LOCUS BC044254 4089 bp mRNA linear HUM 08-SEP-2006 DEFINITION Homo sapiens partner and localizer of BRCA2, mRNA (cDNA clone MGC:50910 IMAGE:6045564), complete cds. ACCESSION BC044254 VERSION BC044254.2 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 4089) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 4089) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (13-JAN-2003) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT On Aug 25, 2003 this sequence version replaced BC044254.1. Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: ATCC cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Genome Sequence Centre, BC Cancer Agency, Vancouver, BC, Canada info@bcgsc.bc.ca Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao, Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang, Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 89 Row: m Column: 7 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 27436909. FEATURES Location/Qualifiers source 1..4089 /db_xref="H-InvDB:HIT000052861" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:50910 IMAGE:6045564" /tissue_type="Testis, embryonal carcinoma" /clone_lib="NIH_MGC_92" /lab_host="DH10B" /note="Vector: pCMV-SPORT6" gene 1..4089 /gene="PALB2" /gene_synonym="DKFZp667I166" /gene_synonym="FLJ21816" /db_xref="GeneID:79728" /db_xref="MIM:610355" CDS 128..3688 /gene="PALB2" /gene_synonym="DKFZp667I166" /gene_synonym="FLJ21816" /codon_start=1 /product="partner and localizer of BRCA2" /protein_id="AAH44254.1" /db_xref="GeneID:79728" /db_xref="MIM:610355" /translation="MDEPPGKPLSCEEKEKLKEKLAFLKREYSKTLARLQRAQRAEKI KHSIKKTVEEQDCLSQQDLSPQLKHSEPKNKICVYDKLHIKTHLDEETGEKTSITLDV GPESFNPGDGPGGLPIQRTDDTQEHFPHRVSDPSGEQKQKLPSRRKKQQKRTFISQER DCVFGTDSLRLSGKRLKEQEEISSKNPARSPVTEIRTHLLSLKSELPDSPEPVTEINE DSVLIPPTAQPEKGVDTFLRRPNFTRATTVPLQTLSDSGSSQHLEHIPPKGSSELTTH DLKNIRFTSPVSLEAQGKKMTVSTDNLLVNKAISKSGQLPTSSNLEANISCSLNELTY NNLPANENQNLKEQNQTEKSLKSPSDTLDGRNENLQESEILSQPKSLSLEATSPLSAE KHSCTVPEGLLFPAEYYVRTTRSMSNCQRKVAVEAVIQSHLDVKKKGFKNKNKDASKN LNLSNEETDQSEIRMSGTCTGQPSSRTSQKLLSLTKVSSPAGPTEDNDLSRKAVAQAP GRRYTGKRKSACTPASDHCEPLLPTSSLSIVNRSKEEVTSHKYQHEKLFIQVKGKKSR HQKEDSLSWSNSAYLSLDDDAFTAPFHRDGMLSLKQLLSFLSITDFQLPDEDFGPLKL EKVKSCSEKPVEPFESKMFGERHLKEGSCIFPEELSPKRMDTEMEDLEEDLIVLPGKS HPKRPNSQSQHTKTGLSSSILLYTPLNTVAPDDNDRPTTDMCSPAFPILGTTPAFGPQ GSYEKASTEVAGRTCCTPQLAHLKDSVCLASDTKQFDSSGSPAKPHTTLQVSGRQGQP TCDCDSVPPGTPPPIESFTFKENQLCRNTCQELHKHSVEQTETAELPASDSINPGNLQ LVSELKNPSGSCSVDVSAMFWERAGCKEPCIITACEDVVSLWKALDAWQWEKLYTWHF AEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDESEKQVLLKSGNIKAVLGL TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTT IMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSP VFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVKDHCAAAILTSGTIAIWDLLLGQ CTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHYS" BASE COUNT 1356 a 852 c 843 g 1038 t ORIGIN 1 ctgagggtgc gatcccgggc tccccattcc ttcctggggc gcctccccgg cccagggcca 61 actgggtccc ggtgtcggca ggcctggggt cggcgacggc tgctcttttc gttctgtcgc 121 ctgcccgatg gacgagcctc ccgggaagcc cctcagctgt gaggagaagg aaaagttaaa 181 ggagaaatta gcattcttga aaagggaata cagcaagaca ctagcccgcc ttcagcgtgc 241 ccaaagagct gaaaagatta agcattctat taagaaaaca gtagaagaac aagattgttt 301 gtctcagcag gatctctcac cgcagctaaa acactcagaa cctaaaaata aaatatgtgt 361 ttatgacaag ttacacatca aaacccatct tgatgaagaa actggagaaa agacatctat 421 cacacttgat gttgggcctg agtcctttaa ccctggagat ggcccaggag gattacctat 481 acaaagaaca gatgacaccc aagaacattt tccccacagg gtcagtgacc ctagtggtga 541 gcaaaagcag aagctgccaa gcagaagaaa gaagcagcag aagaggacat ttatttcaca 601 ggagagagac tgtgtctttg gcactgattc actcagattg tctgggaaaa gactaaagga 661 acaggaagaa atcagtagca aaaatcctgc tagatcacca gtaactgaaa taagaactca 721 ccttttaagt cttaaatctg aacttccaga ttctccagaa ccagttacag aaattaatga 781 agacagtgta ttaattccac caactgccca accagaaaaa ggtgttgata cattcctaag 841 aagacctaat ttcaccaggg cgactacagt tcctttacag actctatcag atagcggtag 901 tagtcagcac cttgaacaca ttcctcctaa aggtagcagt gaacttacta ctcacgacct 961 aaaaaacatt agatttactt cacctgtaag tttggaggca caaggcaaaa aaatgactgt 1021 ctctacagat aacctccttg taaataaagc tataagtaaa agtggccaac tgcccacaag 1081 ttctaattta gaggcaaata tttcatgttc tctaaatgaa ctcacctaca ataacttacc 1141 agcaaatgaa aaccaaaact taaaagaaca aaatcaaaca gagaaatctt taaaatctcc 1201 cagtgacact cttgatggca ggaatgaaaa tcttcaggaa agtgagattc taagtcaacc 1261 taagagtctt agcctggaag caacctctcc tctttctgca gaaaaacatt cttgcacagt 1321 gcctgaaggc cttctgtttc ctgcagaata ttatgttaga acaacacgaa gcatgtccaa 1381 ttgccagagg aaagtagccg tggaggctgt cattcagagt catttggatg tcaagaaaaa 1441 agggtttaaa aataaaaata aggatgcaag taaaaattta aacctttcca atgaggaaac 1501 tgaccaaagt gaaattagga tgtctggcac atgcacagga caaccaagtt caagaacctc 1561 tcagaaactt ctctcattaa ctaaagtcag ctctcccgct gggcccactg aagataatga 1621 cttgtctagg aaggcagttg cccaagcacc tggtagaaga tacacaggaa aaagaaaatc 1681 agcctgcacc ccagcatcag atcattgtga accacttttg ccaacttcta gcctgtcgat 1741 tgttaacagg tccaaggaag aagtcacctc acacaaatat cagcacgaaa aattatttat 1801 tcaagtgaaa gggaagaaaa gtcgtcatca aaaagaggat tccctttctt ggagtaatag 1861 tgcttattta tccttggatg atgatgcttt cacggctcca tttcataggg atggaatgct 1921 gagtttaaag caactactgt cttttctcag tatcacagac tttcagttac ctgatgaaga 1981 ctttggacct cttaagcttg aaaaagtgaa gtcctgctca gaaaaaccag tggagccctt 2041 tgagtcaaaa atgtttggag agagacatct taaagaggga agctgtattt ttccagagga 2101 actgagtcct aaacgcatgg atacagaaat ggaggactta gaagaggacc ttattgttct 2161 accaggaaaa tcacatccca aaaggccaaa ctcgcaaagc cagcatacaa agacgggcct 2221 ttcttcatcc atattacttt atactccttt aaatacggtt gcgcctgatg ataatgacag 2281 gcctaccaca gacatgtgtt cacctgcttt ccccatctta ggtactactc cagcctttgg 2341 ccctcaaggc tcctatgaaa aagcatctac agaagttgct ggacgaactt gctgcacacc 2401 ccaacttgct catttgaaag actcagtctg tcttgccagt gatactaaac aattcgacag 2461 ttcaggcagc ccagcaaaac cacataccac cctgcaagtg tcaggcaggc aaggacaacc 2521 tacctgtgac tgtgactctg tcccgccagg aacacctcca cccattgagt cattcacttt 2581 taaagaaaat cagctctgta gaaacacatg ccaggagctg cataaacatt ccgtcgaaca 2641 gactgaaaca gcagagcttc ctgcttctga tagcataaac ccaggcaacc tacaattggt 2701 ttcagagtta aagaatcctt caggttcctg ttccgtagat gtgagtgcca tgttttggga 2761 aagagccggt tgtaaagagc catgtatcat aactgcttgc gaagatgtag tttctctttg 2821 gaaagctctg gatgcttggc agtgggaaaa actttatacc tggcacttcg cagaggttcc 2881 agtattacag atagttccag tgcctgatgt gtataatctc gtgtgtgtag ctttgggaaa 2941 tttggaaatc agagagatca gggcattgtt ttgttcctct gatgatgaaa gtgaaaagca 3001 agtactactg aagtctggaa atataaaagc tgtgcttggc ctgacaaaga ggaggctagt 3061 tagtagcagt gggacccttt ctgatcaaca agtagaagtc atgacgtttg cagaagatgg 3121 aggaggcaaa gaaaaccaat ttttgatgcc ccctgaggag actatactaa cttttgctga 3181 ggtccaaggg atgcaagaag ctctgcttgg tactactatt atgaacaaca ttgttatttg 3241 gaatttaaaa actggtcaac tcctgaaaaa gatgcacatt gatgattctt accaagcttc 3301 agtctgtcac aaagcctatt ctgaaatggg gcttctcttt attgtcctga gtcatccctg 3361 tgccaaagag agtgagtcgt tgcgaagccc tgtgtttcag ctcattgtga ttaaccctaa 3421 gacgactctc agcgtgggtg tgatgctgta ctgtcttcct ccagggcagg ctggcaggtt 3481 cctggaaggt gacgtgaaag atcactgtgc agcagcaatc ttgacttctg gaacaattgc 3541 catttgggac ttacttctcg gtcagtgtac tgccctcctc ccacctgtct ctgaccaaca 3601 ttggtctttt gtgaaatggt cgggtacaga ctctcatttg ctggctggac aaaaagatgg 3661 aaatatattt gtataccact attcataagt tagggtaaag tgaaaacaca attttctgga 3721 tatattgggc ctcttagtat tttttggagt tttaaatata aaggagaata tctgaatgac 3781 acttaaaatg attgcttgtt tatgtccaga cagacttatt ttttattcta atgatggtag 3841 caccactgat cttggatgta catttatgta tactttgaga aaaagggttt taggttgatt 3901 tttgtaattt cccacatttg tacatgtgct tttaaaggtg tacataaagc ttcaaatggc 3961 aataaatatt tatttttata aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa 4021 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa 4081 aaaaaaaaa //