LOCUS BC043410 2654 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens F-box protein 42, mRNA (cDNA clone MGC:50954
IMAGE:6155685), complete cds.
ACCESSION BC043410
VERSION BC043410.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2654)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2654)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (09-JAN-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 89 Row: p Column: 19
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 62955043.
FEATURES Location/Qualifiers
source 1..2654
/db_xref="H-InvDB:HIT000052812"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:50954 IMAGE:6155685"
/tissue_type="Uterus, leiomyosarcoma"
/clone_lib="NIH_MGC_71"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..2654
/gene="FBXO42"
/gene_synonym="Fbx42"
/gene_synonym="KIAA1332"
/db_xref="GeneID:54455"
/db_xref="HGNC:HGNC:29249"
/db_xref="MIM:609109"
CDS 220..2370
/gene="FBXO42"
/gene_synonym="Fbx42"
/gene_synonym="KIAA1332"
/codon_start=1
/product="F-box protein 42"
/protein_id="AAH43410.1"
/db_xref="GeneID:54455"
/db_xref="HGNC:HGNC:29249"
/db_xref="MIM:609109"
/translation="MASSSDSEDDSFMAVDQEETVLEGTMDQDEEPHPVLEAEETRHN
RSMSELPEEVLEYILSFLSPYQEHKTAALVCKQWYRLIKGVAHQCYHGFMKAVQEGNI
QWESRTYPYPGTPITQRFSHSACYYDANQSMYVFGGCTQSSCNAAFNDLWRLDLNSKE
WIRPLASGSYPSPKAGATLVVYKDLLVLFGGWTRPSPYPLHQPERFFDEIHTYSPSKN
WWNCIVTTHGPPPMAGHSSCVIDDKMIVFGGSLGSRQMSNDVWVLDLEQWAWSKPNIS
GPSPHPRGGQSQIVIDDATILILGGCGGPNALFKDAWLLHMHSGPWAWQPLKVENEEH
GAPELWCHPACRVGQCVVVFSQAPSGRAPLSPSLNSRPSPISATPPALVPETREYRSQ
SPVRSMDEAPCVNGRWGTLRPRAQRQTPSGSREGSLSPARGDGSPILNGGSLSPGTAA
VGGSLDSPVQAISPSTPSAPEGYDLKIGLSLAPRRGSLPDQKDLRLGSIDLNWDLKPA
SSSNPMDGMDNRTVGGSMRHPPEQTNGVHTPPHVASALAGAVSPGALRRSLEAIKAMS
SKGPSASAALSPPLGSSPGSPGSQSLSSGETVPIPRPGPAQGDGHSLPPIARRLGHHP
PQSLNVGKPLYQSMNCKPMQMYVLDIKDTKEKGRVKWKVFNSSSVVGPPETSLHTVVQ
GRGELIIFGGLMDKKQNVKYYPKTNALYFVRAKR"
BASE COUNT 658 a 689 c 688 g 619 t
ORIGIN
1 gcagcagcag ctgcggcggc ggcggcgttt gagtggagga agatggcggc tccgggcggc
61 tcggggtccc gccagctgtg aggagccccg agcacggctg tcgcggcctg aggcagagcg
121 cctctgctct ggccctgtcc ctggctccct cattaccgtc gccagcggag cgaacccgag
181 agcgtggagc gggctgggcc agctgttgag tggaatgtca tggccagctc ctcagacagt
241 gaagatgaca gtttcatggc tgtggaccag gaagaaactg tgctggaagg gacaatggat
301 caagatgagg agccccaccc agtattggag gctgaggaga ctagacataa taggtccatg
361 tcggagctgc cagaagaggt tttggagtat atcctgtcct ttctctcacc gtatcaggaa
421 cacaaaactg cggcccttgt ctgcaaacag tggtatcgac ttatcaaagg tgtagcccat
481 cagtgttatc atggtttcat gaaggctgtc caggaaggaa acattcagtg ggagagccgt
541 acctatcctt atcctggaac cccaatcact cagcgcttct cgcacagtgc atgctattat
601 gatgctaatc agtctatgta tgtgtttgga ggctgtaccc agagcagctg caatgctgct
661 ttcaatgacc tctggagact tgacctaaac agcaaagagt ggatccgacc tttggcttca
721 gggtcctatc cttcccccaa agctggagca actctggtcg tgtacaagga cttgctagtg
781 ctgtttggtg gctggacgcg gccaagccct tatcccctac accagccaga gagattcttt
841 gatgaaatac acacttactc accctctaaa aattggtgga actgcattgt gacaacccat
901 gggccacctc ccatggctgg ccactcctcc tgtgtgatag atgataaaat gattgtcttt
961 ggtggctctt taggatcccg gcaaatgagc aatgatgtct gggtccttga ccttgagcag
1021 tgggcgtggt ccaagccgaa catctctggc cccagtcctc atcctcgagg tggccaatct
1081 cagattgtca tagatgatgc aactatctta atcctcggag ggtgtggcgg tcccaatgct
1141 ctattcaagg atgcttggtt gttgcacatg cattctggtc cttgggcctg gcagccactc
1201 aaggtagaaa atgaagagca tggggcccca gaactgtggt gccatccagc ttgccgggtg
1261 ggacagtgtg tggtggtctt cagccaggct cctagtggga gagccccact cagccccagt
1321 ttgaactctc gcccatcacc tatcagtgcc actcctccag ctctcgttcc tgaaacccga
1381 gagtaccgct ctcagtctcc agtaagaagc atggatgaag ctccttgtgt taacggccgc
1441 tggggaacac tgagacccag ggctcaaagg cagactcctt caggttcccg ggaagggagc
1501 ctttccccag ccagaggaga cggctctcct atcctcaatg gtgggagttt gtctccagga
1561 acggcagctg tgggtggctc tttggacagt cctgtacagg ccatatctcc aagtactcca
1621 tctgctcctg aaggatacga cctgaaaata ggactttctt tggccccccg acgaggatca
1681 ctaccagatc agaaagatct gagattagga tccatagatc tgaattggga tctgaaaccc
1741 gcttccagta gtaatcccat ggatggcatg gacaatagga cagttggggg aagtatgaga
1801 caccctcctg aacagacaaa tggtgtgcat accccacctc acgtggccag tgcccttgca
1861 ggggccgtct ccccaggtgc cctgcgtcgg agtctggaag ccatcaaagc gatgtcctcc
1921 aaaggcccct cggcctctgc agcactaagt cctcctcttg ggtcttctcc aggctctcct
1981 gggagccaga gtttgagcag tggagaaaca gtgcccatcc ctcgcccagg gcctgcccaa
2041 ggagatggac attccttacc tcccattgct cgccgcctgg gccaccaccc tccacagtcc
2101 ctaaatgttg gcaaacccct ataccagagt atgaactgca agcccatgca gatgtacgtg
2161 ctggacatta aagacaccaa ggagaagggg cgggtcaaat ggaaagtatt taatagcagt
2221 tctgtggttg gacctcctga aaccagcctg cataccgtgg tacaaggcag gggtgaactc
2281 atcatatttg gaggactcat ggacaagaaa cagaatgtga agtactatcc aaaaacaaac
2341 gccttgtact ttgtacgagc aaagagataa tgtgttctaa acccctttcc ttttctgtgg
2401 cttttaattt ggaattttcc agtgtgtaag catttggact gagaattggg aaaacaaaat
2461 tactcccaga agccaaaact ctttaattcc caaccgaagt cactccaggc tgggatcaaa
2521 tctccattaa gaaaaaaaat tatatataaa tatatatata tatattatat agccaactct
2581 gttgacaaaa aaagggagag atttccatcc tggttcagat aaagttgttg ctgtgtttta
2641 aaaaaaaaaa aaaa
//