LOCUS BC044593 1194 bp mRNA linear HUM 21-JUL-2005
DEFINITION Homo sapiens Bardet-Biedl syndrome 5, mRNA (cDNA clone MGC:57229
IMAGE:5272889), complete cds.
ACCESSION BC044593
VERSION BC044593.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1194)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1194)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (17-JAN-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 106 Row: l Column: 17
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 22748822.
FEATURES Location/Qualifiers
source 1..1194
/db_xref="H-InvDB:HIT000052877"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:57229 IMAGE:5272889"
/tissue_type="Testis"
/clone_lib="NIH_MGC_97"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..1194
/gene="BBS5"
/db_xref="GeneID:129880"
/db_xref="MIM:603650"
CDS 56..1081
/gene="BBS5"
/codon_start=1
/product="BBS5 protein"
/protein_id="AAH44593.1"
/db_xref="GeneID:129880"
/db_xref="MIM:603650"
/translation="MSVLDALWEDRDVRFDLSAQQMKTRPGEVLIDCLDSIEDTKGNN
GDRGRLLVTNLRILWHSLALSRVNVSVGYNCILNITTRTANSKLRGQTEALYILTKCN
STRFEFIFTNLVPGSPRLFTSVMAVHRAYETSKMYRDFKLRSALIQNKQLRLLPQEHV
YDKINGVWNLSSDQGNLGTFFITNVRIVWHANMNDSFNVSIPYLQIRSIKIRDSKFGL
ALVIESSQQSGGYVLGFKIDPVEKLQESVKEINSLHKVYSASPIFGVDYEMEEKPQPL
EALTVEQIQDDVEIDSDGHTDAFVAYFADGNKQQDREPVFSEELGLAIEKLKDGFTLQ
GLWEVMS"
BASE COUNT 420 a 191 c 247 g 336 t
ORIGIN
1 gacgcagcta ggcctccacg gctgtggaga gatcctgcca cgggccttgt tcaccatgtc
61 ggtgctggat gcgctttggg aggatcggga tgtccgtttc gacctgtccg cgcagcaaat
121 gaaaacaaga cctggagaag tccttattga ttgtttagat tccattgaag acaccaaagg
181 aaataatgga gatagaggta gactcttggt aacaaattta agaattctct ggcactcttt
241 ggcattatca agagtcaatg tttctgtcgg ttacaattgc atattgaata ttacaacaag
301 gactgctaac tctaaattac gaggccaaac tgaagctctc tatatactaa caaaatgtaa
361 cagtactcgt tttgaattta tatttacaaa tttggttcct ggaagcccta gactttttac
421 ttctgtgatg gcagtacaca gagcttatga aacttctaaa atgtatcgtg attttaaatt
481 aagaagtgca ctaattcaga acaagcaact aagactgttg ccacaagaac atgtatatga
541 taaaataaat ggagtttgga atttatccag tgatcagggc aatttaggaa ccttttttat
601 taccaatgtg agaattgtgt ggcatgcaaa tatgaatgat agttttaatg tcagtatacc
661 atatctgcaa attcgttcaa taaagattag agattcaaaa tttggtttag ctcttgtcat
721 agaaagctct cagcagagtg gtggatatgt tcttggcttt aaaatagatc ctgtggaaaa
781 actgcaagaa tcagttaagg aaatcaattc acttcacaaa gtctattctg ccagtcccat
841 atttggagtt gattatgaga tggaagaaaa gccccagccg ctcgaagctc tgacagtcga
901 acaaattcaa gatgatgtag aaatagactc tgatggtcac acggatgctt ttgtggctta
961 ttttgctgat ggcaataagc aacaagatcg tgaacctgta ttttcagaag aactggggct
1021 tgcaatagag aaattgaagg atggattcac cctacaggga ctttgggaag taatgagttg
1081 attgaccttg agttgagatg gatttctatt aaagatatct ctagtttaaa aaaaaaaaaa
1141 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaagaa aaaaaaaaaa aaaa
//