LOCUS BC041844 3832 bp mRNA linear HTC 09-SEP-2005 DEFINITION Homo sapiens sorting nexin 13, mRNA (cDNA clone IMAGE:5269355), with apparent retained intron. ACCESSION BC041844 VERSION BC041844.1 KEYWORDS HTC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 3832) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 3832) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (23-DEC-2002) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Miklos Palkovits, M.D., Ph.D. cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki Toshiyuki and Piero Carninci (RIKEN) cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Sequencing Group at the Stanford Human Genome Center, Stanford University School of Medicine, Stanford, CA 94305 Web site: http://www-shgc.stanford.edu Contact: (Dickson, Mark) mcd@paxil.stanford.edu Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, R. M. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 74 Row: h Column: 12 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 23238242 This clone has the following problem: retained intron. FEATURES Location/Qualifiers source 1..3832 /db_xref="H-InvDB:HIT000096891" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="IMAGE:5269355" /tissue_type="Testis" /clone_lib="NIH_MGC_97" /lab_host="DH10B" /note="Vector: pBluescriptR" BASE COUNT 1240 a 692 c 814 g 1086 t ORIGIN 1 gggggggggc cagcgaagcc gagtaaaacc gccgcccggg agaagactga aggagcagtt 61 gccgccgttg gcggcggccc gagcagtttt cgctgctgct acggctgttg ccatgaggcg 121 aggctaggga ggacctcact tccccggggt gtaataatgt taactgaggc cagtctatcc 181 atatggggat ggggaagcct tggcattgtc ctttttctga taacctttgg accctttgta 241 atattttatt tgacatttta tatcctctgc tttgtgggtg ggggtttagt ggttactctc 301 ctgtttggaa aaacaaactc agagaagtac ctagaacagt gtgaacactc atttcttcct 361 ccaacatcac ctggggttcc taagtgctta gaagaaatga aacgggaagc caggactatt 421 aagattgata gaagattgac gggtgccaat ataattgatg aacctctcca gcaagttatc 481 cagttttcct tgagggatta tgtccagtat tggtattata cactaagcga tgatgaatct 541 tttcttcttg aaattaggca gactcttcaa aacgcactca ttcagtttgc tactagatgc 601 tggggataca gcagtgaata aaacaaagtc cctgctcagt ggagtgaaat gaaatacctg 661 tgacagtgtt ttgaaaattg tgaaggaatt tagaaattta agtttttatg ccatccaaca 721 cccataattt tactgatgag gaagctaagg tccagaaagg tcaaaagaaa tagactggca 781 accttatttt actacacgca ttgtagatga ctttggcaca cacttacgag tattcagaaa 841 ggctcaacag aaaataacag agaaagatga tcaagtgaaa ggtacagcag aagatcttgt 901 agataccttc tttgaagttg aagttgaaat ggagaaggag gtttgccgtg atctagtgtg 961 cacttccccc aaagatgaag aaggattcct aagggatttg tgtgaggtct tactatattt 1021 attgctacct cctggagatt tccagaacaa gatcatgcga tactttgtca gggaaatcct 1081 tgcacgagga attcttcttc cattaataaa tcaactcagt gatcctgatt atattaatca 1141 gtatgtcata tggatgatcc gtgattctaa ctgcaactat gaggccttta tgaacattat 1201 taaattgagt gacaatattg gagagctaga agcagtcaga gataaggcag cagaagaatt 1261 acagtatctt agatctctag atacagctgg tgatgatatc aacactatca aaaatcaaat 1321 aaatagctta ctattcgtaa agaaggtatg tgactcaaga atacagcgat tgcagtcagg 1381 caaagaaata aatactgtga aacttgcagc aaactttggg aaactttgca cagtccccct 1441 ggacagcatt cttgtagaca atgttgcact acaatttttt atggattaca tgcagcaaac 1501 tggaggtcaa gcacatctat tcttttggat gacagtggaa ggataccggg ttaccgccca 1561 acagcagcta gaagttttat taagtcgtca gagagatgga aaacatcaaa ccaaccaaac 1621 caaaggtctt ttaagagcag ctgctgttgg aatttatgaa cagtatttat cagaaaaggc 1681 atctccaaga gttactgttg atgactattt agtagcaaaa ttagcagata ctttgaatca 1741 tgaagatcca acccctgaaa tctttgatga cattcaaaga aaggtatatg aattgatgct 1801 acgagatgaa agattttatc cttccttcag acagaatgca ctttatgtgc gcatgttagc 1861 tgagcttgac atgttaaaag atcctagttt cagaggatcc gatgatgggg atggagaatc 1921 ttttaatggg tctcctacag gaagcataaa tttgtcttta gatgaccttt caaatgtttc 1981 ttctgatgac tcagtacaac ttcatgccta catttcagac acaggcgttt gtaatgatca 2041 tggcaagaca tatgcattat atgccatcac tgtacaccgg cgcaacctaa acagtgagga 2101 gatgtggaaa acctatcgtc gttatagtga cttccatgac ttccacatga gaatcactga 2161 acagtttgaa agtctctcaa gcatattgaa acttcctgga aaaaagactt ttaataatat 2221 ggatagagat tttttagaaa agagaaaaaa ggatctaaat gcatatttgc agttactgtt 2281 agctcctgaa atgatgaagg catcccccgc tttagctcac tatgtgtatg atttccttga 2341 gaacaaagcc tacagtaaag gaaaagggga ttttgctcgc aagatggaca cttttgtaaa 2401 tccacttcgc aattcaatga ggaatgtttc aaatgcagtt aaatcccttc ctgatagctt 2461 ggcagaggga atgactaaaa tgtcagacaa catgggcaaa atgtcagaaa gattaggtca 2521 agacataaag caatcatttt ttaaggtgcc tcctttaatt cctaagactg attcagaccc 2581 tgaacatcgc cgagtttcgg ctcaacttga cgataatgtg gatgacaata ttccacttag 2641 ggtaatgctg cttctcatgg atgaagtatt cgacttaaaa gaaagaaatc agtggttgcg 2701 aaggaatatc aaaaacctac ttcaacagct tattagagct acatatggcg atactattaa 2761 tagaaaaata gttgaccatg ttgactggat gacttcacct gaacaagtag ccgactcagt 2821 gaaacgtttc agagatgcat tttggccaaa tggcatttta gcagaggctg ttccatgcag 2881 agataaaagt attcgaatgg gaacaagagt agcaggaaaa acgaaattac ttgcaattat 2941 gccagatgaa ctgaagcaca ttattggggc tgagacaaca cggaaaggta ttcttcgtgt 3001 ttttgaaatg tttcagcaca accaattaaa taggagaatg gtttatgtct tcttggaagg 3061 ctttttagaa accttatttc cacagtataa attccgtgaa cttttcaaca aactgcattc 3121 acggtcaaag cagatgcaga aatataaaca gaaacttcaa actactcaag cgccttcttt 3181 gcagaaaagg tgacactcca ctctatgaag ctggtgttca ttttgtccag gactaatggt 3241 atggacagat cttctggggc ttaactcaaa tactgttgtg tctgcaccag tcttttagtg 3301 tctcaaaata gattattaat acatccataa gtctgtggtt cttctcattc tcatctataa 3361 tccaccacta ccaagagaga tttctgtgtc ttaaatgatt tggtgcatat tttgcaacat 3421 tgagagaaaa ctgcccccat ctcaagcaag aatggcgttg gtttcttcca tttcaaacta 3481 atcagcattc tccagcaatg acaaagtgcc agagtgtata tatgaaagct aaggaaagca 3541 caaaacaatg gttcagagat aaattggcta atttgtttaa cagttggaga ctgtgcaatg 3601 tacgacttgg aggagtttgt ttggcataat gattttgtag gtctgtcagc attttgatat 3661 attgtggatt agccaggtga atgatccttg aaacatctct ttcaggtctg gagaaagaga 3721 cagaatgccc ttaaagtgtg aaataacctt atacctgaat tacagttttg tgatataaaa 3781 taaagctgag tataaaataa aaccaatcaa acacagaaaa aaaaaaaaaa aa //