LOCUS BC044640 2641 bp mRNA linear HUM 28-JUL-2006
DEFINITION Homo sapiens phosphatidylinositol glycan anchor biosynthesis, class
Z, mRNA (cDNA clone MGC:52163 IMAGE:4871581), complete cds.
ACCESSION BC044640
VERSION BC044640.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2641)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2641)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (17-JAN-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC/DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 44 Row: f Column: 5
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 30581136.
FEATURES Location/Qualifiers
source 1..2641
/db_xref="H-InvDB:HIT000052882"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:52163 IMAGE:4871581"
/tissue_type="Skin, melanotic melanoma, high MDR."
/clone_lib="NIH_MGC_49"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2641
/gene="PIGZ"
/gene_synonym="FLJ12768"
/gene_synonym="MGC52163"
/gene_synonym="SMP3"
/db_xref="GeneID:80235"
/db_xref="HGNC:HGNC:30596"
CDS 68..1807
/gene="PIGZ"
/gene_synonym="FLJ12768"
/gene_synonym="MGC52163"
/gene_synonym="SMP3"
/codon_start=1
/product="phosphatidylinositol glycan anchor biosynthesis,
class Z"
/protein_id="AAH44640.1"
/db_xref="GeneID:80235"
/db_xref="HGNC:HGNC:30596"
/translation="MQICGSSVASVAAGTSFQVLGPVCWQQLDLKMAVRVLWGGLSLL
RVLWCLLPQTGYVHPDEFFQSPEVMAEDILGVQAARPWEFYPSSSCRSVLFPLLISGS
TFWLLRLWEELGPWPGLVSGYALLVGPRLLLTALSFALDGAVYHLAPPMGADRWNALA
LLSGSYVTLVFYTRTFSNTIEGLLFTWLLVLVSSHVTWGPTRKEPAPGPRWRSWLLGG
IVAAGFFNRPTFLAFAVVPLYLWGTRGATNPGLKSLTREALVLLPGATLTAAVFVATD
SWYFSSPATSRNLVLTPVNFLHYNLNPQNLARHGTHARLTHLAVNGFLLFGVLHAQAL
QAAWQQLQVGLQASAQMGLLRALGARSLLSSPRSYLLLLYFMPLALLSAFSHQEARFL
IPLLVPLVLLCSPQTQPVPWKGTVVLFNALGALLFGCLHQGGLVPGLEYLEQVVHAPV
LPSTPTHYTLLFTHTYMPPRHLLHLPGLGAPVEVVDIGGTEDWALCQTLKSFTRQPAC
QVAGGPWLCRLFVVTPGTTRRAVEKCSFPFKNETLLFPHLTLEDPPALSSLLSGAWRD
HLSLHIVELGEET"
BASE COUNT 475 a 846 c 708 g 612 t
ORIGIN
1 ctgggaccct ggccctcgcc gggcaggacg ccgccagcgc tgaaggcgca gcccggaggc
61 cgcgcggatg cagatctgtg gatccagcgt agcatctgta gcagctggga catcattcca
121 ggttttgggc ccggtgtgtt ggcaacaact ggatctgaag atggcagtca gggtgctttg
181 gggtggtctc agcctgctcc gagtgctgtg gtgtctcctt ccgcagacgg gctatgtgca
241 cccagatgag ttcttccagt cccctgaggt gatggcagag gacatcctgg gcgttcaggc
301 cgcgcggccc tgggagtttt accccagcag ctcctgccgc tcggtgctct tccccctgct
361 gatctccggt tccaccttct ggctgctcag gctctgggag gagctggggc cgtggcctgg
421 cctggtgagc ggctatgcgc tgctggtggg gcctcgactc ctcctcactg ccctttcctt
481 tgctctggac ggggccgtgt accacctggc cccgccgatg ggggcggatc gctggaacgc
541 cctggccctg ctgtctggtt cctacgtcac cctggtcttc tacacaagga ccttctccaa
601 caccattgag ggactcctct tcacgtggct gctggtgctg gtatcctccc atgtaacgtg
661 gggccctaca cgcaaggagc cggcgccggg tccacggtgg cgcagctggc ttcttggagg
721 cattgtggct gctggcttct tcaaccggcc cacctttctg gcctttgctg tggtccccct
781 ctacctctgg ggcactcgtg gagccacaaa ccctggtttg aagtctctga cccgggaggc
841 cctggtgctg ctccctgggg cgaccctcac agcagcggtg tttgtggcca cggacagctg
901 gtatttctcc agccccgcta catccaggaa ccttgtcctg acacctgtca acttcctgca
961 ctacaacctg aatccccaaa acctggcgag acatggcacg cacgcgcggc tcactcacct
1021 ggcagtcaac ggcttcctgc tcttcggggt gctgcatgcc caggccctgc aggctgcgtg
1081 gcaacagctg caagtcggcc tccaggcctc tgcacaaatg ggcctcctga gggcactggg
1141 tgcccggagc ctgctgtcca gccccaggtc ctatctcctt ctcctctact tcatgcctct
1201 ggccctgcta tctgccttta gccaccagga ggctcggttc ctgattcccc tcctggtccc
1261 cctggtcctg ctttgtagtc cacagacgca gcctgtgcct tggaagggca ctgtggtcct
1321 cttcaacgcc ctcggtgccc tcctcttcgg ctgcctgcat caggggggcc tggtgcctgg
1381 cctggagtac ctggagcagg tggtccatgc ccctgtgctc ccaagcacac ccacccacta
1441 cacactcctc ttcactcaca cctacatgcc cccccggcac ctcctacacc tcccaggcct
1501 gggggcacca gtggaggtgg tggacatagg ggggactgag gactgggccc tgtgccaaac
1561 cctgaaaagc ttcaccagac aaccagcctg ccaagtggct ggtgggccat ggctctgccg
1621 cctctttgtg gtaacccctg gcaccaccag gcgtgccgtg gagaagtgca gcttcccctt
1681 caagaatgaa acacttttat ttccccatct gaccctggag gatccaccag ccctgtcctc
1741 cttgctgagt ggggcttgga gggaccacct cagtcttcac attgtggagc tgggggaaga
1801 aacctgacaa tatgacagag cacccactgc ccaagactca gccatagaag atgccgcccc
1861 accttctact tgggtagctg ggctgggacg ctgggacagg accccgtcct ccttcatgac
1921 tcccactgct gcctctcctg ggcatggctg ttagctgttc tgccttctgg gtgagctggc
1981 actcttctcc ctgagaccaa agatttgacc tgtcggtctt gatgtcaagg tccccaaaga
2041 ccaggttaag tgacgacacc tgtctgttcc tgccctgttg cttccagcca ctgtgatgtt
2101 tgaaatatgt gatagtacct ggttgtgaaa aaagacaatg aactgctagt gacattcctc
2161 aatgacctct cccaaacctc ccatgatgcc ttacccttgc tgtcatgaca accctctggc
2221 ttcctaagac ccatctgcct atcgaaatat gtgcaagtca gtgagacgaa gtatagagaa
2281 caggtggccc agatccaggg gacccaactt ctggcccctt ggtctgtcac ctcctcgctg
2341 tgtgatcttg agaaagctcc ttccactcac ccaccccact tcccagtctg ttgggatcag
2401 aggaactttg aggtgtctgc cggctaacat tgtgtcattc ctggagtcca cagtacacgt
2461 cccctgcctc aacaggcaca gctctcacaa agctcttcaa gcatggaagt gggagttgtg
2521 ttgtacttca tggcactctg atgcctgctg tctcagtgtt tggttattat gcaaacaagt
2581 aatgtttgaa atatataata gcactggaga ttttctccct aaaaaaaaaa aaaaaaaaaa
2641 a
//