LOCUS BC043341 3077 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens SWI/SNF related, matrix associated, actin dependent
regulator of chromatin, subfamily a-like 1, mRNA (cDNA clone
MGC:49824 IMAGE:6058575), complete cds.
ACCESSION BC043341
VERSION BC043341.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3077)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3077)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (09-JAN-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP/Gazdar
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 89 Row: n Column: 13
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 21071059.
FEATURES Location/Qualifiers
source 1..3077
/db_xref="H-InvDB:HIT000052793"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:49824 IMAGE:6058575"
/tissue_type="Lung, large cell carcinoma"
/clone_lib="NIH_MGC_68"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..3077
/gene="SMARCAL1"
/gene_synonym="HARP"
/gene_synonym="HHARP"
/db_xref="GeneID:50485"
/db_xref="HGNC:HGNC:11102"
/db_xref="MIM:606622"
CDS 118..2982
/gene="SMARCAL1"
/gene_synonym="HARP"
/gene_synonym="HHARP"
/codon_start=1
/product="SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a-like 1"
/protein_id="AAH43341.1"
/db_xref="GeneID:50485"
/db_xref="HGNC:HGNC:11102"
/db_xref="MIM:606622"
/translation="MSLPLTEEQRKKIEENRQKALARRAEKLLAEQHQRTSSGTSIAG
NPFQAKQGPSQNFPRESCKPVSHGVIFKQQNLSSSSNADQRPHDSHSFQAKGIWKKPE
EMPTACPGHSPRSQMALTGISPPLAQSPPEVPKQQLLSYELGQGHAQASPEIRFTPFA
NPTHKPLAKPKSSQETPAHSSGQPPRDAKLEAKTAKASPSGQNISYIHSSSESVTPRT
EGRLQQKSGSSVQKGVNSQKGKCVRNGDRFQVLIGYNAELIAVFKTLPSKNYDPDTKT
WNFSMNDYSALMKAAQSLPTVNLQPLEWAYGSSESPSTSSEGQAGLPSAPSLSFVKGR
CMLISRAYFEADISYSQDLIALFKQMDSRRYDVKTRKWSFLLEEHSKLIAKVRCLPQV
QLDPLPTTLTLAFASQLKKTSLSLTPDVPEADLSEVDPKLVSNLMPFQRAGVNFAIAK
GGRLLLADDMGLGKTIQAICIAAFYRKEWPLLVVVPSSVRFTWEQAFLRWLPSLSPDC
INVVVTGKDRLTAGLINIVSFDLLSKLEKQLKTPFKVVIIDESHFLKNSRTARCRAAM
PVLKVAKRVILLSGTPAMSRPAELYTQIIAVKPTFFPQFHAFGLRYCDAKRMPWGWDY
SGSSNLGELKLLLEEAVMLRRLKSDVLSQLPAKQRKIVVIAPGRINARTRAALDAAAK
EMTTKDKTKQQQKDALILFFNRTAEAKIPSVIEYILDLLESGREKFLVFAHHKVVLDA
ITQELERKHVQHIRIDGSTSSAEREDLCQQFQLSERHAVAVLSITAANMGLTFSSADL
VVFAELFWNPGVLIQAEDRVHRIGQTSSVGIHYLVAKGTADDYLWPLIQEKIKVLAEA
GLSETNFSEMTESTDYLYKDPKQQKIYDLFQKSFEKEGSDMELLEAAESFDPGSASGT
SGSSSQNMGDTLDESSLTASPQKKRRFEFFDNWDSFTSPL"
BASE COUNT 855 a 814 c 745 g 663 t
ORIGIN
1 cgcccgctta ccttgaggct gggttggaaa aagactatgt tagcaagtgt cacgccatgc
61 ttttgccaac tttccaatta aaggttgaca ttcctgcata agcatttctc tgtgaaaatg
121 tccttgcctc ttacagagga gcagaggaaa aagattgaag agaatcgaca aaaggctctg
181 gcccgcagag ctgagaagtt attggcagaa cagcatcaga ggactagctc gggcacctcc
241 attgctggca acccattcca ggccaagcaa ggcccatccc aaaatttccc aagggagtct
301 tgtaagccag tgagccatgg tgtcattttc aagcaacaga atctcagtag ctcatctaat
361 gctgaccaaa gacctcatga ttcccacagt tttcaggcaa agggaatatg gaaaaagcca
421 gaagaaatgc ccacagcctg cccaggccac agtccacgta gtcaaatggc tctcactgga
481 atctctcctc ccttggcaca aagtcctcca gaggtcccta aacaacagct cttgagttat
541 gagttaggtc aaggtcatgc tcaggcttca cctgagatca ggttcacacc ctttgctaac
601 ccaactcata agcctctggc caaaccaaag agttcccaag agacaccagc tcattcctct
661 ggacagcctc ccagggatgc taagttagag gccaagacag caaaagcctc cccttcgggg
721 cagaacattt cttacatcca ttctagctca gagagtgtaa cgcccaggac agaaggaaga
781 ctccagcaga agtcagggtc ctcagtccaa aaaggagtga actctcagaa gggaaagtgc
841 gtaaggaacg gcgatcgttt ccaggtgttg attgggtaca atgcggaact cattgcagtg
901 tttaagaccc tgcccagcaa gaattatgat cctgacacca agacgtggaa cttcagcatg
961 aatgactata gtgccctgat gaaagcagcc cagagcctcc ccacggtcaa cctgcagcct
1021 ctggaatggg cctatggcag cagcgagtca ccctccacca gcagtgaggg acaggccggc
1081 cttccatcag ctccatccct ttcatttgtc aaagggcgat gcatgctcat ctccagggcc
1141 tacttcgagg cagacatcag ttattcacag gaccttattg cgctttttaa acagatggat
1201 tccagaagat atgatgtcaa gaccaggaag tggagctttc tcttggaaga gcacagtaaa
1261 ctaattgcaa aggtgcgctg cctcccacaa gttcagctgg accctctgcc cacgactctc
1321 accctggcgt ttgcttctca gctcaagaag acatctctca gtctcacgcc agatgtccca
1381 gaggcagacc tttctgaagt ggaccccaag ctcgtgtcta atctgatgcc ctttcagaga
1441 gctggagtca attttgccat agccaaagga ggccgcctgc tgctcgctga cgacatgggc
1501 ctggggaaga ccatccaagc catctgcatc gcagcctttt accggaagga gtggccgctc
1561 ctggtggtgg tgccatcctc cgtgcgcttc acctgggagc aggccttcct tcggtggctg
1621 ccatctctga gcccagattg catcaacgtc gtggtgactg ggaaggaccg cctgacagct
1681 ggcctgatca acattgtcag ctttgacctt cttagcaagt tggaaaaaca gctaaaaacc
1741 ccttttaaag ttgtcatcat tgatgaatct cacttcctca aaaacagtag gactgcccgc
1801 tgtcgagcag ctatgccggt cctaaaggtt gccaagaggg tgatcctgtt gtcgggcaca
1861 ccagccatgt cccggcccgc agagctctac acgcagatca tcgcagtcaa gccaactttc
1921 ttcccccagt ttcatgcctt tggacttcgc tactgtgatg ccaaacggat gccttggggg
1981 tgggactact caggttcctc caacctggga gagctgaagc tcctgctgga ggaagcagtc
2041 atgctgcggc gcctcaagtc cgacgtcctt tcccagctgc ctgccaagca gcgcaagata
2101 gtggtgattg ccccaggacg gatcaatgcc aggaccagag ctgccctgga tgctgcagcc
2161 aaggaaatga ccaccaagga caaaactaaa cagcagcaga aagatgccct cattctcttc
2221 ttcaacagaa cagctgaagc taaaatccca tctgtcattg aatatatctt ggacctactg
2281 gaaagtggaa gagagaagtt tttagtattt gcacaccata aggtggtcct ggacgcaatt
2341 acgcaagagc ttgagagaaa gcacgtgcag cacatccgca tcgatggctc cacctcatca
2401 gctgagcggg aggacctgtg ccagcagttc caactgtcgg agaggcatgc tgtggccgtg
2461 ctgtccatca ccgctgccaa tatgggcctc accttctcct cggctgacct ggtggtgttt
2521 gctgagctgt tttggaaccc aggggtgctg atccaggctg aggaccgcgt gcaccgcatt
2581 ggacagacca gctccgtggg cattcactac ctcgtggcaa agggcacagc tgatgactac
2641 ctttggcccc tgattcaaga gaagattaaa gttctggcag aagccgggct ttctgagacc
2701 aatttttcag aaatgacaga atccactgat tacctctaca aggacccaaa gcagcagaag
2761 atctacgacc tattccagaa gtcctttgag aaagaaggaa gtgatatgga gctcctggaa
2821 gcagcagagt cctttgaccc aggaagtgct tcaggaacat ctggaagtag ttcccagaac
2881 atgggagaca ccctggatga aagctcattg acagccagtc cacagaagaa aaggagattt
2941 gaattttttg ataactggga cagctttacg tctcccctgt aaaaggggca aaaagaaaaa
3001 aataaaaagc attttaaaat catggaattg aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
3061 aaaaaaaaaa aaaaaaa
//