LOCUS       BC045637                3423 bp    mRNA    linear   HUM 17-JUL-2006
DEFINITION  Homo sapiens protocadherin beta 12, mRNA (cDNA clone MGC:41768
            IMAGE:5302381), complete cds.
ACCESSION   BC045637
VERSION     BC045637.1
KEYWORDS    MGC.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 3423)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
   PUBMED   12477932
REFERENCE   2  (bases 1 to 3423)
  CONSRTM   NIH MGC Project
  TITLE     Direct Submission
  JOURNAL   Submitted (31-JAN-2003) National Institutes of Health, Mammalian
            Gene Collection (MGC), Bethesda, MD 20892-2590, USA
  REMARK    NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT     Contact: MGC help desk
            Email: cgapbs-r@mail.nih.gov
            Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
            cDNA Library Preparation: Michael J. Brownstein (NHGRI) &  Shiraki
            Toshiyuki and Piero Carninci (RIKEN)
            cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
            DNA Sequencing by: Sequencing Group at the Stanford Human Genome
            Center, Stanford University School of Medicine, Stanford, CA  94305
            Web site:       http://www-shgc.stanford.edu
            Contact:  (Dickson, Mark) mcd@paxil.stanford.edu
            Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
            R. M.
            
            Clone distribution: MGC clone distribution information can be found
            through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
            Series: IRAK Plate: 77 Row: i Column: 12
            This clone was selected for full length sequencing because it
            passed the following selection criteria: matched mRNA gi: 52486159.
FEATURES             Location/Qualifiers
     source          1..3423
                     /db_xref="H-InvDB:HIT000052952"
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /clone="MGC:41768 IMAGE:5302381"
                     /tissue_type="Brain, hypothalamus"
                     /clone_lib="NIH_MGC_96"
                     /lab_host="DH10B"
                     /note="Vector: pBluescriptR"
     gene            1..3423
                     /gene="PCDHB12"
                     /gene_synonym="PCDH-BETA12"
                     /db_xref="GeneID:56124"
                     /db_xref="HGNC:HGNC:8683"
                     /db_xref="MIM:606338"
     CDS             190..2577
                     /gene="PCDHB12"
                     /gene_synonym="PCDH-BETA12"
                     /codon_start=1
                     /product="protocadherin beta 12"
                     /protein_id="AAH45637.1"
                     /db_xref="GeneID:56124"
                     /db_xref="HGNC:HGNC:8683"
                     /db_xref="MIM:606338"
                     /translation="MENGGAGTLQIRQVLLFFVLLGMSQAGSETGNFLVMEELQSGSF
                     VGNLAKTLGLEVSELSSRGARVVSNDNKECLQLDTNTGDLLLREMLDREELCGSNEPC
                     VLYFQVLMKNPTQFLQIELQVRDINDHSPVFLEKEMLLEIPENSPVGAVFLLESAKDL
                     DVGINAVKSYTINPNSHFHVKIRVNPDNRKYPELVLDKALDYEERPELSFILTALDGG
                     SPPRSGTALVRVVVVDINDNSPEFEQAFYEVKILENSILGSLVVTVSAWDLDSGTNSE
                     LSYTFSHASEDIRKTFEINQKSGDITLTAPLDFEAIESYSIIIQATDGGGLFGKSTVR
                     IQVMDVNDNAPEITVSSITSPIPENTPETVVMVFRIRDRDSGDNGKMVCSIPEDIPFV
                     LKSSVNNYYTLETERPLDRESRAEYNITITVTDLGTPRLKTEHNITVLVSDVNDNAPA
                     FTQTSYALFVRENNSPALHIGSISATDRDSGTNAQVNYSLLPSQDPHLPLASLVSINA
                     DNGHLFALRSLDYEALQGFQFRVGATDHGSPALSSEALVRVLVLDANDNSPFVLYPLQ
                     NGSAPCTELVPWAAEPGYLVTKVVAVDGDSGQNAWLSYQLLKATEPGLFGVWAHNGEV
                     RTARLLSERDAAKHRLVVLVKDNGEPPRSATATLHVLLVDGFSQPYLPLPEAAPAQAQ
                     ADSLTVYLVVALASVSSLFLFSVLLFVAVRLCRRSRAAPVGRCSVPEGPFPGHLVDVS
                     GTGTLSQSYHYEVCVTGGSRSNKFKFLKPIIPNFLPQSTGSEVEENPPFQNNLGF"
BASE COUNT          908 a          813 c          832 g          870 t
ORIGIN      
        1 agtacacgcg gagaactggg aagacagaaa gaacaatcct ttaagggaga acctagaagc
       61 cattcaacaa ggttaaaatc ttcaggcttc cgaggatttg gtagacagat cagaggcacg
      121 tttcccacaa ctgcgaagag gcgctgaggc aattctgcaa gaagattttg gggttttgga
      181 aaagaagcta tggaaaacgg aggggcaggc actctgcaga taaggcaagt cctgcttttc
      241 tttgttttgc tgggaatgtc tcaggcgggc tctgaaactg ggaacttttt ggtgatggag
      301 gaattgcaga gcgggagctt tgtaggaaat ttggcaaaga ccctgggact cgaggtgagt
      361 gagctgtctt cgcggggggc tcgggtggtt tctaatgata acaaagagtg tttgcagctg
      421 gacacaaaca ctggggattt gctcctgaga gaaatgctag acagggagga gctctgtggc
      481 tccaatgagc cttgtgtgct gtatttccaa gtgttaatga aaaaccccac gcagttttta
      541 caaattgagc tccaggtcag ggatataaat gatcactctc ccgtcttctt ggaaaaagaa
      601 atgctcttag aaatcccaga gaacagtcct gttggtgctg tgttcttgct tgaaagtgca
      661 aaggatttag atgtaggaat caatgctgta aaaagctaca caataaatcc gaactctcat
      721 ttccacgtta aaataagagt caatccagac aataggaaat accctgagtt agttctggac
      781 aaggcgctgg attatgaaga gcgcccggag ctcagtttca tcctcactgc tctggatggc
      841 gggtcccctc ccaggtctgg aactgccttg gtcagggtgg tggttgtaga tattaatgac
      901 aactcccctg agtttgagca ggctttttat gaggtgaaga ttctggagaa tagcatcctt
      961 ggctccctgg ttgtgaccgt ctcagcctgg gatttagact ctggaacaaa cagtgaacta
     1021 tcctatacct tttcccatgc ctcagaagat attcgcaaga catttgaaat taatcaaaag
     1081 tctggtgaca ttactttaac agcacctttg gattttgaag caattgagtc atactcaata
     1141 atcattcaag ccacagatgg gggaggactt tttggaaaat ctacagtcag aattcaggtg
     1201 atggatgtaa acgacaacgc tcctgaaatc actgtgtcat caattaccag tccaatccca
     1261 gaaaacactc cagagactgt ggttatggtt ttcaggatac gagacagaga ctctggggac
     1321 aacggaaaga tggtttgttc tatcccggag gacatcccat tcgtgctaaa atcttcggta
     1381 aataattact acactttgga aacagagaga ccgctggaca gagagagcag agccgagtac
     1441 aacatcacca tcaccgtcac cgacttgggg acccccaggc taaaaaccga gcacaacata
     1501 accgtgctgg tctccgacgt caatgacaac gcccccgcct tcacccaaac ttcctacgcc
     1561 ctgttcgtcc gcgagaacaa cagccccgcc ctgcacatcg gcagcatcag cgccacagac
     1621 agagactcgg gcaccaacgc ccaggtcaac tactcgctgc tgccgtccca ggacccgcac
     1681 ctgcccctcg cctccctggt ctccatcaac gcggacaacg gccacctgtt tgccctcagg
     1741 tcgctggact acgaggccct gcaggggttc cagttccgcg tgggcgccac agaccacggc
     1801 tccccggctt tgagcagcga ggcgctggtg cgcgtgctgg tgctggacgc caacgacaac
     1861 tcgcccttcg tgctgtaccc gctgcagaac ggctccgcgc cctgcaccga gctggtgccc
     1921 tgggcggccg agccgggcta cctggtgacc aaggtggtgg cggtggacgg tgactcgggc
     1981 cagaacgcct ggctgtcgta ccagctgctc aaggccacgg agcccgggct attcggcgtg
     2041 tgggcgcaca atggcgaggt gcgcaccgcc aggctgctga gcgagcgcga cgcggccaag
     2101 cacaggctgg tggtgctggt caaggacaat ggcgagcctc cgcgctcggc caccgccacg
     2161 ctgcacgtgc tcctggtgga cggcttctcc cagccctacc tgcctctccc ggaggcggcc
     2221 ccggcccagg cccaggccga ctcgctcact gtctacctgg tagtggcgtt ggcctcagtg
     2281 tcgtcgctct tcctcttctc ggtgctcctg ttcgtggcgg tgcggctgtg caggaggagc
     2341 agggcggccc cggtcggtcg ctgctcggtg cctgagggcc cctttccagg acatctggtg
     2401 gacgtgagtg gcaccgggac cctgtcccag agctaccact atgaggtgtg tgtgactgga
     2461 ggctccaggt caaataagtt caaatttctg aaaccaatta tccccaactt cctaccccag
     2521 agcacaggta gtgaagtcga agaaaatccc ccatttcaga ataatttggg tttctgataa
     2581 agaatgaaaa ataaaacctg tgtttatgaa tacatttata attaggaact tatcgtgagg
     2641 tgcctgtaaa gtagtatttt tgatcacttc aaatacatac tcttcaagtc aagaaataaa
     2701 tttctttaca tagaaaagga tacagattta gtaccaagaa cacttcacaa agcaggaaat
     2761 gtgcatgtgt aatggtttat gtcaaacaat tatgcttaat ataaagtcta ttaagtggta
     2821 agtcttgttt gagatatttt aaattgcttt ccattgtttt caatatttac tgtgactttt
     2881 gttttctgag ttgattagaa tgctgttcga gtatacctac cctagtttca gaagcataga
     2941 ttgtagtgta cctttttaaa ctttattttt ttaaaaaaaa gttgttttat gaatcataca
     3001 ctattttcac acttttaatc tcagaagaaa catatgtgac atggtatttt agtaatgacc
     3061 aaatagacgg tcttagagat tcagtaagtt cactaaggtc cactaactaa taagtgacaa
     3121 aactgagcat ccatcctaga tctgcctgac tctaagtcag tgactttgct cccattccat
     3181 actgtttttg tcattggata tcacctggca agtttctgcc taactaaaga gaagaaaagt
     3241 ttttatcgta ttcatactac tgttcaatct ttatttagaa ataaacttta tctatgattt
     3301 cattttctta taaaccagta atcttgcttt tctgggtaaa ttttcagcta ttattactaa
     3361 tgctctgatc tgcccaaatc ttaagtaaaa aacaaaattg aaagagcaaa aaaaaaaaaa
     3421 aaa
//