LOCUS BC041878 4071 bp mRNA linear HUM 29-AUG-2005 DEFINITION Homo sapiens clock homolog (mouse), mRNA (cDNA clone MGC:43753 IMAGE:5272026), complete cds. ACCESSION BC041878 VERSION BC041878.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 4071) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 4071) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (23-DEC-2002) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Miklos Palkovits, M.D., Ph.D. cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki Toshiyuki and Piero Carninci (RIKEN) cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Sequencing Group at the Stanford Human Genome Center, Stanford University School of Medicine, Stanford, CA 94305 Web site: http://www-shgc.stanford.edu Contact: (Dickson, Mark) mcd@paxil.stanford.edu Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, R. M. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 74 Row: p Column: 5 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 25777594. FEATURES Location/Qualifiers source 1..4071 /db_xref="H-InvDB:HIT000096920" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:43753 IMAGE:5272026" /tissue_type="Testis" /clone_lib="NIH_MGC_97" /lab_host="DH10B" /note="Vector: pBluescriptR" gene 1..4071 /gene="CLOCK" /gene_synonym="KIAA0334" /db_xref="GeneID:9575" /db_xref="MIM:601851" CDS 927..3467 /gene="CLOCK" /gene_synonym="KIAA0334" /codon_start=1 /product="CLOCK protein" /protein_id="AAH41878.1" /db_xref="GeneID:9575" /db_xref="MIM:601851" /translation="MLFTVSCSKMSSIVDRDDSSIFDGLVEEDDKDKAKRVSRNKSEK KRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKEITAQSDASEIRQDWKP TFISNEEFTQLMLEALDGFFLAIMTDGSIIYVSESVTSLLEHLPSDLVDQSIFNFIPE GEHSEVYKILSTHLLESDSLTPEYLKSKNQLEFCCHMLRGTIDPKEPSTYEYVKFIGN FKSLNSVSSSAHNGFEGTIQRTHRPSYEDRVCFVATVRLATPQFIKEMCTVEEPNEEF TSRHSLEWKFLFLDHRAPPIIGYLPFEVLGTSGYDYYHVDDLENLAKCHEHLMQYGKG KSCYYRFLTKGQQWIWLQTHYYITYHQWNSRPEFIVCTHTVVSYAEVRAERRRELGIE ESLPETAADKSQDSGSDNRINTVSLKEALERFDHSPTPSASSRSSRKSSHTAVSDPSS TPTKIPTDTSTPPRQHLPAHEKMVQRRSSFSSQSINSQSVGSSLTQPVMSQATNLPIP QGMSQFQFSAQLGAMQHLKDQLEQRTRMIEANIHRQQEELRKIQEQLQMVHGQGLQMF LQQSNPGLNFGSVQLSSGNSSNIQQLAPINMQGQVVPTNQIQSGMNTGHIGTTQHMIQ QQTLQSTSTQSQQNVLSGHSQQTSLPSQTQSTLTAPLYNTMVISQPAAGSMVQIPSSM PQNSTQSAAVTTFTQDRQIRFSQGQQLVTKLVTAPVACGAVMVPSTMLMGQVVTAYPT FATQQQQSQTLSVTQQQQQQSSQEQQLTSVQQPSQAQLTQPPQQFLQTSRLLHGNPST QLILSAAFPLQQSTFPQSHHQQHQSQQQQQLSRHRTDSLPDPSKVQPQ" BASE COUNT 1281 a 855 c 851 g 1084 t ORIGIN 1 gtctgactcc agcgaccgcg cgcgggttcg agggttggcg gcgaggcgct cggtttctct 61 tcttccgtcc acccgcgctt cccgttcccc gtcaccgccg ctggcgtttg tagatttctt 121 tccgccagtg aagctgggtt ttctggagtt ggctctggcg ctctggcccc tggagtgtaa 181 tttcctacac gcagcgccgc agagtttata ttctttgaaa gtgtttgtag ctttgtagag 241 gtcctcttgt tgatggtagg tgagcctaat tctgcaagat aaaagcctag tctctgacct 301 ggcagatgaa agatcaaatc agattgtggt ttcctgctat tagaatgccg tgctattaga 361 ctttaaggct ttttagcctt ctttaaaaaa taaaaaaatt tttacagtgg aagaaaagca 421 caagaagtaa acttttacag tcgttgattt gactataacg ctgatccccc caaatcaaag 481 aatttttact tgttcctgca aagctgctgg agctcagaag ctgattctat cacattgtaa 541 gatgcctttg gataattcta cagtcctctt aaatgaatct ttagaacttg gcaagtctca 601 ctagatacct tcaatcatca ttttgagctc aaagaattct gagacttatg gttggtcata 661 tagaagagta ccttgaacct atagtttcct gaagaatcag tttaaaagat ccaaggagta 721 caaaaggcag ttattggagg aattactcaa caaaaataaa gaagtaaact aaaaaagatg 781 aaggcatagg atacaagtaa cagggaatat gacctaacta gagacccagg gaatcaccag 841 gatgatgatg aataatgatc acaagaagac agcttgtcct caggagaagt acaaatgtct 901 actacaagac gaaaacgtag tatgttatgt tgtttaccgt aagctgtagt aaaatgagct 961 cgattgttga cagagatgac agtagtattt ttgatgggtt ggtggaagaa gatgacaagg 1021 acaaagcgaa aagagtatct agaaacaaat ctgaaaagaa acgtagagat caatttaatg 1081 ttctcattaa agaactggga tccatgcttc ctggtaatgc tagaaagatg gacaaatcta 1141 ctgttctgca gaaaagcatt gattttttac gaaaacataa agaaatcact gcacagtcag 1201 atgctagtga aattcgacag gactggaaac ctacattcat tagtaatgaa gagtttacac 1261 aattaatgtt agaggctctt gatggttttt ttttagcaat catgacagat ggaagcataa 1321 tatatgtgtc tgagagtgta acttcattac ttgaacattt accatctgat cttgtggatc 1381 aaagtatatt taattttatc ccagaagggg aacattcaga ggtttataaa atactctcta 1441 ctcatctgct ggaaagtgat tcattaaccc cagaatattt aaaatcaaaa aatcagttag 1501 aattctgttg tcacatgctg cgaggaacaa tagacccaaa ggagccatct acctatgaat 1561 atgtaaaatt tataggaaat ttcaaatctt taaacagtgt atcctcttca gcacacaatg 1621 gttttgaagg aactatacaa cgcacacata ggccatctta tgaagataga gtttgttttg 1681 tagctactgt caggttagct acacctcagt tcatcaagga aatgtgcact gttgaagaac 1741 ccaatgaaga gtttacatct agacatagtt tagaatggaa gtttctgttt ctagatcaca 1801 gggcaccacc cataataggg tatttgccat ttgaagttct gggaacatca ggctatgatt 1861 actatcatgt ggatgaccta gaaaatttgg caaaatgtca tgagcactta atgcaatatg 1921 ggaaaggcaa atcatgttat tataggttcc tgactaaggg gcaacagtgg atttggcttc 1981 agactcatta ttatatcact taccatcagt ggaattcaag gccagagttt attgtttgta 2041 ctcacactgt agtaagttat gcagaagtta gggctgaaag acgacgagaa cttggcattg 2101 aagagtctct tcctgagaca gctgctgaca aaagccaaga ttctgggtca gataatcgta 2161 taaacacagt cagtctcaag gaagcattgg aaaggtttga tcacagccca accccttctg 2221 cctcttctcg gagttcaaga aaatcatctc acacggccgt ctcagaccct tcctcaacac 2281 caaccaagat cccgacggat acgagcactc cacccaggca gcatttacca gctcatgaga 2341 agatggtgca aagaaggtca tcatttagta gtcagtccat aaattcccag tctgttggtt 2401 catcattaac acagccagtg atgtctcaag ctacaaattt accaattcca caaggcatgt 2461 cccagtttca gttttcagct caattaggag ccatgcaaca tctgaaagac caattggaac 2521 aacggacacg catgatagaa gcaaatattc atcggcaaca agaagaacta agaaaaattc 2581 aagaacaact tcagatggtc catggtcagg ggctgcagat gtttttgcaa caatcaaatc 2641 ctgggttgaa ttttggttcc gttcaacttt cttctggaaa ttcatctaat atccagcaac 2701 ttgcacctat aaatatgcaa ggccaagttg ttcctactaa ccagattcaa agtggaatga 2761 atactggaca cattggcaca actcagcaca tgatacaaca acagacttta cagagtacat 2821 caactcagag tcaacaaaat gtactgagtg ggcacagtca gcaaacatct ctacccagtc 2881 agacacagag cactcttaca gccccactgt ataacactat ggtgatttct cagcctgcag 2941 ccggaagcat ggtccagatt ccatctagta tgccacaaaa cagcacccag agtgctgcag 3001 taactacatt cactcaggac aggcagataa gattttctca aggtcaacaa cttgtgacca 3061 aattagtgac tgctcctgta gcttgtgggg cagtcatggt acctagtact atgcttatgg 3121 gccaggtggt gactgcatat cctacttttg ctacacaaca gcaacagtca cagacattgt 3181 cagtaacgca gcagcagcag cagcagagct cccaggagca gcagctcact tcagttcagc 3241 aaccatctca ggctcagctg acccagccac cgcaacaatt tttacagact tctaggttgc 3301 tccatgggaa tccctcaact caactcattc tctctgctgc atttcctcta caacagagca 3361 ccttccctca gtcacatcac cagcaacatc agtctcagca acagcagcaa ctcagccggc 3421 acaggactga cagcttgccc gacccttcca aggttcaacc acagtagcac acgtgcttcc 3481 tctcttgaca tcaagggagg aaggggatgg cccattaaga gttactcaga tgacctgagg 3541 aaaggaggga aagttccagc agtttcatga gatgcagtat tgagtgttct agttcctgga 3601 attagttggc agagaaaatg ctgcctagtg ctacagatgt acattaaata ccagccagca 3661 ggaggtgatc ataggggcat agccagttct gacagtgttt taggtgcctg gatatttttt 3721 gatggaaaaa gaatatattg ccaaatatta agaagctcag ctatgaaatg acctccaggg 3781 aatcagaaag gcactaatga tgttagtaac ttttagtggt tctgtgcctc ttatcaagtg 3841 ttacagagga cataccactg ccatgtcagg ggtttgctta cagtgatgcc atgaagacag 3901 tccagtagac ttggtagcga ccccctcccc caacccctct cccttttcag ataatgatgg 3961 aacagtaatt actttcagaa tgttgtgtgg gttcaaattc tctatgtaca gatgatgtaa 4021 aaatatgtat atgtctagat aaaaggagag aaagcaaaaa aaaaaaaaaa a //