LOCUS BC041564 1698 bp mRNA linear HUM 17-JUL-2007 DEFINITION Homo sapiens paired-like homeobox 2a, mRNA (cDNA clone MGC:52227 IMAGE:5923445), complete cds. ACCESSION BC041564 VERSION BC041564.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1698) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 1698) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2002) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: ATCC cDNA Library Preparation: Rubin Laboratory cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: National Institutes of Health Intramural Sequencing Center (NISC), Gaithersburg, Maryland; Web site: http://www.nisc.nih.gov/ Contact: nisc_mgc@nhgri.nih.gov Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B., Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S., Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P., Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R., Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C., McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W., Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L., Young,A., Zhang,L.-H. and Green,E.D. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAL Plate: 44 Row: o Column: 13 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 46249381. FEATURES Location/Qualifiers source 1..1698 /db_xref="H-InvDB:HIT000052563" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:52227 IMAGE:5923445" /tissue_type="Brain, neuroblastoma" /clone_lib="NIH_MGC_47" /lab_host="DH10B-R" /note="Vector: pOTB7" gene 1..1698 /gene="PHOX2A" /gene_synonym="CFEOM2" /gene_synonym="NCAM2" /gene_synonym="PMX2A" /db_xref="GeneID:401" /db_xref="HGNC:HGNC:691" /db_xref="MIM:602753" CDS 155..1009 /gene="PHOX2A" /gene_synonym="CFEOM2" /gene_synonym="NCAM2" /gene_synonym="PMX2A" /codon_start=1 /product="paired-like homeobox 2a" /protein_id="AAH41564.1" /db_xref="GeneID:401" /db_xref="HGNC:HGNC:691" /db_xref="MIM:602753" /translation="MDYSYLNSYDSCVAAMEASAYGDFGACSQPGGFQYSPLRPAFPA AGPPCPALGSSNCALGALRDHQPAPYSAVPYKFFPEPSGLHEKRKQRRIRTTFTSAQL KELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFRKQERAASAKGAAGA AGAKKGEARCSSEDDDSKESTCSPTPDSTASLPPPPAPGLASPRLSPSPLPVALGSGP GPGPGPQPLKGALWAGVAGGGGGGPGAGAAELLKAWQPAESGPGPFSGVLSSFHRKPG PALKTNLF" BASE COUNT 285 a 633 c 485 g 295 t ORIGIN 1 ctgagtgcgg ccgcgacggg gcgggcggac tctcgggcgc tcagagctgg cctcgggtcc 61 tcggagcctg gcgctcgaac ctcccttccg acctccaccc ggaccccgac cccgacccgg 121 cctggcccgg cccccgcccc cgccccccgg gccgatggac tactcctacc tcaattcgta 181 cgactcgtgc gtggcggcca tggaggcgtc cgcctacggc gactttggcg cctgcagcca 241 gcccggcggc ttccaataca gccccctgcg gcccgctttc cccgcggcag ggccgccctg 301 ccccgcgctc ggctcctcca actgcgcact tggcgcccta cgcgaccacc agcccgcgcc 361 ctactcggca gtgccctaca agttcttccc agagccatcc ggcctgcacg agaagcgcaa 421 gcagcggcgc atccgcacca cgttcaccag cgcgcagctc aaggagctgg agcgcgtttt 481 cgctgagacc cactaccccg acatttacac gcgtgaggag ctggcgctca agatcgacct 541 cactgaggct cgcgtgcagg tctggttcca gaaccgccgg gccaagttcc gcaaacagga 601 gcgcgcggcc agcgccaagg gcgcggcggg cgcggcgggc gccaaaaagg gcgaggcgcg 661 ctgctcctcc gaggacgacg attccaagga gtccacgtgc agccccacgc ccgatagcac 721 cgcctcgctg ccgccgccgc ctgcgcccgg cctggccagc ccgcgcctga gccccagccc 781 gctgcccgtc gcactgggct ccgggccggg acctgggccg gggccacagc cgctcaaggg 841 cgcactgtgg gccggtgtgg cgggcggtgg gggcggcggg cctggcgcgg gagcggccga 901 actacttaag gcttggcagc cggcggagtc cggccccggg cccttctccg gggttctgtc 961 ctcctttcac cggaagcccg gccccgccct gaagaccaat ctcttctagc tgccggcctc 1021 tggaggctcc gagcctgccc ccagagacgt ccctgcccct ccaggacctg acagcccctc 1081 ccatcctggc cacccgcctg gaagtcccca tccgtctcca ctccctactg tctcacccct 1141 cggtgtgtcc tccccaactt tggagaccaa gtcagggcca ctctcgtcct cacccaccct 1201 ctaccagcag agcggagttc tttataccgg gacctcctcc aggagaaccc cggagctcct 1261 tctagcttgg ccttctttgg atgcggtatc acatgaggcc tgtccctaac agtgccctca 1321 aagtgaaggt cctcaaggag gatcggcaca gcccccttcc ctggctctgc agcggctggg 1381 tcacccctta cgctggtgat caggaaagcc cgctgcccca cccctcgggc ccacccgtac 1441 agaggctggt ggtcgccggg ataattaatg accaccgcca attcatccct cacgtgtctc 1501 ctctcttccc tagcccgtct ggcacagagg gtggacctgt tagaggagtg gaggggctgc 1561 ctggggaatg ggacagaggg attctctttc cctaattttt ttggttgtcc tttttctttg 1621 aaaaacttgt aatttattga agttttactc aatccaaata aaacttaatt tattgaagac 1681 aaaaaaaaaa aaaaaaaa //