaaagaagg tatgtgactc aagaatacag cgattgcagt caggcaaaga aataaatact 1261 gtgaaacttg cagcaaactt tgggaaactt tgcacagtcc ccctggacag cattcttgta 1321 gacaatgttg cactacaatt ttttatggat tacatgcagc aaactggagg tcaagcacat 1381 ctattctttt ggatgacagt ggaaggatac cgggttaccg cccaacagca gctagaagtt 1441 ttattaagtc gtcagagaga tggaaaacat caaaccaacc aaaccaaagg tcttttaaga 1501 gcagctgctg ttggaattta tgaacagtat ttatcagaaa aggcatctcc aagagttact 1561 gttgatgact atttagtagc aaaattagca gatactttga atcatgaaga tccaacccct 1621 gaaatctttg atgacattca aagaaaggta tatgaattga tgctacgaga tgaaagattt 1681 tatccttcct tcagacagaa tgcactttat gtgcgcatgt tagctgagct tgacatgtta 1741 aaagatccta gtttcagagg atccgatgat ggggatggag aatcttttaa tgggtctcct 1801 acaggaagca taaatttgtc tttagatgac ctttcaaatg tttcttctga tgactcagta 1861 caacttcatg cctacatttc agacacaggc gtttgtaatg atcatggcaa gacatatgca 1921 ttatatgcca tcactgtaca ccggcgcaac ctaaacagtg aggagatgtg gaaaacctat 1981 cgtcgttata gtgacttcca tgacttccac atgagaatca ctgaacagtt tgaaagtctc 2041 tcaagcatat tgaaacttcc tggaaaaaag acttttaata atatggatag agatttttta 2101 gaaaagagaa aaaaggatct aaatgcatat ttgcagttac tgttagctcc tgaaatgatg 2161 aaggcatccc ccgctttagc tcactatgtg tatgatttcc ttgagaacaa agcctacagt 2221 aaaggaaaag gggattttgc tcgcaagatg gacacttttg taaatccact tcgcaattca 2281 atgaggaatg tttcaaatgc agttaaatcc cttcctgata acttggcaga gggaatgact 2341 aaaatgtcag acaacatggg caaaatgtca gaaagattag gtcaagacat aaagcaatca 2401 ttttttaagg tgcctccttt aattcctaag actgattcag accctgaaca tcgccgagtt 2461 tcggctcaac ttgacgataa tgtggatgac aatattccac ttagggtaat gctgcttctc 2521 atggatgaag tattcgactt aaaagaaaga aatcagtggt tgcgaaggaa tatcaaaaac 2581 ctacttcaac agcttattag agctacatat ggcgatacta ttaatagaaa aatagttgac 2641 catgttgact ggatgacttc acctgaacaa gtagccgact cagtgaaacg tttcagagat 2701 gcattttggc caaatggcat tttagcagag gctgttccat gcagagataa aagtattcga 2761 atgagaacaa gagtagcagg aaaaacgaaa ttacttgcaa ttatgccaga tgagctgaag 2821 cacattattg gggctgagac aacacggaaa ggtattcttc gtgtttttga aatgtttcag 2881 cacaaccaat taaataggag aatggtttat gtcttcttgg aaggcttttt agaaacctta 2941 tttccacagt ataaattccg tgaacttttc aacaaactgc attcacggtc aaagcagatg 3001 cagaaatata aacagaaact tcaaactact caagcgcctt ctttgcagaa aaggtgacac 3061 tccactctat gaagctggtg ttcattttgt ccaggactaa tggtatggac agatcttctg 3121 gggcttaact caaatactgt tgtgtctgca ccagtctttt agtgtctcaa aatagattat 3181 taatacatcc ataagtctgt ggttcttctc attctcatct ataatccacc actaccaaga 3241 gagatttctg tgtcttaaat gatttggtgc atattttgca acattgagag aaaactgccc 3301 ccatctcaag caagaatggc gttggtttct tccatttcaa actaatcagc attctccagc 3361 aatgacaaag tgccagagtg tatatatgaa agctaaggaa agcacaaaac aatggttcag 3421 agataaattg gctaatttgt ttaacagttg gagactgtgc aatgtacgac ttggaggagt 3481 ttgtttggca taatgatttt gtaggtctgt cagcattttg atatattgtg gattagccag 3541 gtgaatgatc cttgaaacat ctctttcagg tctggagaaa gagacagaat gcccttaaag 3601 tgtgaaataa ccttatacct gaattacagt tttgtgatat aaaataaagc tgagtataaa 3661 ataaaaccaa tcaaacacag aatttgattg gatttgttat tcattggtat acaacaattt 3721 ttattcttat gtgtgcttta agggctgtgt tttgctctta gggtactcaa ttttatgttt 3781 ccttttggca ttctttgtgc aaaaagaagc atgtggtggc tctcatttaa atttcaaaat 3841 tattagtttt atctttaaca gattactgat tatacagaag atataattta ttggaagaac 3901 tgccaaatac attttgtcct tctaaaaata tggaaattta aatagtagtc tggaaagtta 3961 ccatatgata atttttaatt gtgtgatcta gacatgcctt aggtaactgc agaaatagca 4021 aattaaatga ttaatgagct tattagtcat agtaaacata cagattccta attctatgac 4081 agtgtacata tatgaaaata aatgatgaaa aaagaaaaaa aaaaaaaaa //