LOCUS BC044568 2006 bp mRNA linear HUM 21-JUL-2005
DEFINITION Homo sapiens PC4 and SFRS1 interacting protein 1, mRNA (cDNA clone
MGC:57122 IMAGE:4838839), complete cds.
ACCESSION BC044568
VERSION BC044568.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2006)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2006)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (17-JAN-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 106 Row: g Column: 15
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 16945969.
FEATURES Location/Qualifiers
source 1..2006
/db_xref="H-InvDB:HIT000097859"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:57122 IMAGE:4838839"
/tissue_type="Testis"
/clone_lib="NIH_MGC_97"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..2006
/gene="PSIP1"
/gene_synonym="DFS70"
/gene_synonym="LEDGF"
/gene_synonym="p52"
/gene_synonym="p75"
/gene_synonym="PAIP"
/gene_synonym="PSIP2"
/db_xref="GeneID:11168"
/db_xref="MIM:603620"
CDS 316..1305
/gene="PSIP1"
/gene_synonym="DFS70"
/gene_synonym="LEDGF"
/gene_synonym="p52"
/gene_synonym="p75"
/gene_synonym="PAIP"
/gene_synonym="PSIP2"
/codon_start=1
/product="PSIP1 protein"
/protein_id="AAH44568.2"
/db_xref="GeneID:11168"
/db_xref="MIM:603620"
/translation="MTRDFKPGDLIFAKMKGYPHWPARVDEVPDGAVKPPTNKLPIFF
FGTHETAFLGPKDIFPYSENKEKYGKPNKRKGFNEGLWEIDNNPKVKFSSQQAATKQS
NASSDVEVEEKETSVSKEDTDHEEKASNEDVTKAVDITTPKAARRGRKRKAEKQVETE
EAGVVTTATASVNLKVSPKRGRPAATEVKIPKPRGRPKMVKQPCPSESDIITEEDKSK
KKGQEEKQPKKQPKKDEEGQKEEDKPRKEPDKKEGKKEVESKRKNLAKTGVTSTSDSE
EEGDDQEGEKKRKGGRNFQTAHRRNMLKGQHEKEAADRKRKQEEQMETEHFAL"
BASE COUNT 709 a 395 c 463 g 439 t
ORIGIN
1 gggccgagcg ggagccgcgc gggagcagcg cagctacggc ggcggcagcg gcggcgcggt
61 tgcgattccg agccgttgag acgcctctgc ggcagctggt ggcgcaggtg gcttgcgtgg
121 acgcgggtag aggcgaccgg ccagcaaccg cagcgtcggc gcccgcggcc ccggcaggcg
181 cgtcgggacg ccccgaggca tcctcccccg cccgcgggcc cggtagctgg gcccgcgtcc
241 gccgcccgca tccccgcgcc gccgcatctc ctcgccgcct cccgggcttc ggacccccgg
301 tctcgccccc gaaacatgac tcgcgatttc aaacctggag acctcatctt cgccaagatg
361 aaaggttatc cccattggcc agctcgagta gacgaagttc ctgatggagc tgtaaagcca
421 cccacaaaca aactacccat tttctttttt ggaactcatg agactgcttt tttaggacca
481 aaggatatat ttccttactc agaaaataag gaaaagtatg gcaaaccaaa taaaagaaaa
541 ggttttaatg aaggtttatg ggagatagat aacaatccaa aagtgaaatt ttcaagtcaa
601 caggcagcaa ctaaacaatc aaatgcatca tctgatgttg aagttgaaga aaaggaaact
661 agtgtttcaa aggaagatac cgaccatgaa gaaaaagcca gcaatgagga tgtgactaaa
721 gcagttgaca taactactcc aaaagctgcc agaaggggga gaaagagaaa ggcagaaaaa
781 caagtagaaa ctgaggaggc aggagtagtg acaacagcaa cagcatctgt taatctaaaa
841 gtgagtccta aaagaggacg acctgcagct acagaagtca agattccaaa accaagaggc
901 agacccaaaa tggtaaaaca gccctgtcct tcagagagtg acatcattac tgaagaggac
961 aaaagtaaga aaaaggggca agaggaaaaa caacctaaaa agcagcctaa gaaggatgaa
1021 gagggccaga aggaagaaga taagccaaga aaagagccgg ataaaaaaga ggggaagaaa
1081 gaagttgaat caaaaaggaa aaatttagct aaaacagggg ttacttcaac ctccgattct
1141 gaagaagaag gagatgatca agaaggtgaa aagaagagaa aaggtgggag gaactttcag
1201 actgctcaca gaaggaatat gctgaaaggc caacatgaga aagaagcagc agatcgaaaa
1261 cgcaagcaag aggaacaaat ggaaactgag cattttgctc tgtaaagcat ttcagatgca
1321 gcttgtgtga aatgcattat gcaaaataaa gtttattgta ttgtattccc agccaaacaa
1381 catgtaatct acagtaataa aaaatatatc tcattttggg ctcaaagcat taatccagtt
1441 actgaaaaga gaatacaagt ggagcaaaca agagatgaag atcttgatac agactcattg
1501 gactgaattt cccccttccc cccattgatg gaagaatgtt ccagattcta aattgaggac
1561 ttcattatta atggcattac tgtgttatga ttaacaaatt tcctgtaagg tacacactac
1621 atactaaggt cggccatcat tcctgttttt tttttttttt ttttttttaa ccaagcttaa
1681 aatgaagctt tgtgtttgaa agtaataaca agctcagacg aagatggtgg ttgtacatta
1741 ttcatctaga aaatataaaa attcattttg ttttgaagct agttattaaa ctggaatagc
1801 agttatatcc ctgagaatgg ggcccttctc ttgacattcc tttgttgttt aattctttag
1861 aatcttaata aatgtttttt taatcctgag agattaaaca gtagtagact tgttaagaat
1921 gaaactgtaa ccaaaatttt aaaataaagt tttttttaaa aaaaaaaaaa aaaaaaaaaa
1981 aaaaaaaaaa gaaaaaaaaa aaaaaa
//