LOCUS BC042914 3540 bp mRNA linear HUM 15-JUL-2006 DEFINITION Homo sapiens sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F, mRNA (cDNA clone MGC:52231 IMAGE:5477898), complete cds. ACCESSION BC042914 VERSION BC042914.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 3540) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 3540) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (06-JAN-2003) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: ATCC cDNA Library Preparation: Rubin Laboratory cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: National Institutes of Health Intramural Sequencing Center (NISC), Gaithersburg, Maryland; Web site: http://www.nisc.nih.gov/ Contact: nisc_mgc@nhgri.nih.gov Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B., Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S., Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P., Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R., Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C., McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W., Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L., Young,A., Zhang,L.-H. and Green,E.D. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAL Plate: 44 Row: l Column: 22 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 31377801. FEATURES Location/Qualifiers source 1..3540 /db_xref="H-InvDB:HIT000052757" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:52231 IMAGE:5477898" /tissue_type="Brain, astrocytoma, grade IV" /clone_lib="NIH_MGC_98" /lab_host="DH10B" /note="Vector: pOTB7" gene 1..3540 /gene="SEMA3F" /gene_synonym="sema IV" /gene_synonym="SEMA-IV" /gene_synonym="SEMA4" /gene_synonym="SEMAK" /db_xref="GeneID:6405" /db_xref="HGNC:HGNC:10728" /db_xref="MIM:601124" CDS 199..2556 /gene="SEMA3F" /gene_synonym="sema IV" /gene_synonym="SEMA-IV" /gene_synonym="SEMA4" /gene_synonym="SEMAK" /codon_start=1 /product="sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F" /protein_id="AAH42914.1" /db_xref="GeneID:6405" /db_xref="HGNC:HGNC:10728" /db_xref="MIM:601124" /translation="MLVAGLLLWASLLTGAWPSFPTQDHLPATPRVRLSFKELKATGT AHFFNFLLNTTDYRILLKDEDHDRMYVGSKDYVLSLDLHDINREPLIIHWAASPQRIE ECVLSGKDVNGECGNFVRLIQPWNRTHLYVCGTGAYNPMCTYVNRGRRAQATPWTQTQ AVRGRGSRATDGALRPMPTAPRQDYIFYLEPERLESGKGKCPYDPKLDTASALINEEL YAGVYIDFMGTDAAIFRTLGKQTAMRTDQYNSRWLNDPSFIHAELIPDSAERNDDKLY FFFRERSAEAPQSPAVYARIGRICLNDDGGHCCLVNKWSTFLKARLVCSVPGEDGIET HFDELQDVFVQQTQDVRNPVIYAVFTSSGSVFRGSAVCVYSMADIRMVFNGPFAHKEG PNYQWMPFSGKMPYPRPGTCPGGTFTPSMKSTKDYPDEVINFMRSHPLMYQAVYPLQR RPLVVRTGAPYRLTTIAVDQVDAADGRYEVLFLGTDRGTVQKVIVLPKDDQEMEELML EEVEVFKDPAPVKTMTISSKRQQLYVASAVGVTHLSLHRCQAYGAACADCCLARDPYC AWDGQACSRYTASSKRRSRRQDVRHGNPIRQCRGFNSNANKNAVESVQYGVAGSAAFL ECQPRSPQATVKWLFQRDPGDRRREIRAEDRFLRTEQGLLLRALQLSDRGLYSCTATE NNFKHVVTRVQLHVLGRDAVHAALFPPLSMSAPPPPGAGPPTPPYQELAQLLAQPEVG LIHQYCQGYWRHVPPSPREAPGAPRSPEPQDQKKPRNRRHHPPDT" BASE COUNT 716 a 1138 c 1019 g 667 t ORIGIN 1 ccgcggcgcc gatcccggct gaggcgcagc ggcgagaggt cgcgggcagg gccatggccc 61 cggggggccg ctagcgcgga ccggcccaac gggagccgct ccgtgccgcc gccgccgccc 121 gggcgcccag gccccgccgc tgcggaagag gtttctagag agtggagcct gcttcctggg 181 ccctaggccc ctcccacaat gcttgtcgcc ggtcttcttc tctgggcttc cctactgacc 241 ggggcctggc catccttccc cacccaggac cacctcccgg ccacgccccg ggtccggctc 301 tcattcaaag agctgaaggc cacaggcacc gcccacttct tcaacttcct gctcaacaca 361 accgactacc gaatcttgct caaggacgag gaccacgacc gcatgtacgt gggcagcaag 421 gactacgtgc tgtccctgga cctgcacgac atcaaccgcg agcccctcat tatacactgg 481 gcagcctccc cacagcgcat cgaggaatgc gtgctctcag gcaaggatgt caacggcgag 541 tgtgggaact tcgtcaggct catccagccc tggaaccgaa cacacctgta tgtgtgcggg 601 acaggtgcct acaaccccat gtgcacctat gtgaaccgcg gacgccgcgc ccaggccaca 661 ccatggaccc agactcaggc ggtcagaggc cgcggcagca gagccacgga tggtgccctc 721 cgcccgatgc ccacagcccc acgccaggat tacatcttct acctggagcc tgagcgactc 781 gagtcaggga agggcaagtg tccgtacgat cccaagctgg acacagcatc ggccctcatc 841 aatgaggagc tctatgctgg tgtgtacatc gattttatgg gcactgatgc agccatcttc 901 cgcacacttg gaaagcagac agccatgcgc acggatcagt acaactcccg gtggctgaac 961 gacccgtcgt tcatccatgc tgagctcatt cctgacagtg cggagcgcaa tgatgataag 1021 ctttacttct tcttccgtga gcggtcggca gaggcgccgc agagccccgc ggtgtacgcc 1081 cgcatcgggc gcatttgcct gaacgatgac ggtggtcact gttgcctggt caacaagtgg 1141 agcacattcc tgaaggcgcg gctcgtctgc tctgtcccgg gcgaggatgg cattgagact 1201 cactttgatg agctccagga cgtgtttgtc cagcagaccc aggacgtgag gaaccctgtc 1261 atttacgctg tctttacctc ctctggctcc gtgttccgag gctctgccgt gtgtgtctac 1321 tccatggctg atattcgcat ggtcttcaac gggccctttg cccacaaaga ggggcccaac 1381 taccagtgga tgcccttctc agggaagatg ccctacccac ggccgggcac gtgccctggt 1441 ggaaccttca cgccatctat gaagtccacc aaggattatc ctgatgaggt gatcaacttc 1501 atgcgcagcc acccactcat gtaccaggcc gtgtaccctc tgcagcggcg gcccctggta 1561 gtccgcacag gtgctcccta ccgccttacc actattgccg tggaccaggt ggatgcagcc 1621 gacgggcgct atgaggtgct tttcctgggc acagaccgcg ggacagtgca gaaggtcatt 1681 gtgctgccca aggatgacca ggagatggag gagctcatgc tggaggaggt ggaggtcttc 1741 aaggatccag cacccgtcaa gaccatgacc atctcttcta agaggcaaca actctacgtg 1801 gcgtcagccg tgggtgtcac acacctgagc ctgcaccgct gccaggcgta tggggctgcc 1861 tgtgctgact gctgccttgc ccgggaccct tactgtgcct gggatggcca ggcctgctcc 1921 cgctatacag catcctccaa gaggcggagc cgccggcagg acgtccggca cggaaacccc 1981 atcaggcagt gccgtgggtt caactccaat gccaacaaga atgccgtgga gtctgtgcag 2041 tatggcgtgg ccggcagcgc agccttcctt gagtgccagc cccgctcgcc ccaagccact 2101 gttaagtggc tgttccagcg agatcctggt gaccggcgcc gagagattcg tgcagaggac 2161 cgcttcctgc gcacagagca gggcttgttg ctccgtgcac tgcagctcag cgatcgtggc 2221 ctctactcct gcacagccac tgagaacaac tttaagcacg tcgtcacacg agtgcagctg 2281 catgtactgg gccgggacgc cgtccatgct gccctcttcc caccactgtc catgagcgcc 2341 ccgccacccc caggcgcagg ccccccaacg cctccttacc aggagttagc ccagctgctg 2401 gcccagccag aagtgggcct catccaccag tactgccagg gttactggcg ccatgtgccc 2461 cccagcccca gggaggctcc aggggcaccc cggtctcctg agccccagga ccagaaaaag 2521 ccccggaacc gccggcacca ccctccggac acatgaggcc agctgcctgt gcctgccatg 2581 ggccagccta gcccttgtcc cttttaatat aaaagatata tatatatata tatatatata 2641 tataaaatat ctatattcta tacacaccct gcccctgcaa agacagtatt tattggtggg 2701 ttgaatatag cctgcctcag tggcagcatc ctccaaaact tagacccatg ctggtcagag 2761 acggcagaaa acagagcctg cctaaccagg cccagccagt tggtggggcc aggccaggac 2821 cacacagtcc ccagactcag ctggaagtct acctgctgga cagcctccgc caagatctac 2881 aggacaaagg gagggagcaa gccctactcg gatggggcac ggactgtcca ccttttctga 2941 tgtgtgttgt cagcctgtgc tgtggcatag acatggatgc gaggaccact ttggagactg 3001 gggtggcctc aagagcacac agagaaggga agaaggggcc atcacaggat gccagcccct 3061 gcctgggttg ggggcactca gccacgacca gccccttcct gggtatttat tctctattta 3121 ttggggatag gagaagaggc atcctgcctg ggtgggacag ccccttcagc cccttctccc 3181 ctccccgcct ggccagggca gggccacccc actctacctc cttagctttc cctgtgccac 3241 tttgactcag aggctgggag catagcagag gggccaggcc caggcagagc tgacgggagg 3301 ccccagctct gaggggaggg ggtccgtggt agaggcctgg ggccggtaga ggctccccag 3361 ggctccctta tgtccaccac ttcaggggat gggtgtggat gtaattagct ctggggggca 3421 gttgggtaga tgggtggggg ctcctggtgg ccttctgctg cccaggccac agccgccttt 3481 gggttccatc ttgctaataa acactggctc tgggactaga aaaaaaaaaa aaaaaaaaaa //