LOCUS BC042018 2017 bp mRNA linear HUM 28-JUL-2005
DEFINITION Homo sapiens pogo transposable element with ZNF domain, mRNA (cDNA
clone IMAGE:5312053).
ACCESSION BC042018
VERSION BC042018.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2017)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2017)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (23-DEC-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 77 Row: o Column: 20.
FEATURES Location/Qualifiers
source 1..2017
/db_xref="H-InvDB:HIT000097055"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:5312053"
/tissue_type="Brain, hypothalamus"
/clone_lib="NIH_MGC_96"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
BASE COUNT 573 a 393 c 375 g 676 t
ORIGIN
1 tatttggttt ctatttttta attttatacc accactcccc cctgaagttg acttacactt
61 ccctgtggat ttgtggatta attaggaaaa ccaatagtaa tcacgtctga gccaaggagc
121 tggcccattg gtcattcact tctgctaaaa acaggttttt gtgacttttt ttttttttaa
181 atttaaatca ctgtgtttgg tatttttctg acaaaattaa gaaaaagaaa aaaaattatt
241 tgtgggcaaa tgttaaattt ttttgtttcc ccttttacct caattgtatc atagtactgg
301 gtttttttgt ttgttttatt gtgtggccaa tgtctttggg catgatgcta tctaatcatt
361 gttaatgtga gaacatttct gaagatggga aagacaaatt atgtagctca caaactggtt
421 tattatatat atggataaaa aacttttttc attgtggtct taacactttt atataaaaat
481 gaaaatggaa aaaaagtccc actgaactct ctcttccttc tccttttctt tccttccctc
541 tccagagatg ttggtttcta cagcaaccct agatataaaa ttgtggcttt aaaaatgcat
601 gaaaccacct ttaattatcc agaatgaata gatttgtctt ttcctcacca ccttccctcc
661 aaaacatgac ataaacaata ttttttgcac ttgtgatcct tggccccttt ccccattctc
721 aacaccatcc atccctctgg acaaaggatc atacaggtgt tattagcaag caagggatac
781 tgaagcgatc aaacggtttt agggtggaag ccattcccag tttgagtctt catcctgtaa
841 gcccccaggg gcagtccctg ctttactgaa cttcatcctg ttagatggag agcatgcctg
901 tttaagggat tactggtcct acagccagga gctaattgtt caagaagtgt tgaacttaaa
961 agacaagacc acttgttgaa atccagcgtg ctctgtggct ttcccctatt tctcttaata
1021 cttagggaag aatctgacag gaagaagcgc acaggggtgt gcacaaagaa aatgacatga
1081 atctttattt ttcactgcca gcttcaagga aagaaaattt tttctacaat ttgcatgagg
1141 gattttttta gttgtatgta ctcatggttg taaaccaaaa cgtactgtac cgtacagaga
1201 aaaggagcaa aaaaccaagt cttctgttta tcctgaggct ttccacaatg ttcccctcct
1261 gtgagccagg gaggcaaact gcacaagctt gtaaatggtt cgtctttaaa atgtacataa
1321 gtggaacatt taataaaatg aggggaaatg gatttataaa cttgtttttt ttctaggtga
1381 ccctgtttaa taggctttca cagactgggg aatgctcaag atgtgatggg cctggtggta
1441 caggtgtgac atttgttacc acccatttct cccaccacac cctgcttttt tgtttgtttg
1501 ttttttcatc ccccagcaca ctataatata gtgaactgga aaagtccctt ccagaaacag
1561 cttggccagc tttgtgaacc tttgacatct gaaaacaacc aaggatccat ctgggcttct
1621 cttccccagc tttttgcctg atgccatttt attgacagac aatggacttt gaagtcagcc
1681 tttgcctttg agaaagttca agaactatgg ttggtcacgt ctatctacaa cctaatccta
1741 ctctttggta gtctctgcag cagccacagc cttagcagag ctggggttcc tgtcttctgc
1801 acacgattga ctttcttgat gggtaatttt tttaagatta taccaacagt ggatcagctg
1861 ggttttggcc aggaagttgt ctttgtggac tctgcctgca tggcttagta gtagaaggaa
1921 attttttttt ggttttgttt tttataattc agtttaatca ataaacatgt atttattgac
1981 tgttaaaaaa aaaaaaaaaa agaaaaaaaa aaaaaaa
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