LOCUS BC045613 4349 bp mRNA linear HUM 17-JUL-2006
DEFINITION Homo sapiens nuclear receptor subfamily 1, group D, member 2, mRNA
(cDNA clone MGC:33914 IMAGE:5274113), complete cds.
ACCESSION BC045613
VERSION BC045613.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4349)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 4349)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (31-JAN-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 48 Row: f Column: 10
This clone was selected for full length sequencing because it
passed the following selection criteria: Similarity but not
identity to protein.
FEATURES Location/Qualifiers
source 1..4349
/db_xref="H-InvDB:HIT000052944"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:33914 IMAGE:5274113"
/tissue_type="Brain, hippocampus"
/clone_lib="NIH_MGC_95"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..4349
/gene="NR1D2"
/gene_synonym="BD73"
/gene_synonym="EAR-1r"
/gene_synonym="Hs.37288"
/gene_synonym="HZF2"
/gene_synonym="RVR"
/db_xref="GeneID:9975"
/db_xref="HGNC:HGNC:7963"
/db_xref="MIM:602304"
CDS 268..2007
/gene="NR1D2"
/gene_synonym="BD73"
/gene_synonym="EAR-1r"
/gene_synonym="Hs.37288"
/gene_synonym="HZF2"
/gene_synonym="RVR"
/codon_start=1
/product="nuclear receptor subfamily 1, group D, member 2"
/protein_id="AAH45613.1"
/db_xref="GeneID:9975"
/db_xref="HGNC:HGNC:7963"
/db_xref="MIM:602304"
/translation="MEVNAGGVIAYISSSSSASSHASCHSEGSENSFQSSSSSVPSSP
NSSNSDTNGNPKNGDLANIEGILKNDRIDCSMKTSKSSAPGMTKSHSGVTKFSGMVLL
CKVCGDVASGFHYGVHACEGCKGFFRRSIQQNIQYKKCLKNENCSIMRMNRNRCQQCR
FKKCLSVGMSRDAVRFGRIPKREKQRMLIEMQSAMKTMMNSQFSGHLQNDTLVEHHEQ
TALPAQEQLRPKPQLEQENIKSSSPPSSDFAKEEVIGMVTRAHKDTFMYNQEQQENSA
ESMQPKRGERIRKNMEQYNLNHDHCGNGLSSHFPCSESQQHLNGQFKGRNIMHYPNGH
AICIANGHCMNFSNAYTQRVCDRVPIDGFSQNENKNSYLCNTGGRMHLVCPMSKSPYV
DPHKSGHEIWEEFSMSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAGTFEVLMVRF
ASLFDAKERTVTFLSGKKYSVDDLHSMGAGDLLNSMFEFSEKLNALQLSDEEMSLFTA
VVLVSADRSGIENVNSVEALQETLIRALRTLIMKNHPNEASIFTKLLLKLPDLRSLNN
MHSEELLAFKVHP"
BASE COUNT 1320 a 794 c 904 g 1331 t
ORIGIN
1 gggggctgca ggaagccgcc gcgccgccgc ttttgttgtc agggacccag cgaggagcgc
61 cgctcgccgg ccgccgccac cctctctcgc tgcagcctgc tgtgcgctgc acggcctggg
121 gcccgggagc cccgcccgct ctgcccatga gggggccccg cgaccaccgc tgcttccagc
181 ccggggcggc gcggcgctga ggcggcggcg gcggcgctgc cccctctgcg ggaagcgggc
241 ggccccggcc gcctccgcga gggcaccatg gaggtgaatg caggaggtgt gattgcctat
301 atcagttctt ccagctcagc ctcaagccat gcctcttgtc acagtgaggg ttctgagaat
361 agtttccagt cctcctcctc ttctgttcca tcttctccaa atagctctaa ttctgatacc
421 aatggtaatc ccaagaatgg tgatctcgcc aatattgaag gcatcttgaa gaatgatcga
481 atagattgtt ctatgaaaac aagcaaatcg agtgcacctg ggatgacaaa aagtcatagt
541 ggtgtgacaa aatttagtgg catggttcta ctgtgtaaag tctgtgggga tgtggcgtca
601 ggattccact atggagttca tgcttgcgaa ggctgtaagg gtttctttcg gagaagtatt
661 caacaaaaca tccagtacaa gaagtgcctg aagaatgaaa actgttctat aatgagaatg
721 aataggaaca gatgtcagca atgtcgcttc aaaaagtgtc tgtctgttgg aatgtcaaga
781 gatgctgttc ggtttggtcg tattcctaag cgtgaaaaac agaggatgct aattgaaatg
841 caaagtgcaa tgaagaccat gatgaacagc cagttcagtg gtcacttgca aaatgacaca
901 ttagtagaac atcatgaaca gacagccttg ccagcccagg aacagctgcg acccaagccc
961 caactggagc aagaaaacat caaaagctct tctcctccat cttctgattt tgcaaaggaa
1021 gaagtgattg gcatggtgac cagagctcac aaggatacct ttatgtataa tcaagagcag
1081 caagaaaact cagctgagag catgcagccc aagagaggag aacggattcg caagaacatg
1141 gagcaatata atttaaatca tgatcattgc ggcaatgggc ttagcagcca ttttccctgt
1201 agtgagagcc agcagcatct caatggacag ttcaaaggga ggaatataat gcattaccca
1261 aatggtcatg ccatttgtat tgcaaatgga cattgtatga acttctccaa tgcttatact
1321 caaagagtat gtgatagagt tccgatagat ggattttctc agaatgagaa caagaatagt
1381 tacctgtgca acactggagg aagaatgcat ctggtttgtc caatgagtaa gtctccatat
1441 gtggatcctc ataaatcagg acatgaaatc tgggaagaat tttcgatgag cttcactcca
1501 gcagtgaaag aagtggtgga atttgcaaag cgtattcctg ggttcagaga tctctctcag
1561 catgaccagg tcaacctttt aaaggctggg acttttgagg ttttaatggt acggttcgca
1621 tcattatttg atgcaaagga acgtactgtc acctttttaa gtggaaagaa atatagtgtg
1681 gatgatttac actcaatggg agcaggggat ctgctaaact ctatgtttga atttagtgag
1741 aagctaaatg ccctccaact tagtgatgaa gagatgagtt tgtttacagc tgttgtcctg
1801 gtatctgcag atcgatctgg aatagaaaac gtcaactctg tggaggcttt gcaggaaact
1861 ctcattcgtg cactaaggac cttaataatg aaaaaccatc caaatgaggc ctctattttt
1921 acaaaactgc ttctaaagtt gccagatctt cgatctttaa acaacatgca ctctgaggag
1981 ctcttggcct ttaaagttca cccttaaggc ctttgtttat ttaaacatga actgatggta
2041 actgtacatt ttgtgctaaa atgcatattt atatgtgtat accatatgtg gagatagaaa
2101 agacctttaa gacaataaaa gattgtaggc tatctctgta atcatgcaat agctgttcgg
2161 attgagaact cttcagccat gattagacgt tgactgcatc tccctgatag accaatcagc
2221 tgtgtcgcac ttaaactgga gaagttacac tgaagtataa tcacactgaa tgttatactt
2281 tttcatctgc caaaaccaaa aaccattttg atctccctgt ggttatcaat ataacgcaca
2341 atcacaagtg tatgaggact tagaaattaa tcctttgtgg taggagttct gttgaatgat
2401 ggaaatctta ttactaccac aagactattt gttctggtaa ttggagactt cgggatttag
2461 gagatctcca tgtctgtatt tactctacca ctgctaaagt gtgtggtcct gggtagttta
2521 cttgcttgcg gaaaatgaga attgatggtg tccccaatgc cccacctcac agagttacta
2581 aaaaatgtct gtaaagcata tttacctctt gggagatagg cactatgtaa ataaggtaaa
2641 atttctgtta ttacaattat tcataataat attcttttct tatttctaag cctttctggg
2701 aaatcatttc agtccacacc aaccatatta ttcagggttc ctgccatatg tgtggggtat
2761 cctactgata cacacgtatt caaagtttat gggtacaaca aagacatagt acatgtacat
2821 aatatgtatg tgaatatagt taaatatatt tcttcacaat attttaaact gtgaagaact
2881 ttatcataca ggaaacttaa aacaagaggt gtcaaaagac ccaaattagg tgcattttac
2941 ttgtttatga tggcataacc attgctttaa aatgtttaga cagtagaata ttgaatttat
3001 gctctatttt tgtttattta agcaacactt aatgtaaaag tgcaacaggc aattgaatcc
3061 aaatttcaac gacaaaaaaa aaaaacatgt attttagagt tcatctttgg caaaatcttt
3121 ggttcagggt actagttgtt taaaagttga ttcatattct taccttgtgc tgagaaaggt
3181 tgcattgctg ccccttatac acatgctgca gcttgatgtt aaagaatttt tattctttct
3241 gaagaactaa ttaatgttta aagcaactgt ttaatatgat ggcatgtgtg tgtgtgcgtg
3301 cgtgtgtatg ttctgagtcc acttcttttt tcctaaataa cactacaggg attttgtcat
3361 attagattta atttataatt tgaaaaatca tctagtgtgt gacctacagg cttagaaatg
3421 gtatagtcaa agacatttta tccacatttc taatagtgga cttgattaag tagataagat
3481 cagcatctgt ttatggtatt aggagaaata gccaaagttg aggattttat gtatgttttc
3541 ctgtttacct ggaaaatagc aattaattgg attttttggt aaagattgcc ttctgtataa
3601 tgtttggatt atataaaatt gcaaaaatga taacagcccg ctttactgta ctaagcctgt
3661 tactctcatg acgtgtgagc agaatgcctt attttgtaat cttgtttaac ttgttgctac
3721 tgggacttga tttactgtgg cactagttaa gtaagttaaa aaaaagttaa accctctcat
3781 tattaaagag gaaaggcgat ggtgatgtct gtagtacaat ataaaccata attgtgattt
3841 accttaagta ggtataactc ttatgggata tacagtatag tttttgtgaa tctttacatg
3901 atagcattat ctttttataa ttttttttcc taagataaac aaatgcatag ttttcttcta
3961 tgggtgatag aaacagcttt ttgaagtaat gaaaacctca aaagatcatg ttgattctta
4021 atttttgcct tttgcataag cctctttata acatgtatct ttaaaacaat taagtcttta
4081 ggaatgtgta accagaacta tgttagtatt gcttataaaa ctttagttag gttcaatata
4141 tacatatata catctctata taggtatata gatttgcatt ttgtcttgta aaattttatt
4201 tgaataaatt cttcctgtag gtaatgggaa acaaaattaa tagttcatat gtcactcata
4261 gcatttctat atttgaaagt agcccaatat aaaacttttg attctaaaat taaaccagca
4321 gcctattaca agcaaaaaaa aaaaaaaaa
//