LOCUS BC045626 3699 bp mRNA linear HUM 03-NOV-2006
DEFINITION Homo sapiens PBX/knotted 1 homeobox 2, mRNA (cDNA clone MGC:39607
IMAGE:5261106), complete cds.
ACCESSION BC045626
VERSION BC045626.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3699)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3699)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (31-JAN-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 63 Row: d Column: 18.
FEATURES Location/Qualifiers
source 1..3699
/db_xref="H-InvDB:HIT000052948_03"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:39607 IMAGE:5261106"
/tissue_type="Brain, hippocampus"
/clone_lib="NIH_MGC_95"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..3699
/gene="PKNOX2"
/gene_synonym="FLJ13074"
/gene_synonym="PREP2"
/db_xref="GeneID:63876"
/db_xref="HGNC:HGNC:16714"
CDS 272..1687
/gene="PKNOX2"
/gene_synonym="FLJ13074"
/gene_synonym="PREP2"
/codon_start=1
/product="PBX/knotted 1 homeobox 2"
/protein_id="AAH45626.3"
/db_xref="GeneID:63876"
/db_xref="HGNC:HGNC:16714"
/translation="MMQHASPAPALTMMATQNVPPPPYQDSPQMTATAQPPSKAQAVH
ISAPSAAASTPVPSAPIDPQAQLEADKRAVYRHPLFPLLTLLFEKCEQATQGSECITS
ASFDVDIENFVHQQEQEHKPFFSDDPELDNLMVKAIQVLRIHLLELEKVNELCKDFCN
RYITCLKTKMHSDNLLRNDLGGPYSPNQPSINLHSQDLLQNSPNSMSGVSNNPQGIVV
PASALQQGNIAMTTVNSQVVSGGALYQPVTMVTSQGQVVTQAIPQGAIQIQNTQVNLD
LTSLLDNEDKKSKNKRGVLPKHATNIMRSWLFQHLMHPYPTEDEKRQIAAQTNLTLLQ
VNNWFINARRRILQPMLDASNPDPAPKAKKIKSQHRPTQRFWPNSIAAGVLQQQGGAP
GTNPDGSINLDNLQSLSSDSATMAMQQAMMAAHDDSLDGTEEEDEDEMEEEEEELEEE
VDELQTTNVSDLGLEHSDSLE"
BASE COUNT 915 a 1095 c 938 g 751 t
ORIGIN
1 gtgccgagca gtgctgggaa gtataggctg tgttgtcacg ccggtgtcag tctgatgaag
61 attggcatca ggtgaagtct ggagcaggac ttctgaggct ttctatcctc catgctgctc
121 actagaaaag gggctgtgaa ctgtgctttg gctctagcag acaggaagaa attctggccc
181 agctggaagt agaaagaggg gagtgagtct cctgaggacc atctcagagg ccccgggatc
241 acccgaacag tcctccatgt gaatcaatcc catgatgcaa catgcctccc cagcccccgc
301 tctgacgatg atggccacgc agaatgtccc gcccccaccc taccaggaca gcccacagat
361 gacggcaacc gcccagccac cctccaaggc ccaggctgtc cacatctctg ccccctcagc
421 tgctgccagc acacctgtgc ccagtgcccc catcgacccc caggcccagc tggaggctga
481 caagcgagct gtatacaggc accctctttt cccgctcctg acgctgctgt ttgagaaatg
541 tgaacaggcc acccagggct ctgagtgcat cacctccgcc agctttgatg tggacatcga
601 gaactttgtc caccagcagg aacaggagca caaacccttc ttcagcgatg acccagaact
661 ggacaatctg atggtgaagg caatccaggt cctgagaatc cacctgctgg agctggagaa
721 agtcaatgaa ctctgcaagg acttttgtaa ccgttacatc acctgcctca aaaccaagat
781 gcacagcgac aacctgctca ggaatgatct aggggggccc tactccccca accagccctc
841 catcaacctt cactcccagg acctcctgca gaattccccc aattccatgt ccggagtctc
901 caataacccc caggggattg tggtcccagc ctcagcgctc cagcagggca acatcgccat
961 gacaaccgtc aactcacaag ttgtgtcagg tggagcctta taccaaccgg ttaccatggt
1021 aacctcccag ggtcaggtgg tcacccaagc aatcccccag ggagccatcc agatccagaa
1081 cacacaggtt aaccttgacc tcacctccct cctggacaat gaggataaga agtccaagaa
1141 caaacgagga gtcttgccca agcatgccac caatataatg cgttcttggc tcttccagca
1201 tctcatgcac ccctacccca cggaggatga gaagaggcag atcgcagccc agaccaacct
1261 caccctcctg caagtaaaca actggttcat caatgcccgg aggcgcatcc tgcagcccat
1321 gcttgatgcc agcaacccag atcctgcccc caaagccaag aagatcaagt ctcagcaccg
1381 gcccacccaa agattctggc ccaactccat cgctgcgggg gtgctgcagc agcagggcgg
1441 tgccccaggg acaaaccccg atggttccat caacttggac aacctgcagt ccctgtcctc
1501 agacagtgcc accatggcca tgcagcaggc tatgatggct gcacacgatg actcattgga
1561 tgggacagaa gaagaggatg aggatgagat ggaagaggag gaggaggagc tggaggagga
1621 ggtcgacgag ctgcagacga caaatgtcag cgacctgggc ttggaacaca gtgactccct
1681 ggagtagtcg ggcagcccag atggcactga tcactgagca ggagaggagt gtcgccggga
1741 ggccttcagg gtggggggga aggggacatg ggcaggaagc accgagggag ttgggcccta
1801 gcttccccaa atcagtagct tgaagaaagg caaaggagac acctgttcct tcccaaccac
1861 cgagcttcaa tgaggacccc agccccactt ccctggaact gccgaggact ctgtttggcg
1921 gggccagtcg agcagcctgt gtggaaagac aggagtgaga tctggactca ccaaatccct
1981 gaggacagat ggcacccatg gcccccaccc acggaaggac ttgagttgtt tacaagccct
2041 gcactgaggc agattggtgc tgttcgcaga gtaggccttt gcccgggggc agacttagaa
2101 ggaaggggag agacaaaggg ggactgagtt tcatccccag aagtttctca gctcctttga
2161 cagacattca agggcaggag ggagccccaa agcataacca gtggccagag gagtgggagg
2221 gcctgaggca tcacatcttg cagatcagaa tgggatggaa tccaccaggc tccagctcat
2281 ccctccaagg ccctgtctct gcgcacagca accatggaca tgggagaaag ggatgggagc
2341 cacagtgccc ttcactctct cctggaaacc aactgtaagc tggtgggctc aacctgtggg
2401 aggttaagag gagtcccttc tgggttgact ccaagagcca aggagatggc agaccctggg
2461 ctaggaacca tatggaggtg actttgaggc cacagctgtc cctaggtgat cacagaactt
2521 agctccttta acaacaggac aatggttttt ttaccctaga tgttcccacc ttcagtgctc
2581 cacgccctcc atagaccttc agagaaggtg aaaccaggtt atctgggaat ctttccagcc
2641 cgcaggtcgc cacggccatc cctttgctcc cagcctggct ccatcagcct ccagcttcct
2701 ttcttcattc tgtccttcag ggaaggcaga agaaacattg gaaagcatct agtccagtgg
2761 gaagccaggg gttggagaag gtgctacatc cctcttccca tcaatatcct aaatgtgggg
2821 gagggcccag agaatggcac ccaagagcct gcggggatgc ccatcccaca caccccaccc
2881 agctgttcta accctgctat ccacagccct ggaggaactg gggctcctgg aaggaggagg
2941 aggctctcca ctgtccaccc taacacatac cctcccaccc accttccaga cccccttggt
3001 tggcaccctc tcctccggtt ccctctcacc ccatggctgt gaatgacagg acaggtcaca
3061 cgtgtgtttt ccattgggtt taatttaatg gacgtgcagt ttcatttgta aattgtgcat
3121 tagccacctc cttcagtggc aggatgtgag tggctacctg gctcaactgg aggggacccc
3181 ttgggccctc tggggcttcc cctcccccac ctggttgggg tagagcaaaa ggatggtcac
3241 tcttccgagg tctccctgaa atgaatgtat ttctccccca aaagagctga tatttaatgt
3301 tttaataagg atttttgaga aacaaataac cttatttata atctgggtga tccaatcatt
3361 ttttactcca ttttgatgcc atacatagag gaaagtctag cttttttggc gtgagacttt
3421 tgcaatgtgc agtgggataa aatgcatttc cttttctggt tcgtttttct tgttaacacg
3481 cgcacacaga cacacacaca caccgttcca ctcaccacct ggacaggcgt cccccagcac
3541 ggacacactg gcacacaggt gcccacatct cttcctctca gcccctccac ctgcctaatg
3601 ttatgcaacc tccttctgat gtatccacca aaccagtact gaatgtggcc gagacgtttt
3661 cagtaaatct tattacctac cgcaaaaaaa aaaaaaaaa
//