LOCUS BC041592 3194 bp mRNA linear HUM 25-JAN-2007
DEFINITION Homo sapiens peptidyl arginine deiminase, type III, mRNA (cDNA
clone MGC:52193 IMAGE:5431445), complete cds.
ACCESSION BC041592
VERSION BC041592.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3194)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3194)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (20-DEC-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 44 Row: i Column: 12
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 7706446.
FEATURES Location/Qualifiers
source 1..3194
/db_xref="H-InvDB:HIT000096780"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:52193 IMAGE:5431445"
/tissue_type="Brain, astrocytoma, grade IV"
/clone_lib="NIH_MGC_98"
/lab_host="DH10B"
/note="Vector: pOTB7"
gene 1..3194
/gene="PADI3"
/gene_synonym="PAD3"
/gene_synonym="PDI3"
/db_xref="GeneID:51702"
/db_xref="HGNC:HGNC:18337"
/db_xref="MIM:606755"
CDS 27..2021
/gene="PADI3"
/gene_synonym="PAD3"
/gene_synonym="PDI3"
/codon_start=1
/product="peptidyl arginine deiminase, type III"
/protein_id="AAH41592.1"
/db_xref="GeneID:51702"
/db_xref="HGNC:HGNC:18337"
/db_xref="MIM:606755"
/translation="MSLQRIVRVSLEHPTSAVCVAGVETLVDIYGSVPEGTEMFEVYG
TPGVDIYISPNMERGRERADTRRWRFDATLEIIVVMNSPSNDLNDSHVQISYHSSHEP
LPLAYAVLYLTCVDISLDCDLNCEGRQDRNFVDKRQWVWGPSGYGGILLVNCDRDDPS
CDVQDNCDQHVHCLQDLEDMSVMVLRTQGPAALFDDHKLVLHTSSYDAKRAQVFHICG
PEDVCEAYRHVLGQDKVSYEVPRLHGDEERFFVEGLSFPDAGFTGLISFHVTLLDDSN
EDFSASPIFTDTVVFRVAPWIMTPSTLPPLEVYVCRVRNNTCFVDAVAELARKAGCKL
TICPQAENRNDRWIQDEMELGYVQAPHKTLPVVFDSPRNGELQDFPYKRILGPDFGYV
TREPRDRSVSGLDSFGNLEVSPPVVANGKEYPLGRILIGGNLPGSSGRRVTQVVRDFL
HAQKVQPPVELFVDWLAVGHVDEFLSFVPAPDGKGFRMLLASPGACFKLFQEKQKCGH
GRALLFQGVVDDEQVKTISINQVLSNKDLINYNKFVQSCIDWNREVLKRELGLAECDI
IDIPQLFKTERKKATAFFPDLVNMLVLGKHLGIPKPFGPIINGCCCLEEKVRSLLEPL
GLHCTFIDDFTPYHMLHGEVHCGTNVCRKPFSFKWWNMVP"
BASE COUNT 702 a 879 c 902 g 711 t
ORIGIN
1 cggccacagc taagtccaac accagcatgt cgctgcagag aatcgtgcgt gtgtccctgg
61 agcatcccac cagcgcggtg tgtgtggctg gcgtggagac cctcgtggac atttatgggt
121 cagtgcctga gggcacagaa atgtttgagg tctatgggac gcctggcgtg gacatctaca
181 tctctcccaa catggagagg ggccgggagc gtgcagacac caggcggtgg cgctttgacg
241 cgactttgga gatcatcgtg gtcatgaact cccccagcaa tgacctcaac gacagccatg
301 ttcagatttc ctaccactcc agccatgagc ctctgcccct ggcctatgcg gtgctctacc
361 tcacctgtgt tgacatctct ctggattgcg acctgaactg tgagggaagg caggacagga
421 actttgtaga caagcggcag tgggtctggg ggcccagtgg gtatggcggc atcttgctgg
481 tgaactgtga ccgtgatgat ccgagctgtg atgtccagga caattgtgac cagcacgtgc
541 actgcctgca agacctggaa gacatgtctg tcatggtcct gcggacgcag ggccctgcag
601 ccctctttga tgaccacaaa cttgtcctcc atacctccag ctatgatgcc aaacgggcac
661 aggtcttcca catctgcggt cctgaggatg tgtgtgaggc ctataggcat gtgctgggcc
721 aagataaggt gtcctatgag gtaccccgct tgcatgggga tgaggagcgc ttcttcgtgg
781 aaggcctgtc cttccctgat gccggcttca caggactcat ctccttccat gtcactctgc
841 tggacgactc caacgaggat ttctcggcat cccctatctt cactgacact gtggtgttcc
901 gagtggcacc ctggatcatg acgcccagca ctctgccacc cctagaggtg tatgtgtgcc
961 gtgtgaggaa caacacgtgt tttgtggatg cggtggcaga gctggccagg aaggccggct
1021 gcaagctgac catctgccca caggccgaga accgcaacga ccgctggatc caggatgaga
1081 tggagctggg ctacgttcag gcgccgcaca agaccctccc ggtggtcttt gactccccaa
1141 ggaatgggga actgcaggat ttcccttaca aaagaatcct gggtccagat tttggttacg
1201 tgactcggga accacgcgac aggtctgtga gtggcctgga ctcctttggg aacctggagg
1261 tcagccctcc agtggtggcc aatgggaaag agtaccccct ggggaggatc ctcattgggg
1321 gcaacctgcc tgggtcaagt ggccgcaggg tcacccaggt ggtgcgggac ttcctccatg
1381 cccagaaggt gcagcccccc gtggagctct ttgtggactg gttggccgtg ggccatgtgg
1441 atgagtttct gagctttgtc cctgcccccg atgggaaggg cttccggatg ctcctggcca
1501 gccctggggc ctgcttcaag ctcttccagg aaaagcagaa gtgtggccac gggagggccc
1561 tcctgttcca gggggttgtt gatgatgagc aggtcaagac catctccatc aaccaggtgc
1621 tctccaataa agacctcatc aactacaata agtttgtgca gagctgcatc gactggaacc
1681 gtgaggtgct gaagcgggag ctgggcctgg cagagtgtga catcattgac atcccacagc
1741 tcttcaagac cgagaggaaa aaagcaacgg ccttcttccc tgacttggtg aacatgctgg
1801 tgctggggaa gcacctgggc atccccaagc cctttgggcc catcatcaat ggctgctgct
1861 gcctggagga gaaggtgcgg tccctgctgg agccgctggg cctccactgc accttcattg
1921 atgacttcac tccataccac atgctgcatg gggaggtgca ctgtggcacc aatgtgtgca
1981 gaaagccctt ctctttcaag tggtggaaca tggtgccctg agacagctcc cacccaccat
2041 cctgtccccc tggggcgggc attggcccag gtggtggaga cagagacagg cccctgaacg
2101 ataagcacca agagacccca aggctccaga tggaacactg agggtgaccg tccctctcag
2161 aagccttttc cctggaagtg tccatgcctc acctgcaacc catgtggttc tcagacttga
2221 atcttctcgg ccccccaaaa agaaggacct catttcttat agcctctcct gtgattcaac
2281 acaacccatg gagatgtccc cttctcactc tgaaatcatc catttgggga caaatccaca
2341 ttggggtcta gaaacatcca cgtatctcat cagccatctt gtcctgtgca tcctaacaga
2401 ggaaggatcc atgattctgc tttggtccaa ttgcttcctc tctgcagagg aacaacccta
2461 aaaccagacc actccacgca ggacaggcag gagagattct tcctaaagcc tcccccataa
2521 aaagggagct gtggatccac ttagatcagg gcggaaccat ctttcacccg gccaagctcc
2581 tgcccagatg ttgaccctca cccagcgtga gctgtcacat agtaggagct tctagatgca
2641 tgtggaagca atgagagttg tcccttagcc ttataaactc cccatgatct gacatgcaga
2701 aatccagcct tgtccagaat cctcctggaa tttcttggag acgaaagtat ctgggggatt
2761 gttgggtact agggagactg ggtacaaggg tgaaaagtag ttcccataat acacatggtt
2821 gactatggtg atccaccttg tgatggttaa tattaggtgt ctggagaagg ttgcttcatt
2881 ggccctggga cttctctctg caggaggaga gaccgctgcc tctcctctgg attggtctca
2941 ggctctctgt tggcctttgg tcagcgtttc cacatcctgc tctgctgcag gagagggggc
3001 taaggggctg gatccaccaa ggcagctcac agcgggaaaa ctctgggact gaaccactga
3061 attcagggga tgggggtggg ggggcggttc tcgaggtgtg tgccagctac acgtgtgttc
3121 tgtatgggtc cagctgcgtt tccatcactc gctaataaat caacagaaac acaaaaaaaa
3181 aaaaaaaaaa aaaa
//