LOCUS BC045637 3423 bp mRNA linear HUM 17-JUL-2006 DEFINITION Homo sapiens protocadherin beta 12, mRNA (cDNA clone MGC:41768 IMAGE:5302381), complete cds. ACCESSION BC045637 VERSION BC045637.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 3423) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 3423) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (31-JAN-2003) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Miklos Palkovits, M.D., Ph.D. cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki Toshiyuki and Piero Carninci (RIKEN) cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Sequencing Group at the Stanford Human Genome Center, Stanford University School of Medicine, Stanford, CA 94305 Web site: http://www-shgc.stanford.edu Contact: (Dickson, Mark) mcd@paxil.stanford.edu Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, R. M. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 77 Row: i Column: 12 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 52486159. FEATURES Location/Qualifiers source 1..3423 /db_xref="H-InvDB:HIT000052952" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:41768 IMAGE:5302381" /tissue_type="Brain, hypothalamus" /clone_lib="NIH_MGC_96" /lab_host="DH10B" /note="Vector: pBluescriptR" gene 1..3423 /gene="PCDHB12" /gene_synonym="PCDH-BETA12" /db_xref="GeneID:56124" /db_xref="HGNC:HGNC:8683" /db_xref="MIM:606338" CDS 190..2577 /gene="PCDHB12" /gene_synonym="PCDH-BETA12" /codon_start=1 /product="protocadherin beta 12" /protein_id="AAH45637.1" /db_xref="GeneID:56124" /db_xref="HGNC:HGNC:8683" /db_xref="MIM:606338" /translation="MENGGAGTLQIRQVLLFFVLLGMSQAGSETGNFLVMEELQSGSF VGNLAKTLGLEVSELSSRGARVVSNDNKECLQLDTNTGDLLLREMLDREELCGSNEPC VLYFQVLMKNPTQFLQIELQVRDINDHSPVFLEKEMLLEIPENSPVGAVFLLESAKDL DVGINAVKSYTINPNSHFHVKIRVNPDNRKYPELVLDKALDYEERPELSFILTALDGG SPPRSGTALVRVVVVDINDNSPEFEQAFYEVKILENSILGSLVVTVSAWDLDSGTNSE LSYTFSHASEDIRKTFEINQKSGDITLTAPLDFEAIESYSIIIQATDGGGLFGKSTVR IQVMDVNDNAPEITVSSITSPIPENTPETVVMVFRIRDRDSGDNGKMVCSIPEDIPFV LKSSVNNYYTLETERPLDRESRAEYNITITVTDLGTPRLKTEHNITVLVSDVNDNAPA FTQTSYALFVRENNSPALHIGSISATDRDSGTNAQVNYSLLPSQDPHLPLASLVSINA DNGHLFALRSLDYEALQGFQFRVGATDHGSPALSSEALVRVLVLDANDNSPFVLYPLQ NGSAPCTELVPWAAEPGYLVTKVVAVDGDSGQNAWLSYQLLKATEPGLFGVWAHNGEV RTARLLSERDAAKHRLVVLVKDNGEPPRSATATLHVLLVDGFSQPYLPLPEAAPAQAQ ADSLTVYLVVALASVSSLFLFSVLLFVAVRLCRRSRAAPVGRCSVPEGPFPGHLVDVS GTGTLSQSYHYEVCVTGGSRSNKFKFLKPIIPNFLPQSTGSEVEENPPFQNNLGF" BASE COUNT 908 a 813 c 832 g 870 t ORIGIN 1 agtacacgcg gagaactggg aagacagaaa gaacaatcct ttaagggaga acctagaagc 61 cattcaacaa ggttaaaatc ttcaggcttc cgaggatttg gtagacagat cagaggcacg 121 tttcccacaa ctgcgaagag gcgctgaggc aattctgcaa gaagattttg gggttttgga 181 aaagaagcta tggaaaacgg aggggcaggc actctgcaga taaggcaagt cctgcttttc 241 tttgttttgc tgggaatgtc tcaggcgggc tctgaaactg ggaacttttt ggtgatggag 301 gaattgcaga gcgggagctt tgtaggaaat ttggcaaaga ccctgggact cgaggtgagt 361 gagctgtctt cgcggggggc tcgggtggtt tctaatgata acaaagagtg tttgcagctg 421 gacacaaaca ctggggattt gctcctgaga gaaatgctag acagggagga gctctgtggc 481 tccaatgagc cttgtgtgct gtatttccaa gtgttaatga aaaaccccac gcagttttta 541 caaattgagc tccaggtcag ggatataaat gatcactctc ccgtcttctt ggaaaaagaa 601 atgctcttag aaatcccaga gaacagtcct gttggtgctg tgttcttgct tgaaagtgca 661 aaggatttag atgtaggaat caatgctgta aaaagctaca caataaatcc gaactctcat 721 ttccacgtta aaataagagt caatccagac aataggaaat accctgagtt agttctggac 781 aaggcgctgg attatgaaga gcgcccggag ctcagtttca tcctcactgc tctggatggc 841 gggtcccctc ccaggtctgg aactgccttg gtcagggtgg tggttgtaga tattaatgac 901 aactcccctg agtttgagca ggctttttat gaggtgaaga ttctggagaa tagcatcctt 961 ggctccctgg ttgtgaccgt ctcagcctgg gatttagact ctggaacaaa cagtgaacta 1021 tcctatacct tttcccatgc ctcagaagat attcgcaaga catttgaaat taatcaaaag 1081 tctggtgaca ttactttaac agcacctttg gattttgaag caattgagtc atactcaata 1141 atcattcaag ccacagatgg gggaggactt tttggaaaat ctacagtcag aattcaggtg 1201 atggatgtaa acgacaacgc tcctgaaatc actgtgtcat caattaccag tccaatccca 1261 gaaaacactc cagagactgt ggttatggtt ttcaggatac gagacagaga ctctggggac 1321 aacggaaaga tggtttgttc tatcccggag gacatcccat tcgtgctaaa atcttcggta 1381 aataattact acactttgga aacagagaga ccgctggaca gagagagcag agccgagtac 1441 aacatcacca tcaccgtcac cgacttgggg acccccaggc taaaaaccga gcacaacata 1501 accgtgctgg tctccgacgt caatgacaac gcccccgcct tcacccaaac ttcctacgcc 1561 ctgttcgtcc gcgagaacaa cagccccgcc ctgcacatcg gcagcatcag cgccacagac 1621 agagactcgg gcaccaacgc ccaggtcaac tactcgctgc tgccgtccca ggacccgcac 1681 ctgcccctcg cctccctggt ctccatcaac gcggacaacg gccacctgtt tgccctcagg 1741 tcgctggact acgaggccct gcaggggttc cagttccgcg tgggcgccac agaccacggc 1801 tccccggctt tgagcagcga ggcgctggtg cgcgtgctgg tgctggacgc caacgacaac 1861 tcgcccttcg tgctgtaccc gctgcagaac ggctccgcgc cctgcaccga gctggtgccc 1921 tgggcggccg agccgggcta cctggtgacc aaggtggtgg cggtggacgg tgactcgggc 1981 cagaacgcct ggctgtcgta ccagctgctc aaggccacgg agcccgggct attcggcgtg 2041 tgggcgcaca atggcgaggt gcgcaccgcc aggctgctga gcgagcgcga cgcggccaag 2101 cacaggctgg tggtgctggt caaggacaat ggcgagcctc cgcgctcggc caccgccacg 2161 ctgcacgtgc tcctggtgga cggcttctcc cagccctacc tgcctctccc ggaggcggcc 2221 ccggcccagg cccaggccga ctcgctcact gtctacctgg tagtggcgtt ggcctcagtg 2281 tcgtcgctct tcctcttctc ggtgctcctg ttcgtggcgg tgcggctgtg caggaggagc 2341 agggcggccc cggtcggtcg ctgctcggtg cctgagggcc cctttccagg acatctggtg 2401 gacgtgagtg gcaccgggac cctgtcccag agctaccact atgaggtgtg tgtgactgga 2461 ggctccaggt caaataagtt caaatttctg aaaccaatta tccccaactt cctaccccag 2521 agcacaggta gtgaagtcga agaaaatccc ccatttcaga ataatttggg tttctgataa 2581 agaatgaaaa ataaaacctg tgtttatgaa tacatttata attaggaact tatcgtgagg 2641 tgcctgtaaa gtagtatttt tgatcacttc aaatacatac tcttcaagtc aagaaataaa 2701 tttctttaca tagaaaagga tacagattta gtaccaagaa cacttcacaa agcaggaaat 2761 gtgcatgtgt aatggtttat gtcaaacaat tatgcttaat ataaagtcta ttaagtggta 2821 agtcttgttt gagatatttt aaattgcttt ccattgtttt caatatttac tgtgactttt 2881 gttttctgag ttgattagaa tgctgttcga gtatacctac cctagtttca gaagcataga 2941 ttgtagtgta cctttttaaa ctttattttt ttaaaaaaaa gttgttttat gaatcataca 3001 ctattttcac acttttaatc tcagaagaaa catatgtgac atggtatttt agtaatgacc 3061 aaatagacgg tcttagagat tcagtaagtt cactaaggtc cactaactaa taagtgacaa 3121 aactgagcat ccatcctaga tctgcctgac tctaagtcag tgactttgct cccattccat 3181 actgtttttg tcattggata tcacctggca agtttctgcc taactaaaga gaagaaaagt 3241 ttttatcgta ttcatactac tgttcaatct ttatttagaa ataaacttta tctatgattt 3301 cattttctta taaaccagta atcttgcttt tctgggtaaa ttttcagcta ttattactaa 3361 tgctctgatc tgcccaaatc ttaagtaaaa aacaaaattg aaagagcaaa aaaaaaaaaa 3421 aaa //