LOCUS BC045534 4617 bp mRNA linear HUM 17-JUL-2006
DEFINITION Homo sapiens SWI/SNF-related, matrix-associated actin-dependent
regulator of chromatin, subfamily a, containing DEAD/H box 1, mRNA
(cDNA clone MGC:57132 IMAGE:5267669), complete cds.
ACCESSION BC045534
VERSION BC045534.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4617)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 4617)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (31-JAN-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 106 Row: j Column: 5
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 14149729.
FEATURES Location/Qualifiers
source 1..4617
/db_xref="H-InvDB:HIT000052926"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:57132 IMAGE:5267669"
/tissue_type="Testis"
/clone_lib="NIH_MGC_97"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..4617
/gene="SMARCAD1"
/gene_synonym="DKFZp762K2015"
/gene_synonym="ETL1"
/gene_synonym="KIAA1122"
/db_xref="GeneID:56916"
/db_xref="HGNC:HGNC:18398"
CDS 231..3317
/gene="SMARCAD1"
/gene_synonym="DKFZp762K2015"
/gene_synonym="ETL1"
/gene_synonym="KIAA1122"
/codon_start=1
/product="SWI/SNF-related, matrix-associated
actin-dependent regulator of chromatin, subfamily a,
containing DEAD/H box 1"
/protein_id="AAH45534.1"
/db_xref="GeneID:56916"
/db_xref="HGNC:HGNC:18398"
/translation="MNLFNLDRFRFEKRNKIEEAPEATPQPSQPGPSSPISLSAEEEN
AEGEVSRANTPDSDITEKTEDSSVPETPDNERKASISYFKNQRGIQYIDLSSDSEDVV
SPNCSNTVQEKTFNKDTVIIVSEPSEDEESQGLPTMARRNDDISELEDLSELEDLKDA
KLQTLKELFPQRSDNDLLKLIESTSTMDGAIAAALLMFGDAGGGPRKRKLSSSSEPYE
EDEFNDDQSIKKTRLDHGEESNESAESSNNWEKQESIVLKLQKEFPNFDKQELREVLK
EHEWMYTEALESLKVFAEDQDMQYASQSEVPNGKEVSSRSQNYPKNATKTKLKQKFSM
KAQNGFNKKRKKNVFNQKRVVEDSEYDSGSDVGSSLDEDYSSGEEVMEDGYKGKILHF
LQDASIGELTLIPQCSQKKAQKITELRPFNSWEALFTKMSKTNGLSEDLIWHCKTLIQ
ERDVVIRLMNKCEDISNKLTKQVTMLTGNGGGWNIEQPSILNQSLSLKPYQKVGLNWL
ALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQEGNNGPHLIVVPASTIDNWLREVNL
WCPTLKVLCYYGSQEERKQIRFNIHSRYEDYNVIVTTYNCAISSSDDRSLFRRLKLNY
AIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPVQNNLLELMSLLNFVMPHMFSSS
TSEIRRMFSSKTKSADEQSIYEKERIAHAKQIIKPFILRRVKEEVLKQLPPKKDRIEL
CAMSEKQEQLYLGLFNRLKKSINNLVTEKNTEMCNVMMQLRKMANHPLLHRQYYTAEK
LKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVLCKQYRHINNFQLDMDLILDSG
KFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERIHL
IDEFNTDMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQTK
EALVIKLISQGTIEESMLKINQQKLKLEQDMTTVDEGDEGSMPADIATLLKTSMGL"
BASE COUNT 1516 a 821 c 905 g 1375 t
ORIGIN
1 ccagcacggc ctccgccgct ccccttcttt ggcccctttg tgtccccgca gtgtcgaggc
61 gcgggccctg gcaggtcctt tctcgaggca gggggcacgg tagcacaggg agcttctctt
121 tgtgggcggg cgcgaggccc gctagggggt tatactgggg aacgtgcctg cgcgtgcttg
181 gatagttcat ttaaagcccc catccctgca aggtggtgct ttctaccaat atgaatcttt
241 tcaacctgga ccgttttcgc tttgagaaaa ggaataagat tgaggaagcg cccgaagcaa
301 cccctcaacc ttcccagcct ggcccttctt caccaatttc tcttagtgct gaagaggaga
361 atgctgaagg ggaagttagc agggcaaaca ctcctgattc agatataact gaaaaaacag
421 aagattctag tgttccagaa actccagata atgaaagaaa agcaagtata tcatatttca
481 aaaatcaaag aggaatacag tatattgatt tgtcttctga tagtgaagat gtcgtttccc
541 caaattgctc caatacagtt caagagaaaa cattcaacaa agatacagtg attatagttt
601 ctgagccatc tgaagatgaa gagtcccaag gccttcctac catggcacgt agaaatgatg
661 atatttcaga actggaagac ctttcggaat tggaagacct taaagatgct aaacttcaga
721 ctttgaagga actttttcca caaagaagtg acaatgattt acttaagttg attgaatcaa
781 caagcactat ggatggagca attgctgctg ccttgctgat gtttggtgat gcaggtggtg
841 ggcccaggaa aagaaaatta tcttcttctt cagagccata tgaggaagat gaatttaatg
901 atgatcaatc tataaaaaag acaagactgg atcatggaga ggaatcaaat gagtctgcag
961 aatctagcaa taattgggaa aagcaggaaa gtattgtact gaaattgcaa aaggaatttc
1021 ccaattttga taaacaggaa cttagagaag tactcaagga acatgaatgg atgtacacag
1081 aagctttaga atctctaaaa gtgtttgcag aagaccaaga tatgcaatat gcatcacaaa
1141 gtgaggttcc aaatggaaaa gaagtttctt caagaagtca aaattaccct aaaaatgcaa
1201 ctaaaacaaa actaaaacag aaattttcaa tgaaagcaca aaatggcttt aacaagaaac
1261 gtaaaaaaaa tgtttttaat caaaagagag ttgttgaaga ctctgaatat gattcaggtt
1321 ctgatgtcgg tagttcacta gatgaggact atagtagtgg tgaagaagtg atggaggatg
1381 gctataaagg taaaattctt cacttccttc aagatgcttc aattggtgaa cttactttga
1441 ttcctcagtg ttctcagaaa aaggctcaga agataacaga actccggccc tttaatagtt
1501 gggaggctct gttcacaaag atgtccaaaa ctaatggctt atcagaagat ttgatatggc
1561 actgtaaaac actgatccaa gaaagagatg tagttataag gcttatgaac aaatgtgaag
1621 acatttcaaa taaattgacc aaacaagtta ccatgcttac tggaaatgga ggtggatgga
1681 acatagaaca accttccatt ctaaaccaga gtttgtcact caagccctat cagaaggttg
1741 gtttgaattg gctggcattg gtacataaac atggacttaa tggcattttg gcagatgaaa
1801 tgggcctagg aaaaactatt caagccattg catttctggc atacctctat caggagggta
1861 ataatggtcc tcatttgatc gttgttccag cttcaactat agataactgg ttaagggaag
1921 ttaatttatg gtgccctact ttgaaggtcc tctgttacta tggttctcaa gaagaacgta
1981 aacaaattag atttaacatt catagtagat atgaagatta caatgtaatt gtgaccacat
2041 ataactgtgc gatcagcagt tctgatgatc gtagtctgtt tcgacggctg aaacttaatt
2101 acgcaatttt tgatgagggc catatgctga agaatatggg ctccattcgc taccagcacc
2161 ttatgacaat taatgcaaat aaccgtttgc tgctcacagg cacacctgta cagaacaatc
2221 tgttagaact catgtcgctg ttgaattttg ttatgccaca catgtttagt agtagcacca
2281 gtgaaatacg aagaatgttt tcctctaaga caaaatcagc agatgagcaa agcatatatg
2341 aaaaggagag aatagcacat gcaaaacaaa ttataaagcc atttattctc agaagagtaa
2401 aagaagaggt tctcaagcag ttacccccca agaaagatcg aattgagttg tgtgcaatgt
2461 cggagaagca ggagcaactc tatttgggtc ttttcaacag attgaaaaaa tctatcaata
2521 acttggtcac agaaaaaaac acagaaatgt gcaatgtcat gatgcagttg aggaaaatgg
2581 ccaatcatcc tttattacat cgccaatatt acacagctga aaaactcaag gaaatgtctc
2641 agcttatgct aaaggaacct acacattgtg aggctaaccc tgacctgatc tttgaagata
2701 tggaagttat gacagacttc gaactacatg tactttgtaa acagtaccga cacattaata
2761 actttcagtt agacatggac ttgattttag attctggaaa atttcgagtt ttaggatgca
2821 tcttgtctga attgaaacag aagggtgata gagttgtgtt atttagccaa tttaccatga
2881 tgctggatat cttagaggtt ctattaaaac atcatcagca taggtacctc agattagatg
2941 gaaagactca gatttctgaa aggattcatc taattgatga gtttaatacc gatatggata
3001 tctttgtgtt tctgctatca acaaaagctg gtggattagg aataaatctg acttcagcaa
3061 atgttgttat acttcacgat attgactgta atccttataa tgacaaacaa gcagaagata
3121 gatgccatag agtaggccag actaaagaag cactagttat aaaactaata agccaaggga
3181 cgattgaaga atccatgcta aaaattaacc aacagaaatt gaaactagaa caggatatga
3241 ctacagtaga tgaaggtgat gaagggagta tgccagcaga tatagccaca ttactaaaaa
3301 catcaatggg cctgtgaaat aagaactgtg aactctcaat tgatgaggaa atatcaactt
3361 ggtgcactca aggacattta cattatgatg accatggggt ttatgaacat ttataacttt
3421 ttataatttc catattacat ttctcatagt atggacaact ttttgccact aactgaattc
3481 tccaaatact cacacgtgaa atttcaaaaa agaagccaca aatatgtagt tctgaagatg
3541 ttgaataatc attttacaaa gcagttttct gaatggggat tagttggtga ttgtttgtaa
3601 caaatatgct aatgctttag aaatgtcagt atttttgtaa ttatttctac ctccaaatat
3661 atatatattg tctttcactg gataatgtgt gtagattttt acatgtgcct tatttgacaa
3721 tgcttatgtc ttgtttttgc ttgtctcatt tgaagttctt ttttattatg ttaaagaatg
3781 cagctgtata gattatatag ctttcatttt attgctattt gaagcagatg ttcaccaatg
3841 tcagcaagaa ctcaacctga atttaaaggt ggcattccat atactaacat cccccaggtc
3901 ctctcaagta cttctgctga aacaaattta tttggctagg cactaagttg ttttccagtg
3961 aatagtaact aaagaagccc ctaccttgct ccatggatta attccttctg ttcattttcc
4021 aactgcgcta attgtgcata ttactctgcc taatcttgtg catgttttca ttgatttccc
4081 tctcccggct tttgcttctc ttgaaactgt tgcccagtca cttctgctcc aattctcttc
4141 ctctctaaat agtagtttat tactgccaca tctccatgca tcagcaaaat gttggtgaca
4201 tttttctagc ctggcagaac agattactta aagctatttc acttcaaagc agactgaatg
4261 tgacttcatc taaaggcagc attaggtact gcatggaaat aggtcattaa cttgaaactc
4321 ttatcaaaat atattttacc agtttccaga atttccagta caggaccgcc tgaagagaga
4381 gccattgttc aattccaatt cagtgtgagt gacaaagtga aatttagaag tgaagttgtc
4441 tatttgatat ttaactcttt attaaatctt tctttaaatt tctgcctgtc agtctatatt
4501 gctgttttta ttatacatca gtttctttgt ataacttgtg agttccatgt gttttgtttt
4561 tattatgtaa atatcattat aaataaactt atttataaat caaaaaaaaa aaaaaaa
//