LOCUS BC042047 3779 bp mRNA linear HUM 11-AUG-2006
DEFINITION Homo sapiens hect domain and RLD 6, mRNA (cDNA clone MGC:50367
IMAGE:5531519), complete cds.
ACCESSION BC042047
VERSION BC042047.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3779)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3779)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (23-DEC-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 88 Row: e Column: 2
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 61563741.
FEATURES Location/Qualifiers
source 1..3779
/db_xref="H-InvDB:HIT000097079"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:50367 IMAGE:5531519"
/tissue_type="Uterus, leiomyosarcoma"
/clone_lib="NIH_MGC_71"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..3779
/gene="HERC6"
/gene_synonym="FLJ20637"
/db_xref="GeneID:55008"
/db_xref="HGNC:HGNC:26072"
/db_xref="MIM:609249"
CDS 60..3128
/gene="HERC6"
/gene_synonym="FLJ20637"
/codon_start=1
/product="hect domain and RLD 6"
/protein_id="AAH42047.2"
/db_xref="GeneID:55008"
/db_xref="HGNC:HGNC:26072"
/db_xref="MIM:609249"
/translation="MYFCWGADSRELQRRRTAGSPGAELLQAASGERHSLLLLTNHRV
LSCGDNSRGQLGRRGAQRGELPEPIQALETLIVDLVSCGKEHSLAVCHKGRVFAWGAG
SEGQLGIGEFKEISFTPKKIMTLNDIKIIQVSCGHYHSLALSKDSQVFSWGKNSHGQL
GLGKEFPSQASPQRVRSLEGIPLAQVAAGGAHSFALSLCGTSFGWGSNSAGQLALSGR
NVPVQSNKPLSVGALKNLGVVYISCGDAHTAVLTQDGKVFTFGDNRSGQLGYSPTPEK
RGPQLVERIDGLVSQIDCGSYHTLAYVHTTGQVVSFGHGPSDTSKPTHPEALTENFDI
SCLISAEDFVDVQVKHIFAGTYANFVTTHQDTSSTRAPGKTLPEISRISQSMAEKWIA
VKRRSTEHEMAKSEIRMIFSSPACLTASFLKKRGTGETTSIDVDLEMARDTFKKLTKK
EWISSMITTCLEDDLLRALPCHSPHQEALSVFLLLPECPVMHDSKNWKNLVVPFAKAV
CEMSKQSLQVLKKCWAFLQESSLNPLIQMLKAAIISQLLHQTKTEQDHCNVKALLGMM
KELHKVNKANCRLPENTFNINELSNLLNFYIDRGRQLFRDNHLIPAETPSPVIFSDFP
FIFNSLSKIKLLQADSHIKMQMSEKKAYMLMHETILQKKDEFPPSPRFILRVRRSRLV
KDALRQLSQAEATDFCKVLVVEFINEICPESGGVSSEFFHCMFEEMTKPEYGMFMYPE
MGSCMWFPAKPKPEKKRYFLFGMLCGLSLFNLNVANLPFPLALYKKLLDQKPSLEDLK
ELSPRLGKSLQEVLDDAADDIGDALCIRFSIHWDQNDVDLIPNGISIPVDQTNKRDYV
SKYIDYIFNVSVKAVYEEFQRGFYRVCEKEILRHFYPEELMTAIIGNTDYDWKQFEQN
SKYEQGYQKSHPTIQLFWKAFHKLTLDEKKKFLFFLTGRDRLHARGIQKMEIVFRCPE
TFSERDHPTSITCHNILSLPKYSTMERMEEALQVAINNNRGFVSPMLTQS"
BASE COUNT 1104 a 826 c 887 g 962 t
ORIGIN
1 ggagcctgtc gcagcgggac cgacggaatc cggagcaggc gacagggcgc agaagcggga
61 tgtacttctg ttggggcgcc gactccaggg agctgcagcg ccggaggacg gcgggcagcc
121 ccggggctga gctactgcag gcggccagcg gggagcgcca ctctctgctg ctgctgacca
181 accacagggt cctctcgtgc ggagacaaca gcaggggtca gctgggccgc aggggcgcgc
241 agcgcgggga gctgccagaa ccaattcagg cattggaaac cctaattgtt gatctcgtga
301 gctgcgggaa ggagcactcc ctggctgtgt gccacaaagg aagggtcttc gcatggggag
361 ctggttctga agggcagctg gggattggag aattcaagga aataagtttc acacctaaga
421 aaataatgac tctgaatgat ataaaaataa tacaagtttc ctgtggacac taccactccc
481 tggcattatc aaaagatagc caagtgtttt cgtggggaaa gaacagccat gggcagctgg
541 gcttggggaa ggagttcccc tcccaagcca gcccgcagag ggtgaggtcc ctggagggga
601 tcccactggc tcaggtggct gccggagggg ctcacagctt tgccctgtct ctctgtggga
661 cttcgtttgg ctggggaagt aacagtgccg ggcagctggc cctcagtggg cgtaatgtcc
721 cagtgcaaag caacaagcct ctctcagtcg gtgcactgaa gaatctaggt gtggtttata
781 tcagctgtgg tgatgcacac actgcggtgc ttacccagga cgggaaagtg ttcacatttg
841 gagacaatcg ctctggacag ctgggataca gccccactcc tgagaagaga ggtccacaac
901 ttgtggaaag aattgatggc ctagtttcgc agatagattg tggaagttat cacaccctgg
961 catatgtgca caccactggt caggtggtat cttttggtca tggaccaagt gacacaagca
1021 agccaactca tccggaggcc ctgacagaga actttgacat tagctgcctg atttctgctg
1081 aagacttcgt ggatgttcaa gtcaaacaca tttttgctgg aacatatgcc aactttgtga
1141 caactcatca ggatactagt tccacacgtg ctcccgggaa aaccctgcca gaaataagcc
1201 gaattagcca gtccatggca gaaaaatgga tagcagtgaa aagaagaagt actgaacatg
1261 aaatggctaa aagtgaaatt agaatgatat tttcatctcc tgcttgtctg actgcaagtt
1321 ttttaaagaa aagaggaact ggagaaacga cttccattga tgtggactta gaaatggcaa
1381 gagatacctt caagaagtta acaaaaaagg aatggatttc ttccatgata actacgtgtc
1441 tcgaggatga tctgctcaga gctcttccat gccattctcc acaccaagaa gctttatcag
1501 ttttcctcct gctcccagaa tgtcctgtga tgcatgattc taagaactgg aagaacctgg
1561 tggttccatt tgcaaaggct gtgtgtgaaa tgagtaaaca atctttgcaa gtcctaaaga
1621 agtgttgggc atttttgcaa gaatcttctc tgaatccgct gatccagatg cttaaagcag
1681 ccatcatctc tcagctgctt catcagacta aaaccgaaca ggatcactgt aatgttaaag
1741 ctcttttagg aatgatgaaa gaactgcata aggtaaacaa agctaactgt cgactaccag
1801 aaaatacttt caacataaat gaactctcca acttattaaa cttttatata gatagaggaa
1861 gacagctctt tcgggataac cacctgatac ctgcagaaac ccccagtcct gttattttca
1921 gtgattttcc atttatcttt aattcgctat ccaaaattaa attattgcaa gctgattcac
1981 atataaagat gcagatgtca gaaaagaaag catacatgct tatgcatgaa acaattctgc
2041 aaaaaaagga tgaatttcct ccatcaccca gatttatact tagagtcaga cgaagtcgcc
2101 tggttaaaga tgctctgcgt caattaagtc aagctgaagc tactgacttc tgcaaagtat
2161 tagtggttga atttattaat gaaatttgtc ctgagtctgg aggggttagt tcagagttct
2221 tccactgtat gtttgaagag atgaccaagc cagaatatgg aatgttcatg tatcctgaaa
2281 tgggttcctg catgtggttt cctgccaagc ctaaacctga gaagaaaaga tatttcctct
2341 ttggaatgct gtgtggactc tccttattca atttaaatgt tgctaacctt cctttcccac
2401 tggctctgta taaaaaactt ctggaccaaa agccatcatt ggaagattta aaagaactca
2461 gtcctcggtt ggggaagagt ttgcaagaag ttctagatga tgctgctgat gacattggag
2521 atgcgctctg catacgcttt tctatacact gggaccaaaa tgatgttgac ttaattccaa
2581 atgggatctc catacctgtg gaccaaacca acaagagaga ctatgtttct aagtatattg
2641 attacatttt caacgtctct gtaaaagcag tttatgagga atttcagaga ggattttata
2701 gagtctgtga gaaggagata cttagacatt tctaccctga agaactaatg acagcaatca
2761 ttggaaatac tgattatgac tggaaacagt ttgaacagaa ttcaaagtat gagcaaggat
2821 accaaaaatc acatcctact atacagttgt tttggaaggc tttccacaaa ctaaccttgg
2881 atgaaaagaa aaaattcctc tttttcctta caggacgtga taggctgcat gcaagaggca
2941 tacagaaaat ggaaatagta tttcgctgtc ctgaaacttt cagtgaaaga gatcacccaa
3001 catcaataac ttgtcataat attctctccc tccctaagta ttctacaatg gaaagaatgg
3061 aggaagcact tcaagtagcc atcaacaaca acagaggatt tgtctcaccc atgctcacac
3121 agtcataatc acctctgaga gactcagggt gggctttctc acacttggat ccttctgttc
3181 ttccttacac ctaaataata caagagatta atgaatagtg gttagaagta gttgagggag
3241 agattggggg aatggggaga tgatgatgat ggtcaaaggg tgcaaaatct cacacaagac
3301 tgaggcagga gaatagggta cagagatagg gatctaagga tgacttggac acactccctg
3361 gcactgaaga gtctgaacac tggcctgtga ttggtccatt ccaggacctt catttgcata
3421 aggtatcaaa ccacatcagc ctctgattgg ccatgggcca gacctgcact ctggccaatg
3481 attggttcat tccaggacat tcatttgcat aaggagtcaa accacaccag tcttggattg
3541 gctgtgagcc aattcacctc agtctctaat tggctgtgag tcagtctttc atttacatag
3601 ggtgtaacca tcaagaaacc tctacagggt acttaagccc cagaagattt tgctaccagg
3661 gctcttgagc cacttgctct agcccactcc caccctgtgg aatgtacttt cacttttgct
3721 gcttcactgc cttgtgctcc aataaatcca ctccttcacc acccaaaaaa aaaaaaaaa
//