LOCUS BC042075 3619 bp mRNA linear HUM 21-OCT-2003
DEFINITION Homo sapiens collagen, type XXII, alpha 1, mRNA (cDNA clone
IMAGE:5742944), partial cds.
ACCESSION BC042075
VERSION BC042075.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3619)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3619)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (23-DEC-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Life Technologies, Inc.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 88 Row: k Column: 21.
FEATURES Location/Qualifiers
source 1..3619
/db_xref="H-InvDB:HIT000097104"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:5742944"
/tissue_type="Brain, adult medulla"
/clone_lib="NIH_MGC_119"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene <1..3619
/gene="COL22A1"
/db_xref="GeneID:169044"
CDS <1..2566
/gene="COL22A1"
/codon_start=2
/product="COL22A1 protein"
/protein_id="AAH42075.1"
/db_xref="GeneID:169044"
/translation="CILAAKTAPGLKQLNGEPGERGEDGLPGKPGLRGEIGEQGLAGR
PGEKGEAGLPGAPGFPGVRGEKGDQGEKGELGLPGLKGDRGEKGEAGPAGPPGLPGTT
SLFTPHPRMPGEQGPKGEKGDPGLPGEPGLQGRPGELGPQGPTGPPGAKGQEGAHGAP
GAAGNPGAPGHVGAPGPSGPPGSVGAPGLRGTPGKDGERGEKGAAGEEGSPGPVGPRG
DPGAPGLPGPPGKGKDGEPGLRGSPGLPGPLGTKGDRGAPGIPGSPGSRGDPGIGVAG
PPGPSGPPGDKGSPGSRGLPGFPGPQGPAGRDGAPGNPGERGPPGKPGLSSLLSPGDI
NLLAKDVCNDCPPGPPGLPGLPGFKGDKGVPGKPGREGTEGKKGEAGPPGLPGPPGIA
GPQGSQGERGADGEVGQKGDQGHPGVPGFMGPPGNPGPPGADGIAGAAGPPGIQGSPG
KEGPPGPQGPSGLPGIPGEEGKEGRDGKPGPPGEPGKAGEPGLPGPEGARGPPGFKGH
TGDSGAPGPRGESGAMGLPGQEGLPGKDGDTGPTGPQGPQGPRGPPGKNGSPGSPGEP
GPSGTPGQKGSKGENGSPGLPGFLGPRGPPGEPGEKGVPGKEGVPGKPGEPGFKGERG
DPGIKGDKGPPGGKGQPGDPGIPGHKGHTGLMGPQGLPGENGPVGPPGPPGQPGFPGL
RGESPSMETLRRLIQEELGKQLETRLAYLLAQMPPAYMKSSQGRPGPPGPPGKDGLPG
RAGPMGEPGRPGQGGLEGPSGPIGPKGERGAKGDPGAPGVGLRGEMGPPGIPGQPGEP
GYAKDGLPGIPGPQGETGPAGHPGLPGPPGPPGQCDPSQCAYFASLAARPGNVKGP"
BASE COUNT 912 a 941 c 1100 g 666 t
ORIGIN
1 ctgcattctg gctgcaaaaa cagctcctgg tttgaaacaa cttaatggag aaccaggaga
61 aagaggggaa gatggtctgc ctggaaaacc aggccttcgg ggagaaattg gggagcaggg
121 cctggcaggc cgacctggag agaagggaga agcaggcctc ccaggggctc caggcttccc
181 aggtgtgaga ggagagaaag gagaccaggg agaaaaaggt gaactgggac ttccaggact
241 gaaaggtgac cgaggtgaaa agggtgaagc tggtcctgca ggccctcccg ggttacctgg
301 aactacatcc ctgttcacac cacatccacg gatgcccgga gaacaagggc ccaaaggaga
361 gaagggcgat ccaggcctgc ctggggaacc gggactgcag ggccgtcctg gagaattggg
421 gcctcaggga cccactggac caccgggtgc caagggacag gaaggtgcac atggggctcc
481 tggagcagct ggaaaccccg gtgctcccgg acatgtcggt gcccccggtc ccagtggccc
541 tccaggaagt gtgggtgctc ccggcctcag aggcacccca gggaaagatg gggagcgtgg
601 tgagaagggt gcagcggggg aagaaggcag cccagggcca gttggtccca ggggagatcc
661 tggtgctcct gggctccctg ggccgcccgg aaaagggaag gatggagagc cgggactccg
721 tggatcacct ggactccctg gacccctagg aaccaagggg gatcgaggag ctcctgggat
781 ccctggttct cctggcagcc gtggtgaccc aggcattggg gttgctggcc ctcctggccc
841 ttccggacca ccaggagaca aaggatcccc gggatcacga ggcttacctg gattccctgg
901 cccccagggc ccagccggcc gggacggtgc accaggaaat ccaggagaaa gagggcctcc
961 tggcaagccg ggcctctctt cactactgtc tccaggggac ataaatctct tggctaagga
1021 tgtgtgcaat gactgccctc ctggcccccc aggcctccct ggtctaccag gttttaaagg
1081 ggacaaaggt gtcccaggaa agccagggag agaaggcaca gaagggaaaa agggagaggc
1141 tgggcctcca ggcctaccag ggcccccagg aatagctgga ccacagggaa gtcaaggaga
1201 acgtggtgca gatggtgagg ttgggcagaa aggtgatcag ggtcatcctg gagttccagg
1261 tttcatgggg cccccaggga accccgggcc accaggggca gatggaattg caggagctgc
1321 tggaccacca ggaatccaag ggtcacctgg gaaagaaggc cctcctggcc cccaaggccc
1381 atctggatta cccggaatcc caggagaaga aggcaaagag ggcagagatg gaaagccggg
1441 tccccctgga gagccgggca aagcaggaga gccaggtcta ccaggaccag agggtgcccg
1501 aggcccacct ggcttcaagg gacacacagg cgattctggt gcacccggtc cccggggaga
1561 gtctggtgcc atggggcttc ctggtcagga agggttacca ggaaaagatg gtgacactgg
1621 acccactggg ccacagggtc cccaaggacc aaggggccca ccgggcaaga atggatcacc
1681 gggatctcca ggagagcctg gcccttcagg aacccctggc cagaaaggaa gcaaagggga
1741 aaatggcagc ccaggacttc ctggcttcct gggtccccgt gggcctccgg gagaaccagg
1801 agagaaagga gtcccaggca aggagggggt ccctgggaag cctggagagc ctggattcaa
1861 aggagaaagg ggagatcctg ggatcaaagg tgacaaagga cctcctggtg gaaaaggcca
1921 gcctggggac cctggaatcc caggccacaa aggccacaca ggcctgatgg gtccccaagg
1981 actacctggg gagaatggac cagttggacc cccagggcct ccaggccagc cgggatttcc
2041 aggactgagg ggggagtctc catccatgga aaccctgcgt cggcttattc aagaagagct
2101 ggggaagcag cttgaaacca gactcgccta cctcctggcc cagatgcccc cggcgtacat
2161 gaagtcatct caaggcagac ctgggccccc agggccccct ggaaaagatg ggcttccagg
2221 ccgggccggc cccatggggg agccaggtcg tcctgggcag gggggtctgg aaggaccctc
2281 tggacccata ggtcccaaag gtgagcgagg agccaaaggt gacccaggtg cacctggagt
2341 tggcctccga ggcgagatgg gaccccctgg aatcccaggt caacccgggg aacctggcta
2401 tgctaaagat ggacttcctg ggatccctgg ccctcaaggg gagacaggac cagctggaca
2461 tcctggcctc ccaggacctc ccggtccccc aggccaatgt gacccttccc agtgtgccta
2521 cttcgccagc cttgctgccc ggccgggtaa tgtgaagggt ccctaaagga ctctggaaag
2581 ccagaagact gcagtggatt tctgaaactt gaactcagag cccagtggga agccagaggt
2641 cttgaaagac ttcagccatg tgttcctttt tttttctttc ttttatcgtt tgctttttgt
2701 tttattttct tgagagacct caaaattatt aaatccaaca gacgctgccg gtcggtcaga
2761 ttattattaa tattattgtt gttgttaatt attattatta tttcatatgc tgatgctttg
2821 tgagttcttt tccactcctt taaagttggg aaaacttgat tcgtggggca ggagattgtt
2881 tcttcattct tctgacagcc cccatctgac gcgtaactgc ccattttaag gaaactcttg
2941 gtgctacaaa accctgacca gacacttggc aaatttacct ctttcttcaa aagaaaaact
3001 ttaagaaaat gagccaatgg gcttcattct cagtcatgcc cggagatcac ccaggagaaa
3061 taatacaaac accaccactg tccagagaga gtaaagaagc agaaagagaa agaatttgca
3121 accatgagga atgttcccac ctcccgacgg gacgtgcatt tggaaaacac agaatcagcc
3181 ctcagggtgc actccagcca cctcagtgct ctaagctcac agaagtgaaa taatgtctgt
3241 gggttggcaa tggctttgtg ggatcatatg tcttggccaa agatgggaaa acctatgttg
3301 aagaggcagc ccttgagtgt taatttgtct tctaaactgt gtaaggcccc ttcaagttcc
3361 tcttgttggt ttcaattata ttaattataa aacaagtgga tgtggtgacc atccacttgt
3421 gtttccctaa tgatgggcag ttggccaggg cactgaccag agctgggaaa tttgtatctc
3481 caaggcggct ctgtctctga aataaatggc atcaagtgca tgtgtgtatg cgacatgccc
3541 tgcctgaaca ggtgctcaat aaatccaagt ttccttcaaa aaaaaaaaaa aaaaaaaaaa
3601 aaaaaaaaaa aaaaaaaaa
//