LOCUS BC041604 1337 bp mRNA linear HUM 24-JUL-2006
DEFINITION Homo sapiens CDC42 small effector 1, mRNA (cDNA clone MGC:52167
IMAGE:5473010), complete cds.
ACCESSION BC041604
VERSION BC041604.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1337)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1337)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (20-DEC-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 44 Row: k Column: 20
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 12965169.
FEATURES Location/Qualifiers
source 1..1337
/db_xref="H-InvDB:HIT000052570"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:52167 IMAGE:5473010"
/tissue_type="Skin, melanoma, amelanotic"
/clone_lib="NIH_MGC_41"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1337
/gene="CDC42SE1"
/gene_synonym="SCIP1"
/gene_synonym="SPEC1"
/db_xref="GeneID:56882"
/db_xref="HGNC:HGNC:17719"
CDS 397..636
/gene="CDC42SE1"
/gene_synonym="SCIP1"
/gene_synonym="SPEC1"
/codon_start=1
/product="CDC42 small effector 1"
/protein_id="AAH41604.1"
/db_xref="GeneID:56882"
/db_xref="HGNC:HGNC:17719"
/translation="MSEFWHKLGCCVVEKPQPKKKRRRIDRTMIGEPMNFVHLTHIGS
GEMGAGDGLAMTGAVQEQMRSKGNRDRPWSNSRGL"
BASE COUNT 322 a 353 c 337 g 325 t
ORIGIN
1 cctctgccgg ctcgtactcg gctcccccac ctcgccgcag agctagcccg ggaagcccac
61 actggcggcc acggagcaga gtccctcacc cccaccagct gtagctgaac gtctggatgg
121 tggagaagag cagggttccg agtctgagga agacataacc ttgtgcctgc ctgcccacct
181 ctctctctgg tcctgttcat ctctcaggct ctgagacact gaccttcact gctcagttaa
241 aggttccagg gattccactt tgtctggacc catccagctg agtgaaccca gggtggtggt
301 gtatctgggg agagtgagga gtgggttgtc caaacaccag ggaaagagcc ctttggggcc
361 tcagacagag gagtgaagct ggaaccatca gggaacatga gtgaattttg gcacaaactg
421 ggctgctgtg tggtagagaa accccagccg aagaagaaga gaagacggat tgaccggacc
481 atgattgggg aaccaatgaa ttttgttcac ctgactcaca ttggctcagg ggagatgggg
541 gccggagatg gacttgccat gacaggtgca gttcaggagc agatgagatc caagggaaac
601 cgagataggc catggagcaa ttctaggggc ttatagctcc aataatggaa tggttctgcc
661 atcttgaaac ccccattctg tttccagccc agaagaaatg ctgcccctac cagatccctc
721 cttgaaccag tgatctaagg acccctcttt tccctatctg cctaacagtg cctcacaagg
781 cttgggggct ggactccctc tactccctct ggccatagcc cctcctggag atggggtcaa
841 ggcagcagga ctgatcaagt gactactggt tagccagagg agctcagctg aagccctgga
901 aaccctcagg tctgagatag gagttctcta ggaacctgga atgagttcct gtctcctgaa
961 tgatggtctg ggtgccacct gtttttaaac tcttaaacct ggaactcctt aaatggggta
1021 ggtgggtgag attatcaaag ctgaagctgg ctttgctgag aagctcccta cctccctgcc
1081 cttctcctcc ttcctgctgg aatgaactaa agcagatgtc aagcaggggc tggtgggggt
1141 gcctactccc ttttccactc tatctttaga tttcaaacct taggcttaca gcccctcaat
1201 atctctctgc taacaccagt gtctctttct agttaggcct ctaatcttct gtttctgttt
1261 accagcttcc cagcaacttt ccttttttaa aatattaaaa atttaattca ggttctctta
1321 aaaaaaaaaa aaaaaaa
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