LOCUS BC044254 4089 bp mRNA linear HUM 08-SEP-2006
DEFINITION Homo sapiens partner and localizer of BRCA2, mRNA (cDNA clone
MGC:50910 IMAGE:6045564), complete cds.
ACCESSION BC044254
VERSION BC044254.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4089)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 4089)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (13-JAN-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 25, 2003 this sequence version replaced BC044254.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 89 Row: m Column: 7
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 27436909.
FEATURES Location/Qualifiers
source 1..4089
/db_xref="H-InvDB:HIT000052861"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:50910 IMAGE:6045564"
/tissue_type="Testis, embryonal carcinoma"
/clone_lib="NIH_MGC_92"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..4089
/gene="PALB2"
/gene_synonym="DKFZp667I166"
/gene_synonym="FLJ21816"
/db_xref="GeneID:79728"
/db_xref="MIM:610355"
CDS 128..3688
/gene="PALB2"
/gene_synonym="DKFZp667I166"
/gene_synonym="FLJ21816"
/codon_start=1
/product="partner and localizer of BRCA2"
/protein_id="AAH44254.1"
/db_xref="GeneID:79728"
/db_xref="MIM:610355"
/translation="MDEPPGKPLSCEEKEKLKEKLAFLKREYSKTLARLQRAQRAEKI
KHSIKKTVEEQDCLSQQDLSPQLKHSEPKNKICVYDKLHIKTHLDEETGEKTSITLDV
GPESFNPGDGPGGLPIQRTDDTQEHFPHRVSDPSGEQKQKLPSRRKKQQKRTFISQER
DCVFGTDSLRLSGKRLKEQEEISSKNPARSPVTEIRTHLLSLKSELPDSPEPVTEINE
DSVLIPPTAQPEKGVDTFLRRPNFTRATTVPLQTLSDSGSSQHLEHIPPKGSSELTTH
DLKNIRFTSPVSLEAQGKKMTVSTDNLLVNKAISKSGQLPTSSNLEANISCSLNELTY
NNLPANENQNLKEQNQTEKSLKSPSDTLDGRNENLQESEILSQPKSLSLEATSPLSAE
KHSCTVPEGLLFPAEYYVRTTRSMSNCQRKVAVEAVIQSHLDVKKKGFKNKNKDASKN
LNLSNEETDQSEIRMSGTCTGQPSSRTSQKLLSLTKVSSPAGPTEDNDLSRKAVAQAP
GRRYTGKRKSACTPASDHCEPLLPTSSLSIVNRSKEEVTSHKYQHEKLFIQVKGKKSR
HQKEDSLSWSNSAYLSLDDDAFTAPFHRDGMLSLKQLLSFLSITDFQLPDEDFGPLKL
EKVKSCSEKPVEPFESKMFGERHLKEGSCIFPEELSPKRMDTEMEDLEEDLIVLPGKS
HPKRPNSQSQHTKTGLSSSILLYTPLNTVAPDDNDRPTTDMCSPAFPILGTTPAFGPQ
GSYEKASTEVAGRTCCTPQLAHLKDSVCLASDTKQFDSSGSPAKPHTTLQVSGRQGQP
TCDCDSVPPGTPPPIESFTFKENQLCRNTCQELHKHSVEQTETAELPASDSINPGNLQ
LVSELKNPSGSCSVDVSAMFWERAGCKEPCIITACEDVVSLWKALDAWQWEKLYTWHF
AEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDESEKQVLLKSGNIKAVLGL
TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTT
IMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSP
VFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVKDHCAAAILTSGTIAIWDLLLGQ
CTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHYS"
BASE COUNT 1356 a 852 c 843 g 1038 t
ORIGIN
1 ctgagggtgc gatcccgggc tccccattcc ttcctggggc gcctccccgg cccagggcca
61 actgggtccc ggtgtcggca ggcctggggt cggcgacggc tgctcttttc gttctgtcgc
121 ctgcccgatg gacgagcctc ccgggaagcc cctcagctgt gaggagaagg aaaagttaaa
181 ggagaaatta gcattcttga aaagggaata cagcaagaca ctagcccgcc ttcagcgtgc
241 ccaaagagct gaaaagatta agcattctat taagaaaaca gtagaagaac aagattgttt
301 gtctcagcag gatctctcac cgcagctaaa acactcagaa cctaaaaata aaatatgtgt
361 ttatgacaag ttacacatca aaacccatct tgatgaagaa actggagaaa agacatctat
421 cacacttgat gttgggcctg agtcctttaa ccctggagat ggcccaggag gattacctat
481 acaaagaaca gatgacaccc aagaacattt tccccacagg gtcagtgacc ctagtggtga
541 gcaaaagcag aagctgccaa gcagaagaaa gaagcagcag aagaggacat ttatttcaca
601 ggagagagac tgtgtctttg gcactgattc actcagattg tctgggaaaa gactaaagga
661 acaggaagaa atcagtagca aaaatcctgc tagatcacca gtaactgaaa taagaactca
721 ccttttaagt cttaaatctg aacttccaga ttctccagaa ccagttacag aaattaatga
781 agacagtgta ttaattccac caactgccca accagaaaaa ggtgttgata cattcctaag
841 aagacctaat ttcaccaggg cgactacagt tcctttacag actctatcag atagcggtag
901 tagtcagcac cttgaacaca ttcctcctaa aggtagcagt gaacttacta ctcacgacct
961 aaaaaacatt agatttactt cacctgtaag tttggaggca caaggcaaaa aaatgactgt
1021 ctctacagat aacctccttg taaataaagc tataagtaaa agtggccaac tgcccacaag
1081 ttctaattta gaggcaaata tttcatgttc tctaaatgaa ctcacctaca ataacttacc
1141 agcaaatgaa aaccaaaact taaaagaaca aaatcaaaca gagaaatctt taaaatctcc
1201 cagtgacact cttgatggca ggaatgaaaa tcttcaggaa agtgagattc taagtcaacc
1261 taagagtctt agcctggaag caacctctcc tctttctgca gaaaaacatt cttgcacagt
1321 gcctgaaggc cttctgtttc ctgcagaata ttatgttaga acaacacgaa gcatgtccaa
1381 ttgccagagg aaagtagccg tggaggctgt cattcagagt catttggatg tcaagaaaaa
1441 agggtttaaa aataaaaata aggatgcaag taaaaattta aacctttcca atgaggaaac
1501 tgaccaaagt gaaattagga tgtctggcac atgcacagga caaccaagtt caagaacctc
1561 tcagaaactt ctctcattaa ctaaagtcag ctctcccgct gggcccactg aagataatga
1621 cttgtctagg aaggcagttg cccaagcacc tggtagaaga tacacaggaa aaagaaaatc
1681 agcctgcacc ccagcatcag atcattgtga accacttttg ccaacttcta gcctgtcgat
1741 tgttaacagg tccaaggaag aagtcacctc acacaaatat cagcacgaaa aattatttat
1801 tcaagtgaaa gggaagaaaa gtcgtcatca aaaagaggat tccctttctt ggagtaatag
1861 tgcttattta tccttggatg atgatgcttt cacggctcca tttcataggg atggaatgct
1921 gagtttaaag caactactgt cttttctcag tatcacagac tttcagttac ctgatgaaga
1981 ctttggacct cttaagcttg aaaaagtgaa gtcctgctca gaaaaaccag tggagccctt
2041 tgagtcaaaa atgtttggag agagacatct taaagaggga agctgtattt ttccagagga
2101 actgagtcct aaacgcatgg atacagaaat ggaggactta gaagaggacc ttattgttct
2161 accaggaaaa tcacatccca aaaggccaaa ctcgcaaagc cagcatacaa agacgggcct
2221 ttcttcatcc atattacttt atactccttt aaatacggtt gcgcctgatg ataatgacag
2281 gcctaccaca gacatgtgtt cacctgcttt ccccatctta ggtactactc cagcctttgg
2341 ccctcaaggc tcctatgaaa aagcatctac agaagttgct ggacgaactt gctgcacacc
2401 ccaacttgct catttgaaag actcagtctg tcttgccagt gatactaaac aattcgacag
2461 ttcaggcagc ccagcaaaac cacataccac cctgcaagtg tcaggcaggc aaggacaacc
2521 tacctgtgac tgtgactctg tcccgccagg aacacctcca cccattgagt cattcacttt
2581 taaagaaaat cagctctgta gaaacacatg ccaggagctg cataaacatt ccgtcgaaca
2641 gactgaaaca gcagagcttc ctgcttctga tagcataaac ccaggcaacc tacaattggt
2701 ttcagagtta aagaatcctt caggttcctg ttccgtagat gtgagtgcca tgttttggga
2761 aagagccggt tgtaaagagc catgtatcat aactgcttgc gaagatgtag tttctctttg
2821 gaaagctctg gatgcttggc agtgggaaaa actttatacc tggcacttcg cagaggttcc
2881 agtattacag atagttccag tgcctgatgt gtataatctc gtgtgtgtag ctttgggaaa
2941 tttggaaatc agagagatca gggcattgtt ttgttcctct gatgatgaaa gtgaaaagca
3001 agtactactg aagtctggaa atataaaagc tgtgcttggc ctgacaaaga ggaggctagt
3061 tagtagcagt gggacccttt ctgatcaaca agtagaagtc atgacgtttg cagaagatgg
3121 aggaggcaaa gaaaaccaat ttttgatgcc ccctgaggag actatactaa cttttgctga
3181 ggtccaaggg atgcaagaag ctctgcttgg tactactatt atgaacaaca ttgttatttg
3241 gaatttaaaa actggtcaac tcctgaaaaa gatgcacatt gatgattctt accaagcttc
3301 agtctgtcac aaagcctatt ctgaaatggg gcttctcttt attgtcctga gtcatccctg
3361 tgccaaagag agtgagtcgt tgcgaagccc tgtgtttcag ctcattgtga ttaaccctaa
3421 gacgactctc agcgtgggtg tgatgctgta ctgtcttcct ccagggcagg ctggcaggtt
3481 cctggaaggt gacgtgaaag atcactgtgc agcagcaatc ttgacttctg gaacaattgc
3541 catttgggac ttacttctcg gtcagtgtac tgccctcctc ccacctgtct ctgaccaaca
3601 ttggtctttt gtgaaatggt cgggtacaga ctctcatttg ctggctggac aaaaagatgg
3661 aaatatattt gtataccact attcataagt tagggtaaag tgaaaacaca attttctgga
3721 tatattgggc ctcttagtat tttttggagt tttaaatata aaggagaata tctgaatgac
3781 acttaaaatg attgcttgtt tatgtccaga cagacttatt ttttattcta atgatggtag
3841 caccactgat cttggatgta catttatgta tactttgaga aaaagggttt taggttgatt
3901 tttgtaattt cccacatttg tacatgtgct tttaaaggtg tacataaagc ttcaaatggc
3961 aataaatatt tatttttata aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
4021 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
4081 aaaaaaaaa
//