LOCUS BC042429 5449 bp mRNA linear HUM 09-DEC-2005
DEFINITION Homo sapiens hypothetical LOC442028, mRNA (cDNA clone MGC:42476
IMAGE:4822931), complete cds.
ACCESSION BC042429
VERSION BC042429.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 5449)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 5449)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (02-JAN-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 71 Row: g Column: 17.
FEATURES Location/Qualifiers
source 1..5449
/db_xref="H-InvDB:HIT000097226"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:42476 IMAGE:4822931"
/tissue_type="Testis"
/clone_lib="NIH_MGC_97"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..5449
/gene="LOC442028"
/db_xref="GeneID:442028"
CDS 1965..2564
/gene="LOC442028"
/codon_start=1
/product="LOC442028 protein"
/protein_id="AAH42429.1"
/db_xref="GeneID:442028"
/translation="MNCGGGGSSSLRPQIPATQGCWHLQQLRFHMVAHEVGVLAALTA
LQVVSGDGEGHLCGVQGALQPLLLGQEQVGLRSQRLHLTLQLRLPAVRVLQSLAHCAR
GVLLRALRQRLGLCGQLLALVPLPLRLVAVGEGLVVASIAVLEPLLQQVLGGAEAGGG
QAGGRVGARVTGHVVLFAGQLAGRHCLRHGACRPPGPGE"
BASE COUNT 1078 a 1559 c 1640 g 1172 t
ORIGIN
1 tgtgtatatg taatgccgaa gagaggttag ggtttcttta ggtttccgta ctttcctgtt
61 gagcactgcg gcgcaactcg ccttgctgcg gttggtggtg gcgatggaga ttgcagcgcg
121 gctgaaggga acctactggg ttggtgacat ttacaagaga gtcttgaaga ttttccagaa
181 cgggaaagat tttgaaagaa caaagaggaa ctacagaatc attgcttaca ttgacacaat
241 tgaatgggaa gccatcattc tttaaagggc aatgaccaag cagtaccagc agtaattgaa
301 gtaccagcag aaggctaaga agggatcatg gcacaagttg cagtttccac cctgcccatt
361 gaagatgagg agtccatgga agatgaggag tctgttgaag acgaggagtc cgttgaagat
421 gagtccgcgg agagcaggat gctggtgaca ttgctcatat cagctcttga gtccacgttc
481 tggaggccac aagtccaaaa tcaaggtgtg ggcagaaatg cgctccctct gcagactctt
541 ggggaggatc cttgcttctt ccaggtctgc gactgtggtt cctgcagcca ctggaaccag
601 ctctgcacag ctcagacctg agtgatgagg acacagcttc gcagctcctg aatgttccgg
661 atgagctcgg cttcctgagg gaggagacgc cctgagcacc agagccagtc cctggtgagg
721 atcccaggag gcccagctgc tgcaggcctt ggtcaacacc tgagcaacca caaggagttg
781 aatgccgggc ctgagctctg actgtggcct tctgtgggct gctgggaagg tccctcagcg
841 gcagttccca cgccccaggc ttcaggagtc atcgctgctg ctcactcagt gcacctggga
901 acgttggcct gcccttggcc tctggacagc ccctgaggac ccaaactctg ggggcccaga
961 tgcccgccca ggctgcccct cagggctctg tgctgggaaa ggccatcttc acaccaagaa
1021 caggagaagg accctgtgtt tcttcttatt gcctggccag tttaatttgc tgtgtgtagg
1081 aacaagcctt ttctctgtga ttggggtctt tgcctcaacc actgggtact tccttgtgtg
1141 ccagggcccg ggtcctgcgc ccctctatcc ctgggtttgc ctctccgtgc actgtcagtg
1201 tctccatcag ttggcaggtg cccttgttgc gggcagagag tttgcgggag ctgcaggagt
1261 tcttgaggca ctgagagagt gcagggggaa gggcctgcag aagggtaaag aagggaggag
1321 ggaaggcatg aggggaggga gggactcaag ggttcttgcc tgagcttggg gtatggcagg
1381 agaccagctg cccccacccc acatctttca cgaatgtcta caggcctgta gtggttctca
1441 gggaggcccc aggctctgag aggtcagaga attctccaga gccagcatct gggccaggac
1501 tgagttactc tctcaccctg tggggctgcc ccacagacaa gctggggtgg attgggaagt
1561 tataggggac atggaggaga ggggacctgt gggtgcagat ctttgtgtcc ccggctctgt
1621 ataggatgaa tgggagcagt ggctcccagc ccaccccacc ttacctgtcc acacctgcag
1681 tgctggccca gacctgggtt tccaccttgg gagcaactgt cccagcgagg gagggtctct
1741 ggggaggtgc cttgtggctt agcccaggga gcccagggtc aggatgactg tgccaggact
1801 caaagggatt agaggaggag aggagaaaca gctgcttgga agtcaggggt cttctggggc
1861 aaagctgcct cctgtcacta aggggccaga tttcgggact caggggtctc acgtgcagag
1921 ggctgggctc ccgcgtgctt gcagcagcca cgtggcttgt ccgcatgaac tgcggggggg
1981 ggggctcctc ctctctgcgc ccacaaatcc cggccaccca agggtgctgg caccttcagc
2041 agctccgttt ccacatggtc gcgcacgagg ttggggtgct cgcggcgctc acggcactgc
2101 aggttgtcag tggtgatgga gaagggcacc tctgtggcgt ccagggcgcg ctccagccgt
2161 tgcttctggg ccaggagcaa gttggtctcc gcagccagcg cctccatctc acgctgcagc
2221 tccgacttcc agctgtgcgt gtcctgcagt cgctcgccca ctgtgcgcgt ggagtcttgc
2281 tgcgtgcgct gcgccagcgc ctgggtctct gtggccagct gctggctctc gtgccgctgc
2341 cgctccgact ggtcgcggtc ggcgaaggcc tggtggtagc gagcatagca gttctggaac
2401 cactcctcca gcaggtactt ggaggtgcgg aagctggcgg tggccaggcc ggaggacgtg
2461 taggcgcccg tgttacgggc cacgtcgtac tctttgcagg gcagctcgca gggcggcact
2521 gtctgcgcca tggtgcctgc cgcccaccag ggccagggga gtgaggactg tgtgtggtca
2581 gccggttgcg gtcagcctag tgcggtcagc ggggcagctc caacggctca gtcccagagc
2641 aggacgcggc tcccagtcgc ttgggtgaca ctgtgtaaac caagagcttc ctgttgccaa
2701 gaaacgggat ctcttctcca gtagctaggg gaggggcatt cagggtggtg ggcagaactg
2761 ccctcttaaa gggccaggca gccccagccc caccatccct gtccccgcct cggggcaatc
2821 aacagtggcc aagggttcct gtcacttaga ggatcctggg gccagcccgt ctccagcctc
2881 tgagtcccac ccttagggtt cagggtgtgg gtggggacct actgccctgg ccccttcctt
2941 ggttcatcca tttgttcctg gtttgcgctc tgatcctgtc ctgtgcggag ctccgcgctc
3001 agggtgaaca agacaggaga ctctgctcag ttgcagccac cctagggcag agggctgtgg
3061 ctgtcgtgtg ggtgttgggt gtgctgactg atagtgttac ttgatgccgt acaggtggct
3121 gctctccctg ccctcctggc cccaacagca gcctggtagc acagggaggg ttccaggcca
3181 ggtcccctcg ggggcagtct gaggcagttc ctgcaggaac tctgctccat tttctcctgc
3241 acctagtgcc tgagagccag gccctggcct ctggccttct cctcccaagt ccaagccagg
3301 gtcccctcag gctgggcaca gcggggaggg agtctgagtg tgctcttcgc tggggagttg
3361 aattcagcct ctgggtaagt gtccagagtc agacgcccaa atctgcccca cagggcggag
3421 gcaggtcctg tgctgcggag gctgccctca aagccattca gggccaggct gcctggcgga
3481 ggctggatgg gcaggaagcg ccccaggaca catcggagtc cccctaacct ggggccaggg
3541 gagccccagc ctaggcgcga ttccccacac ggccagcgga gggcgacgtt ggtctggcac
3601 tgagaagcct gcggctcctg gctcggcctc ccctccgtct gcctggcgca tgcagtcctg
3661 gggaccccca gcccctccgg cctcctcttc tctgagagcc ccccaccagg aagtcctcac
3721 taggaagtcc atacccttcc tacagcacag acctctgggc ccctgttctc tccaccttca
3781 ccccctctcc caccacagac cacaccctca ctccagccac aggagccgga gctcctcctg
3841 ggccattccc accaccccgc ccagggtctc tccagcccca ccatgtgccg gccagtgccc
3901 tcctcctgga cctgacctcc acccgtcctg gcctctcccg cggccagaac cctcagtcca
3961 tgctgctgtc accacggtgc gcctggcctg acacagcctc ctgatggggc ttttgaggac
4021 agcagcccgg agacttaccc taacccaggc cgagtcagaa cctgtggcag gcggcctggg
4081 aacctcttct tactgtccat caaaattggg aggtcagggg accttcaggg actggtgtgg
4141 tctgagaaac atcctcgagc ctcgccatga ctcagtttcc ccagatggca gcaggctgga
4201 gcccacacgc agggcaggat gccaggctcc accttttgtc tggaacctgc attcactggg
4261 cacctctctt taggcagagc agagcagagc tgcccgtgtt tgtcccctga tctgtggccc
4321 caggagcccg agagaccacc tgagccaacg agaaggcctc tgggccagag cccagctctg
4381 cgaagtggga gacttctcag cctccacttc caggtgccct gaagtcgttg gcagggggtg
4441 ctgcctgctt ggggctccca gactaaggga acacattcat gtggtgacca cgataggccc
4501 tgcaggctga ggcacaggat ttgaccaagg acgcatcaga gataggagac tgggccctca
4561 ctcctgccag ctgcaaactc ccaaagcccc cagccctctc atggggtgaa gatgccctga
4621 aggacactcc agtgtgctcc cacctctggg ttctgccagc cagagagtgg gaccctcagg
4681 ccacatgtgt cttgctggat ctcagcttta gggacccatc gtgctggcag ctccctgaga
4741 cctgggtcag ggggtgtcca ttagagcacc ttggtcagga cccagagatg gggagggcag
4801 ttggcatctc cagaaagcag gaggtggggc atggctctgt gacagacgtc cctgtgacag
4861 ggaggattgg agggacagag gggcgtgctc aggggcggag gggcagatga ggccaccaaa
4921 gggcaccttg aacactggat ggccccagga aggcccttga accccatcct gattgatcca
4981 gggcctgtga ccttggccca gactgcaggc ctggggactt gatttccttt agtttcttaa
5041 gaaactacta tactcctttt tggcatagct gtacgatttt acattcccac cagtaatgtg
5101 tgaaagctct agtttttact catgctcctc agcgtttgat gttttatttt tattttagct
5161 attctgatat atatgtgtta gtcattgtgg tcttaatttg caaatttcta atgactaatg
5221 atatttaaca ccttttcttg ttcataatta aataccatct gtattccttt tcgcatatca
5281 tcaacacaac cgtgaaaaat cagaacaaaa tttttcagac gacttcaaaa tttttagaac
5341 aatactcaag ggaaaaggtg tttatttaga acaatgaaaa caatgagaca ttaacttcca
5401 ggttaaataa agttgattgt gtgcataaaa atggaaaaaa aaaaaaaaa
//