LOCUS BC042754 3814 bp mRNA linear HUM 09-MAR-2007
DEFINITION Homo sapiens low density lipoprotein receptor class A domain
containing 3, mRNA (cDNA clone MGC:42758 IMAGE:4828259), complete
cds.
ACCESSION BC042754
VERSION BC042754.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3814)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3814)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (02-JAN-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 72 Row: d Column: 23
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 31341355.
FEATURES Location/Qualifiers
source 1..3814
/db_xref="H-InvDB:HIT000097335"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:42758 IMAGE:4828259"
/tissue_type="Testis"
/clone_lib="NIH_MGC_97"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..3814
/gene="LDLRAD3"
/db_xref="GeneID:143458"
/db_xref="HGNC:HGNC:27046"
CDS 22..1059
/gene="LDLRAD3"
/codon_start=1
/product="low density lipoprotein receptor class A domain
containing 3"
/protein_id="AAH42754.2"
/db_xref="GeneID:143458"
/db_xref="HGNC:HGNC:27046"
/translation="MWLLGPLCLLLSSAAESQLLPGNNFTNECNIPGNFMCSNGRCIP
GAWQCDGLPDCFDKSDEKECPKAKSKCGPTFFPCASGIHCIIGRFRCNGFEDCPDGSD
EENCTANPLLCSTARYHCKNGLCIDKSFICDGQNNCQDNSDEESCESSQEPGSGQVFV
TSENQLVYYPSITYAIIGSSVIFVLVVALLALVLHHQRKRNNLVTLPVHRLQHPVLLS
RLVVLDHPHHCNVTYNVNNGIQYVASQAEQNASEVGSPPSYSEALLDQRPAWYDLPPP
PYSSDTESLNQADLPPYRSRSGSANSASSQAASSLLSVEDTSRSPGQPGPQEGTAEPR
DSEPSQGTEEV"
BASE COUNT 949 a 941 c 855 g 1069 t
ORIGIN
1 agcgggagcg gcggccgcgc catgtggctg ctggggccgc tgtgcctgct gctgagcagc
61 gccgcggaga gccagctgct ccccgggaac aacttcacca atgagtgcaa cataccaggc
121 aacttcatgt gcagcaatgg acggtgcatc ccgggcgcct ggcagtgtga cgggctgcct
181 gactgcttcg acaagagtga tgagaaggag tgccccaagg ctaagtcgaa atgtggccca
241 accttcttcc cctgtgccag cggcatccat tgcatcattg gtcgcttccg gtgcaatggg
301 tttgaggact gtcccgatgg cagcgatgaa gagaactgca cagcaaaccc tctgctttgc
361 tccaccgccc gctaccactg caagaacggc ctctgtattg acaagagctt catctgcgat
421 ggacagaata actgtcaaga caacagtgat gaggaaagct gtgaaagttc tcaagaaccc
481 ggcagtgggc aggtgtttgt gacttcagag aaccaacttg tgtattaccc cagcatcacc
541 tatgccatca tcggcagctc cgtcattttt gtgctggtgg tggccctgct ggcactggtc
601 ttgcaccacc agcggaagcg gaacaacctc gtgacgctgc ccgtgcaccg gctgcagcac
661 cctgtgctgc tgtcccgcct ggtggtcctg gaccaccccc accactgcaa cgtcacctac
721 aacgtcaata atggcatcca gtatgtggcc agccaggcgg agcagaatgc gtcggaagta
781 ggctccccac cctcctactc cgaggccttg ctggaccaga ggcctgcgtg gtatgacctt
841 cctccaccgc cctactcttc tgacacggaa tctctgaacc aagccgacct gcccccctac
901 cgctcccggt ccgggagtgc caacagtgcc agctcccagg cagccagcag cctcctgagc
961 gtggaagaca ccagccgcag cccggggcag cctggccccc aggagggcac tgctgagccc
1021 agggactctg agcccagcca gggcactgaa gaagtataag tcccagttat tccaaagtcc
1081 atatgggtta atctgctctg acttgttgcc attctaacaa tttgtgctca tgggaagctc
1141 tttaagcacc tgtaaggatg tctcaagtta cagtttggga tattaactat ctctgcattc
1201 ccctcctccc ccagacttca gagatgtttt tctggcgtct cagttgacat gatctgttgt
1261 gcgtcttttc tgtcaggtca ctcttccctt gggacccgag atcacaccct catttttcac
1321 attattctgt ttctgttgga gagacagcat ataaaacagt attgaaatag gctgggagag
1381 agcaatgttt ctgtgctata ttggatgctc agaagtgcag gagacgctgg acccaattct
1441 ctctgctggg tagttacctt atagcatttg gggatttggg ttagatgatc taaccaggag
1501 gccatcactg gatggtcacc cccccaaaaa aattccattt gagcatcaaa acctgctttg
1561 cacaatccta tttgatgccc ccagttcagc agagtcagtg gccaaagaaa actttggacg
1621 tgagtaacac ccttcagcag tcgcaacgtt attttggttt tgtgaaggac tctgaaacca
1681 tctaccctgt ataaattctg gctttagaaa tttgcccaag aatgctcatt ctgagagctt
1741 tcctcagcag catatatcat cagcctcatc ctaaaatagg cagggagccc ctcccatgag
1801 tttatccaag ttctcagctc ctaaaatgca ggctgccaag accctacacc tgccctggct
1861 ctacagccac ttacctggtt tctggactgt caccctccca gctgacctgc ccgtagccaa
1921 ggaatgagga cctaacttga gttggcccaa agtctgacct ggctgtatgt ccctgtggcc
1981 cacacccagc ctgtcttgct cattcatgca gcctcaacac tggcctccaa agttccctta
2041 acacttgcaa agtccttttt acctgtgcat ttggacttga ggacactggt ttctatcaca
2101 ggtgagagcc atgttcaata cctccagcaa gctctcctgg ctccctgcac tgtgcacgct
2161 cctcttccca aggtcccaat accagcacct ctagttagag ttagggtcag ggtcaggcct
2221 ctcccaacat cccagtagtt tctcctctga gacacatggg caagagacaa tttggagtca
2281 agattttcca tttggatcta ttttaaatct tttagaaatg catttgaaac agtgtgtttg
2341 ttttttccct tttagttaag ggactattta tatgtgtata ggaaagctgt ctcttttttt
2401 gtttttcctt taacaaggtc caaagaaaga tgcaaaagga gatcacaccc ttgccccgct
2461 gagccccgtg ataacaagtc actccagact aacctgtgtg ccagacattt gtgcattgtt
2521 gcactttgag gttattattt atcaagttct tgaaggaagc agaaagaggg actcctctct
2581 ccctccgtgt atagtctcta tgtttgtgct agtttttctt ttttttctct gtgtccagtc
2641 agccacaggg cccgcctccc tgcaggaata aggggtaaaa cgttaggtgt tgtttggcaa
2701 gaaaccacac tgactgatga ggggtaaaat ggaaccaggt agagccactc cgggcagctg
2761 tcacccattc agaacttctt tccgcagctg aagaaatgtt cagtaacctg tttgacgcta
2821 attaaaacag agcctgcagg aagtggggct aaagtggcat tcagtgatcc tgttctgtag
2881 acttttcttt ctttttttaa ccaaatccaa aggatgttac agaaaagcta gccactggta
2941 ttttgttttg tttaaaaaaa aaaagaaaga aagaaagaaa gaaaaacgga aaggaaccta
3001 gctgcctgta tctttcattt ttaaaatagc acttgagtta ttttctgagt aatccaataa
3061 agaacttttg atgacagcca gaatgtgtta gaactctggc tgaacatttc atctcctgtg
3121 agtcagaagg gctttatttc tccctttgat ggggcccctt cttctttctg gtgctctgga
3181 agttgtttag aggaaagaat tctaatttta attaattgcg cagtgagtta atctcactcg
3241 cttttctgct tccaggcatc ttaggaaaaa caaatggttt tagtagataa gggatgccta
3301 ctaatgcttt tttaaaacaa acagggacat ttttattata gatttgattt ttttaatgaa
3361 tgtttttaaa aatatataaa taggacacca aagcggcagg gttttttttg gggggagggg
3421 gtttgttttc caactcaaga tggcacatta gtggccagca atatttttta actcattcca
3481 accaggaagc ttttttatac attgcctaaa tctacgccaa ccagaaaata gtctcatctc
3541 tttttttctc aaatgagatc cgtgttttat tttagcatta aattagttac actgtgatga
3601 ctggcctatt acctgactca gctccctcta ccttgaaatt gacattttta aaaaatgcaa
3661 ctaagtggtt aatagtgtgt gacgctcaaa gttaatgtaa actggaaagg ttgtgtgtcg
3721 ttgctttttg tgttttggtt aggcttggtt ttgtttttta atttttatac tttctaataa
3781 atttgcagtt tcattcttaa aaaaaaaaaa aaaa
//