LOCUS BC044659 5326 bp mRNA linear HUM 02-DEC-2006 DEFINITION Homo sapiens helicase-like transcription factor, mRNA (cDNA clone MGC:47741 IMAGE:6015181), complete cds. ACCESSION BC044659 VERSION BC044659.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 5326) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 5326) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (17-JAN-2003) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: ATCC cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: National Institutes of Health Intramural Sequencing Center (NISC), Gaithersburg, Maryland; Web site: http://www.nisc.nih.gov/ Contact: nisc_mgc@nhgri.nih.gov Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B., Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S., Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P., Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R., Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C., McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W., Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L., Young,A., Zhang,L.-H. and Green,E.D. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 82 Row: m Column: 14 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 21071051. FEATURES Location/Qualifiers source 1..5326 /db_xref="H-InvDB:HIT000052891" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:47741 IMAGE:6015181" /tissue_type="Testis, embryonal carcinoma" /clone_lib="NIH_MGC_92" /lab_host="DH10B" /note="Vector: pCMV-SPORT6" gene 1..5326 /gene="HLTF" /gene_synonym="HIP116" /gene_synonym="HIP116A" /gene_synonym="HLTF1" /gene_synonym="RNF80" /gene_synonym="ZBU1" /db_xref="GeneID:6596" /db_xref="HGNC:HGNC:11099" /db_xref="MIM:603257" CDS 187..3213 /gene="HLTF" /gene_synonym="HIP116" /gene_synonym="HIP116A" /gene_synonym="HLTF1" /gene_synonym="RNF80" /gene_synonym="ZBU1" /codon_start=1 /product="helicase-like transcription factor" /protein_id="AAH44659.1" /db_xref="GeneID:6596" /db_xref="HGNC:HGNC:11099" /db_xref="MIM:603257" /translation="MSWMFKRDPVWKYLQTVQYGVHGNFPRLSYPTFFPRFEFQDVIP PDDFLTSDEEVDSVLFGSLRGHVVGLRYYTGVVNNNEMVALQRDPNNPYDKNAIKVNN VNGNQVGHLKKELAGALAYIMDNKLAQIEGVVPFGANNAFTMPLHMTFWGKEENRKAV SDQLKKHGFKLGPAPKTLGFNLESGWGSGRAGPSYSMPVHAAVQMTTEQLKTEFDKLF EDLKEDDKTHEMEPAEAIETPLLPHQKQALAWMVSRENSKELPPFWEQRNDLYYNTIT NFSEKDRPENVHGGILADDMGLGKTLTAIAVILTNFHDGRPLPIERVKKNLLKKEYNV NDDSMKLGGNNTSEKADGLSKDASRCSEQPSISDIKEKSKFRMSELSSSRPKRRKTAV QYIESSDSEEIETSELPQKMKGKLKNVQSETKGRAKGSSKVIEDVAFACALTSSVPTT KKKMLKKGACAVEGSKKTDVEERPRTTLIICPLSVLSNWIDQFGQHIKSDVHLNFYVY YGPDRIREPALLSKQDIVLTTYNILTHDYGTKGDSPLHSIRWLRVILDEGHAIRNPNA QQTKAVLDLESERRWVLTGTPIQNSLKDLWSLLSFLKLKPFIDREWWHRTIQRPVTMG DEGGLRRLQSLIKNITLRRTKTSKIKGKPVLELPERKVFIQHITLSDEERKIYQSVKN EGRATIGRYFNEGTVLAHYADVLGLLLRLRQICCHTYLLTNAVSSNGPSGNDTPEELR KKLIRKMKLILSSGSDEECAICLDSLTVPVITHCAHVFCKPCICQVIQNEQPHAKCPL CRNDIHEDNLLECPPEELARDSEKKSDMEWTSSSKINALMHALTDLRKKNPNIKSLVV SQFTTFLSLIEIPLKASGFVFTRLDGSMAQKKRVESIQCFQNTEAGSPTIMLLSLKAG GVGLNLSAASRVFLMDPAWNPAAEDQCFDRCHRLGQKQEVIITKFIVKDSVEENMLKI QNKKRELAAGAFGTKKPNADEMKQAKINEIRTLIDL" BASE COUNT 1790 a 867 c 1075 g 1594 t ORIGIN 1 gaaggagacg gcgtcgacgt ctgactggac tcgcggcgac ttacctttca gtcgtgcgct 61 cctgatccgg cgctcggaat ttgtccccgg cttcagggct gcggggcctg gaaggaggcg 121 tatcgaggcg gctcgaaaac gatccagggg agccgaggcg ctcctcttgt catcccactc 181 agcgccatgt cctggatgtt caagagggat ccagtttgga agtacttgca gactgtccag 241 tatggagttc atggaaattt tccacgcctc tcatatccaa ctttctttcc acgttttgaa 301 ttccaagatg ttatccctcc agatgacttt ctaactagtg atgaagaagt agattccgtt 361 ttatttggaa gtttgagagg tcatgtggtt ggactacgct attacacggg agtagttaat 421 aataatgaaa tggttgcatt acaacgagat cctaataacc cttatgataa gaatgcaatt 481 aaagtaaaca atgtgaatgg aaatcaagtt ggccatttaa agaaagagct tgcaggtgct 541 ttggcctata tcatggacaa caaattggca caaattgaag gggtagttcc ttttggtgca 601 aacaatgctt ttaccatgcc tctgcatatg actttttggg gaaaagaaga aaatagaaaa 661 gcggtttcag atcagttgaa gaaacatgga tttaaattgg gtcctgcacc aaaaacttta 721 ggattcaatt tggaaagtgg ttggggctct ggaagagctg gaccaagcta tagtatgcca 781 gtgcatgctg cagtacagat gacaactgaa cagcttaaaa cagaatttga caaattgttt 841 gaagatttaa aagaagatga taaaacccat gaaatggaac cagctgaggc tattgaaaca 901 ccactgcttc cacatcaaaa acaagctcta gcttggatgg tgtcacggga aaatagcaaa 961 gaacttccac cattctggga acagcgaaat gacttatact ataacacaat aacaaatttt 1021 tctgagaagg accgaccaga aaatgtccat ggaggaattt tagctgatga tatgggtttg 1081 ggtaaaactc ttacagccat tgcagtaatc cttaccaact tccatgatgg cagacctctt 1141 cctattgaaa gagttaaaaa gaatctactg aagaaggaat ataatgttaa cgatgactct 1201 atgaaacttg gaggaaacaa taccagtgaa aaggcagatg gactaagcaa agacgcatct 1261 agatgtagtg aacaacccag tatttcagat atcaaggaga agagtaagtt tcgcatgtca 1321 gaattgtcta gctcccgccc caaaagaaga aaaactgctg tccagtacat agaaagcagt 1381 gattcagagg aaattgaaac aagtgaattg ccgcagaaaa tgaaaggcaa actgaaaaat 1441 gtacagtctg aaactaaagg cagggcgaaa ggatcttcta aggttataga agatgtggca 1501 tttgcatgtg cattaacttc atctgttcct acaacaaaaa agaaaatgtt gaaaaaggga 1561 gcttgtgcag tggaggggtc aaagaaaact gatgttgagg agagaccaag aacaacactg 1621 atcatctgtc cgctttctgt gttaagcaac tggattgacc agtttggaca acatataaaa 1681 tcagatgtac acttgaattt ttatgtttat tatggtcctg atcgtattag agaaccggcc 1741 ttactttcaa aacaggatat tgttttgact acgtataata ttttaactca tgactatgga 1801 actaaaggag atagtccatt acatagcata aggtggctaa gagtgatcct ggatgaagga 1861 catgccatac gaaatccaaa tgctcagcag acaaaagctg tacttgactt agaatcagaa 1921 agaagatggg ttttgacagg tactccaatc cagaattctt taaaggactt gtggtctctt 1981 ctttcctttt taaaacttaa accatttatt gatagagaat ggtggcatag aacaatacag 2041 cgtcctgtca caatgggaga tgaaggagga cttaggcgtt tacagtccct aattaaaaat 2101 attacactta gaagaacaaa gacaagcaaa attaaaggaa aacctgtttt ggagttacca 2161 gaacgtaaag tatttattca gcacattaca ctttcagatg aagagagaaa gatttatcag 2221 tctgtgaaaa atgaaggcag agccactatt ggaaggtatt ttaatgaagg gactgtcctg 2281 gcacattatg cagatgtcct gggtcttttg cttagactgc ggcaaatttg ttgccatact 2341 taccttctta caaatgcagt gtcttccaat ggcccctcag gaaatgatac acctgaagaa 2401 ctgagaaaga agttaataag gaagatgaag ttaattctga gctcaggttc agatgaggaa 2461 tgtgcaattt gcctggattc tttaacagtt cctgtgataa cacattgtgc acatgtattt 2521 tgtaaaccct gtatttgcca agtcattcag aatgagcagc cacatgctaa atgcccttta 2581 tgcagaaatg atatacatga agataattta ttagaatgtc ctccagaaga attagcacgt 2641 gacagtgaga aaaagtctga tatggaatgg acatccagtt caaagattaa tgcgctaatg 2701 cacgcattga ctgacttaag aaagaagaat cccaacataa aaagtttggt tgtttctcag 2761 tttacaacat tcctgtcttt aatagaaata ccacttaaag cctctggatt tgtgtttact 2821 cgtttggatg gttccatggc ccaaaagaaa agagttgaat caattcagtg ttttcaaaac 2881 actgaagcag gatctccaac tataatgctt ctgtccttaa aagcaggtgg agttggtttg 2941 aatctgtctg cagcttctcg agtgttttta atggatccag cctggaatcc tgctgctgaa 3001 gatcagtgct ttgacagatg ccatagactt ggtcagaagc aagaagttat catcacaaaa 3061 ttcattgtaa aggactctgt tgaagaaaat atgctgaaaa tacaaaacaa aaagagagaa 3121 cttgcagcag gagcctttgg aactaaaaaa ccaaatgctg acgaaatgaa acaagccaaa 3181 attaatgaaa tcagaacatt aattgactta taatttgtgg gattttagta aggtcagttt 3241 gattggatac ttaagtttta gaaatgagaa aaatacagag ttttagaaat gagatctaga 3301 gaacacgtct tctaaaaggg gcatatttta tattagtgaa gaggtattac tgacacaatt 3361 tcttctatat atgaacctat ttttaatgaa acttcaaata gcaataagtt ccgttatata 3421 ctgtggcctg aaataatttg agaaaaaagg ttactttgtt attcagcttt tcataatatc 3481 tatgctgagt attttcacgt atcttccaag tactcagctt tttcgtattt caaataaggt 3541 cagacctttt atacttttga ccaaatagtt attttctatg ttggacactt agttatttgc 3601 caaagcctcc gatttgtgat gcagtgtttg tagtccttgt aaacaatata tacagactat 3661 acaagaatta attttattgg gctttcaaaa accatatttg cattccagaa ccaaatctta 3721 aatgagacca aagtccaggt tagcacaggt ttttattttt cctacagcta cattgagata 3781 tagttcacat aaatgacttg gagttttatg ttcatgaaaa aattagggat tatgttaaga 3841 gtactatttt ttccatttta gttaagtagt actacactca ttgtttaaat gtaacttgct 3901 gtgtctgagg tataaatata gtctgtggga gtgagaggca aaccagtcct acccaatttg 3961 atttgaatat tttaaattat ggaactgcta aatagatatt tctataaata gataattttt 4021 atttatgtag ctttttttgg aagtaacttt ataaattttt ataattcaga agactactat 4081 atgtgagagg cgtgatatct ggatggaagt tgggctggat gatctccaaa gtcgtttcaa 4141 ctcttaaaga catcttaatc ctgaatgtaa acaattgtta tgtgtttaga atcagaattt 4201 gattttgaac ttgagtaatt catccttaca gctatctgta gaattagtca tcttttttct 4261 tttctttttt ttttactttt ttgttaataa gcaaacttat ttgctgcaga atttgggttg 4321 actcctgagc atatttaaaa caaagaagct agaaatttag cagtcagatt aggtaggtgg 4381 ttttatttca aagggaaact ttaatccaaa gaaagattaa ttactctaac aaacaagaga 4441 agcttcatgt ttgatgatac agatttaaga atacctgaga cttaagagtg ttggaagtca 4501 tttgatagaa agatgagatc ggagacaatg ttgtgttata gggcacacat tgaaggtata 4561 tgccaaatct ctcaccagat aagtcctttt ctccctgtgc cgttttcttg ctcaaaggga 4621 acagtgaatt agccagctag aatcttcctg gtcccttttt gaggcagtag caggtaagga 4681 aagggctgat tttcatcaaa accaagacct ttctgcaggg atgatagtgg aataataatg 4741 tgggattagc ccgctagcat taggagcagt tgggaagtta cctggtagat caagcattac 4801 acacaaaaaa tcaagttgat cagagtatgg gttctccata tagcaatact tcagtgagat 4861 taagtataaa cagtttttgg caaaaaacaa cacagtctac tctttctgct tacaaagaca 4921 aagccttaca aactcactat gaaggtaaag ggaggacagc ttgcttcttt gcccagacat 4981 ttacaaagtt gtttttaaaa cacactcata agtaagtttg gcaagttgtt taaaaaatgt 5041 ctctttgttt tgtacagttc tgttagatgt tgttatattt taaaagttta atttaaaaaa 5101 tttaatttgt ccttcctaag aaggataaat atataaaaaa gccactggaa tgaaaacttc 5161 ctatatgcta tgctgttgtc ttattattat atagaaaaat aactttagaa aaatattgaa 5221 gacattgtat taccacttgt gattcaaaca attttgtggt taaaactgga ttttaaattt 5281 aaaaatcaat aaaaatttca aatgttaaaa aaaaaaaaaa aaaaaa //