LOCUS BC044855 1791 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens homeobox D9, mRNA (cDNA clone MGC:34365
IMAGE:5191006), complete cds.
ACCESSION BC044855
VERSION BC044855.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1791)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1791)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (23-JAN-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Life Technologies, Inc.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 50 Row: j Column: 3.
FEATURES Location/Qualifiers
source 1..1791
/db_xref="H-InvDB:HIT000052900"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:34365 IMAGE:5191006"
/tissue_type="Colon, Kidney, Stomach, adult, whole pooled"
/clone_lib="NIH_MGC_116"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1791
/gene="HOXD9"
/gene_synonym="Hox-4.3"
/gene_synonym="Hox-5.2"
/db_xref="GeneID:3235"
/db_xref="HGNC:HGNC:5140"
/db_xref="MIM:142982"
CDS 115..1143
/gene="HOXD9"
/gene_synonym="Hox-4.3"
/gene_synonym="Hox-5.2"
/codon_start=1
/product="homeobox D9"
/protein_id="AAH44855.2"
/db_xref="GeneID:3235"
/db_xref="HGNC:HGNC:5140"
/db_xref="MIM:142982"
/translation="MSSSGTLSNYYVDSLIGHEGDEVFAARFGPPGPGAQGRPAGVAD
GPAATAAEFASCSFAPRSAVFSASWSAVPSQPPAAAAMSGLYHPYVPPPPLAASASEP
GRYVRSWMEPLPGFPGGAGGGGGGGGGGPGRVPALAPAAQPTGCHYGIKPETRAAPAP
ATAASTTSSSSTSLSSSSKRTECSVARESQGSSGPEFSCNSFLQEKAAAATGGTGPGA
GIGAATGTGGSSEPSACSDHPIPGCSLKEEEKQHSQPQQQQLDPNNPAANWIHARSTR
KKRCPYTKYQTLELEKEFLFNMYLTRDRRYEVARILNLTERQVKIWFQNRRMKMKKMS
KEKCPKGD"
BASE COUNT 307 a 561 c 567 g 356 t
ORIGIN
1 cgcgaccaat ggtggaggct gcagcctgcg aactagtcgg tggctcgggc gccggcgggg
61 agctgctcgg cggcggacag tgtaatgttg ggtgggagtg cgggacgcct caaaatgtct
121 tccagtggca ccctcagcaa ctactacgtg gactcgctta taggccatga gggcgacgag
181 gtgttcgcgg cgcgcttcgg gccgccgggg ccaggcgcgc agggccggcc tgcaggtgtg
241 gctgatggcc cggccgccac cgccgccgag ttcgcctcgt gtagttttgc ccccagatcg
301 gccgtgttct ctgcctcgtg gtccgcggtg ccctcccagc ccccggcagc ggcggcgatg
361 agcggcctct accacccgta cgttcccccg ccgcccctgg ccgcctctgc ctccgagccc
421 ggccgctacg tgcgctcctg gatggagccg ctgcccggct tcccgggcgg tgcgggcggt
481 ggcggtggtg gtggaggcgg cggtccgggc cgggtcccag ccctggcccc agcggcccag
541 ccaacgggct gccactacgg gattaagcct gaaacccgag cggccccggc ccccgccacg
601 gccgcctcca ccacctcctc ctcctccact tccttatcct cctcctccaa acggactgag
661 tgctccgtgg cccgggagtc ccaggggagc agcggccccg agttctcgtg caactcgttc
721 ctgcaggaga aggcggcagc ggcgacgggg ggaaccgggc ctggggcagg gatcggggcc
781 gcgactggga cgggcggctc gtcggagccc tcagcttgca gcgaccaccc gatcccaggc
841 tgttcgctga aggaggagga gaagcagcat tcgcagccgc agcagcagca acttgaccca
901 aacaaccccg ccgcgaactg gatccacgct cgctccaccc ggaaaaagcg ctgtccctac
961 accaaatacc agacgcttga gctggagaaa gaattcctct tcaacatgta cctcacccgg
1021 gaccggcgct acgaggtggc caggattctc aacctaacag agagacaggt caaaatctgg
1081 tttcagaacc gtaggatgaa aatgaaaaag atgagcaagg agaaatgccc caaaggagac
1141 tgacccggcg cggtgctggc gggagcgctc aagggcagcg gatttgttgt tgttgctgtt
1201 ttcctttgtg ggtgtttggt gcttgatttc cagaaactct ccagcgactt ggacttcttc
1261 ttcttttttt ttttcttttt agatagaagt gactgtgtgg ttggtctctg aggtatttgg
1321 gggactctgt atttgctcgt ttacgtgttg gaaaaaccaa gtggctttgg ggtttcgccc
1381 tatcccactc cctctctttc ctgctccatt ggttccttaa gaaatgctat attttgtgag
1441 tgcaagctgg cttggggagc cctctcttgt gtaaatgtcc cccatgtttc tgaaaagtgc
1501 tgtagtttag tcccctcacc cccagcactg cccaaacagg ggccaagtgc gccccaattc
1561 caagaatgaa ggcagagcga caacagtgcg gacaccccgg ctgctagccc acggtgaagc
1621 ccggcggggt tgcccaccag ttgcgaaagc cccctttcct cagggagcac gcgggacctc
1681 ggtggagatc tccagtgagg cttagaggag cccagggcct cgggcgggtt ggggtttgtc
1741 ctcagtgcat tggacgcgct gctctctccc ctgaaggctg ggctcgcgtg g
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