LOCUS BC043277 3045 bp mRNA linear HUM 28-JUL-2005 DEFINITION Homo sapiens synaptojanin 2, mRNA (cDNA clone MGC:44422 IMAGE:5297160), complete cds. ACCESSION BC043277 VERSION BC043277.2 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 3045) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 3045) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (09-JAN-2003) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT On Aug 25, 2003 this sequence version replaced BC043277.1. Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Miklos Palkovits, M.D., Ph.D. cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki Toshiyuki and Piero Carninci (RIKEN) cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Genome Sequence Centre, BC Cancer Agency, Vancouver, BC, Canada info@bcgsc.bc.ca Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao, Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang, Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 76 Row: n Column: 6. FEATURES Location/Qualifiers source 1..3045 /db_xref="H-InvDB:HIT000052790" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:44422 IMAGE:5297160" /tissue_type="Testis" /clone_lib="NIH_MGC_97" /lab_host="DH10B" /note="Vector: pBluescriptR" gene 1..3045 /gene="SYNJ2" /gene_synonym="INPP5H" /gene_synonym="KIAA0348" /db_xref="GeneID:8871" /db_xref="MIM:609410" CDS 411..2930 /gene="SYNJ2" /gene_synonym="INPP5H" /gene_synonym="KIAA0348" /codon_start=1 /product="SYNJ2 protein" /protein_id="AAH43277.1" /db_xref="GeneID:8871" /db_xref="MIM:609410" /translation="MGGKAGNKGAVGIRFQFHSTSFCFICSHLTAGQSQVKERNEDYK EITQKLCFPMGRNVFSHDYVFWCGDFNYRIDLTYEEVFYFVKRQDWKKLLEFDQLQLQ KSSGKIFKDFHEGAINFGPTYKYDVGSAAYDTSDKCRTPAWTDRVLWWRKKHPFDKTA GELNLLDSDLDVDTKVRHTWSPGALQYYGRAELQASDHRPVLAIVEVEVQEVDVGARE RVFQEVSSFQGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQG QMLVTFADSHSALSVLDVDGMKVKGRAVKIRPKTKDWLKGLREEIIRKRDSMAPVSPT ANSCLLEENFDFTSLDYESEGDILEDDEDYLVDEFNQPGVSDSELGGDDLSDVPGPTA LAPPSKSPALTKKKQHPTYKDDADLVELKRELEAVGEFRHRSPSRSLSVPNRPRPPQP PQRPPPPTGLMVKKSASDASISSGTHGQYSILQTARLLPGAPQQPPKARTGISKPYNV KQIKTTNAQEAEAAIRCLLEARGGASEEALSAVAPRDLEASSEPEPTPGAAKPETPQA PPLLPRRPPPRVPAIKKPTLRRTGKPLSPEEQFEQQTVHFTIGPPETSVEAPPVVTAP RVPPVPKPRTFQPGKAAERPSHRKPASDEAPPGAGASVPPPLEAPPLVPKVPPRRKKS APAAFHLQVLQSNSQLLQGLTYNSSDSPSGHPPAAGTVFPQGDFLSTSSATSPDSDGT KAMKPEAAPLLGDYQDPFWNLLHHPKLLNNTWLSKSSDPLDSGTRSPKRDPIDPVSAG ASAAKAELPPDHGHKTLGHWVTISDQEKRTALQVFDPLAKT" BASE COUNT 772 a 870 c 789 g 614 t ORIGIN 1 atcagaaagg gggcgagctt aggggcggca ttcctcttgg ggtgtgggtg tgggtgtttg 61 gatgctggag gaactcatct tttccccagc ttgtggttgg cctcatctta ccacctgggc 121 ctacccatgg cttttgaatt tccaccagcc tttcggcgag ctggcagcag gcgttgaact 181 gacctcccca ctgagcccct gggtcccggg aagggcctgt gcctgccaag agcaccacgg 241 gtacacccct gcagcacctg gagactaaga ctatgctgcc cataatcctc ttctctgact 301 ttcagaagat gtttaggtcc ctgtccctct gcttgtgtta tttgggcagc ttggcagtgt 361 cctaggttag caggtgaagg gacgtagcca tcgacacagt gaagacgggc atggggggca 421 aggcggggaa caagggcgcc gtcggcatcc gcttccagtt ccacagcacc agcttctgct 481 tcatatgtag tcacctgacg gccgggcagt cccaggtgaa ggagcggaat gaagactaca 541 aggagatcac ccagaaactc tgcttcccaa tggggagaaa tgttttttct catgattatg 601 tattttggtg tggcgatttc aactaccgca ttgatcttac ttatgaagaa gtcttctatt 661 ttgttaaacg ccaagactgg aagaaacttc tggaatttga tcaactacag ctacagaaat 721 caagtggaaa aatttttaag gactttcacg aaggagccat taactttgga cccacctaca 781 agtatgacgt cggctcagcc gcctacgata caagcgacaa atgccgcacc cccgcctgga 841 cagacagggt gctgtggtgg aggaagaaac atccctttga taaaacagct ggagaactca 901 accttctaga cagtgatcta gatgttgaca ccaaagtcag acacacctgg tctcctggtg 961 ccctgcagta ttatggtcgt gcggagctac aagcttctga tcacagacct gtgctggcga 1021 tcgtggaggt ggaagttcag gaagtcgatg tgggtgctcg ggagagggtt ttccaggaag 1081 tgtcctcctt ccagggcccc ctggatgcca ctgttgtagt aaaccttcaa tcaccgacct 1141 tagaagagaa aaacgagttt ccagaggacc tgcgtactga gctcatgcag accttgggga 1201 gttatgggac aattgttctt gtcaggatca accaagggca gatgctggta acttttgcag 1261 acagtcactc ggctctcagt gtcctggacg tggacggtat gaaggtgaaa ggcagagcag 1321 tgaagattag accgaagacc aaggactggc tgaaaggttt gcgagaggag atcattcgga 1381 aacgagacag catggccccc gtgtctccca ctgccaactc ctgtttgctg gaggaaaact 1441 ttgacttcac aagtttggac tatgagtcag aaggggatat tcttgaagac gatgaagact 1501 acttggtgga tgaattcaat cagcctgggg tctcggacag tgaactcggg ggagacgacc 1561 tctctgatgt ccccggcccc acagcactgg ctcctcccag caagtcacct gctctcacca 1621 aaaagaagca gcatccaacg tacaaagatg acgcggacct ggtggagctc aagcgggagc 1681 tggaagccgt cggggagttc cgccaccgtt ctccgagcag gtctctgtcg gtccccaacc 1741 gacctcggcc acctcaaccc ccgcagagac ccccccctcc aaccggttta atggtgaaaa 1801 agtcggcttc agatgcgtcc atctcctccg gcacccatgg gcagtattca attttgcaga 1861 cggcaagact tctaccagga gcacctcagc aacctcccaa ggctcggact ggaataagta 1921 aaccttataa tgtcaagcag atcaaaacca ccaatgccca ggaggcagaa gcagcaatcc 1981 ggtgtctcct ggaagccaga ggaggtgcct ccgaagaagc cctaagtgcc gtggccccaa 2041 gggaccttga agcatcctct gaaccagagc ccacaccggg ggcagccaaa ccagagaccc 2101 cacaggcgcc cccactcctt ccccgtcggc ccccacccag agttcctgcc atcaagaagc 2161 caaccttgag aaggacagga aagcccctgt caccggaaga acagtttgag caacagactg 2221 tccattttac aatcgggccc ccggagacaa gcgttgaggc ccctcctgtc gtgacagccc 2281 ctcgagtccc tcctgttccc aaaccaagaa catttcagcc tgggaaagct gcagagaggc 2341 caagccacag gaagccagca tcagacgaag cccctcctgg ggcaggagcc tctgtgccac 2401 cacctctgga ggcgccgcct cttgtgccca aggtaccccc gaggaggaag aagtcagccc 2461 ccgcagcctt ccacctgcag gtcctgcaga gcaacagcca gcttctccag ggcctcactt 2521 acaatagcag tgacagcccc tctgggcacc cacctgccgc gggcaccgtc ttcccacaag 2581 gggactttct cagcacttca tctgctacaa gccccgacag cgatggcacc aaagcgatga 2641 agccagaggc agccccactt cttggtgatt atcaggaccc cttctggaac cttcttcacc 2701 accctaaact gttgaataac acttggcttt ctaagagctc agaccctttg gactcaggaa 2761 ccaggagccc caaaagagat cccatagacc cagtgtcagc tggcgcttca gctgccaagg 2821 cagagctgcc accagatcat ggacacaaaa ccttaggtca ctgggtgaca atcagtgacc 2881 aagaaaagag gacagcactg caggtgtttg acccactggc aaaaacatga ctgagcagct 2941 ttgaaggctg cagtcctata gaatgcatac cttcctccct ctaggcatcc ctccaccaga 3001 agagacatct atttaaaggc acactggcca aaaaaaaaaa aaaaa //