LOCUS BC041409 4004 bp mRNA linear HUM 17-JUL-2006
DEFINITION Homo sapiens basic helix-loop-helix domain containing, class B, 9,
mRNA (cDNA clone MGC:44058 IMAGE:5284828), complete cds.
ACCESSION BC041409
VERSION BC041409.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4004)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 4004)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (16-DEC-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Sep 16, 2003 this sequence version replaced BC041409.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 75 Row: n Column: 11
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 39930462.
FEATURES Location/Qualifiers
source 1..4004
/db_xref="H-InvDB:HIT000096680"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:44058 IMAGE:5284828"
/tissue_type="Brain, hippocampus"
/clone_lib="NIH_MGC_95"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..4004
/gene="BHLHB9"
/gene_synonym="KIAA1701"
/gene_synonym="p60TRP"
/db_xref="GeneID:80823"
/db_xref="HGNC:HGNC:29353"
CDS 529..2172
/gene="BHLHB9"
/gene_synonym="KIAA1701"
/gene_synonym="p60TRP"
/codon_start=1
/product="basic helix-loop-helix domain containing, class
B, 9"
/protein_id="AAH41409.1"
/db_xref="GeneID:80823"
/db_xref="HGNC:HGNC:29353"
/translation="MAGTKNKTRAQAKTEKKAAIQAKAGAEREATGVVRPVAKTRAKA
KAKTGSKTDAVAEMKAVSKNKVVAETKEGALSEPKTLGKAMGDFTPKAGNESTSSTCK
NEAGTDAWFWAGEEATINSWFWNGEEAGNSFSTKNDKPEIGAQVCAEELEPAAGADCK
PRSGAEEEEEENVIGNWFWEGDDTSFDPNPKPVSRIVKPQPVYEINEKNRPKDWSEVT
IWPNAPAVTPAVLGFRSQAPSEASPPSYIVLASAEENACSLPVATACRPSRNTRSCSQ
PIPECRFDSDPCIQTIDEIRRQIRIREVNGIKPFACPCKMECYMDSEEFEKLVSLLKS
TTDPLIHKIARIAMGVHNVHPFAQEFINEVGVVTLIESLLSFPSPEMRKKTVITLNPP
SGDERQRKIELHVKHMCKETMSFPLNSPGQQSGLKILGQLTTDFVHHYIVANYFSELF
HLLSSGNCKTRNLVLKLLLNMSENPTAARDMINMKALAALKLIFNQKEAKANLVSGVA
IFINIKEHIRKGSIVVVDHLSYNTLMAIFREVKEIIETM"
BASE COUNT 1187 a 769 c 904 g 1144 t
ORIGIN
1 gagaggagtg ttttcttgca tccagaaaag acctgagagg cggacgacac ctgtgctccg
61 cagagcagaa cgtgggagga acggcgggat gttaaggagc tcaagaagca gagagtctac
121 ctgcccgacg cgttcgtgga gaggagcagc ggttgctgtt ggaggaggtg ggtgcaagga
181 cggcagatgg catccctgag aggtggtgac tgagactaga tgcgggtgca ggtccatctc
241 cactggtggc tgtggtggct ttggattgtt ggaagaccat caccttcagc aggtctgcac
301 ttgggaacaa tcattctccc ccagcccgag cgtgcctctg ccctctgtat cattgacaga
361 ggctgtatgt ttggaaagag aactttgtga ctgcagaact gacagttgac tctaattctt
421 gctaccaagt ttttccccga cccagtgaaa gagtgttaag acttcgacct aggacacatt
481 gagaaccaag gccaagactg gacagggcca tataactggg cttcaaccat ggctgggact
541 aagaataaga caagagccca ggccaaaact gaaaaaaagg ctgctataca agctaaagct
601 ggagcagaga gggaggctac tggtgttgtt aggcctgtag ccaagaccag ggccaaagca
661 aaagccaaga cagggtctaa gacagatgca gtagcagaga tgaaggcagt gtctaagaac
721 aaggttgttg ctgagacgaa ggaaggagct ctgtcagagc ctaagactct gggcaaagcc
781 atgggagatt tcactcccaa ggctgggaat gagtccacca gctccacatg taaaaatgag
841 gctggtactg atgcctggtt ctgggctggg gaagaggcca ctatcaattc ctggttctgg
901 aatggagaag aggctggtaa tagtttcagc actaagaatg ataaacctga aattggtgcc
961 caggtctgtg ctgaggagtt ggaacctgcg gctggggccg attgcaaacc taggtcaggg
1021 gctgaggagg aggaggaaga gaatgttatt gggaactggt tttgggaagg agatgatact
1081 agttttgacc ctaatcctaa acctgtgagc aggatagtta agcctcagcc tgtgtatgaa
1141 attaatgaaa aaaataggcc caaggactgg tctgaggtaa ctatctggcc caatgcccct
1201 gctgtaactc cagctgtgtt aggatttaga tcacaggcac catctgaggc aagccctcct
1261 tcatatattg ttctggcctc cgctgaagaa aatgcctgtt ctttgcctgt ggcaacagct
1321 tgccgccctt ctaggaacac tcgctcatgc tcacagccta tccctgagtg tcgttttgat
1381 tctgacccct gcatccagac catagatgag attagacgtc aaatcaggat cagggaggta
1441 aatgggatta agccatttgc ttgtccttgc aaaatggaat gctatatgga ttctgaggaa
1501 tttgaaaaac ttgttagctt acttaagtca actactgatc ctcttattca taaaatagca
1561 cggattgcaa tgggtgtcca taatgttcac ccatttgccc aagagtttat taacgaagta
1621 ggtgtagtga cacttattga aagcttgctc agttttcctt cccctgaaat gagaaaaaag
1681 actgtaatta ctctgaatcc tccttctggg gatgaaagac aacgcaaaat tgaattacat
1741 gttaagcata tgtgtaaaga aaccatgtca tttcctttga actcaccggg acagcaatct
1801 ggattaaaga tactaggaca actgactact gattttgtcc atcactacat tgttgccaat
1861 tacttttcag agcttttcca tttgctgtcc tcaggaaatt gcaaaaccag aaatcttgtt
1921 ttgaaactac ttttaaatat gtctgaaaat ccaactgcag ccagagacat gatcaatatg
1981 aaggcattgg cagcattaaa actcatcttt aaccagaaag aggcaaaagc caatcttgtt
2041 agtggtgtgg ccatatttat taacataaag gagcatatca gaaaaggctc aattgtagtt
2101 gttgatcact tgagttataa tacactcatg gccattttca gggaagttaa agagattatt
2161 gaaacaatgt aaaatgagcc agagatagaa cattttaagc catcttcaaa ctctagcagg
2221 ctgtacatta cagtgtacac attatacact gcatctttaa cacagagtca cctgtgacag
2281 gctctaggtt tgagctagac tattttgggg gtatcaaatg aatattatac cttgggctga
2341 aaatgtttga tttttatctt gtctagattg gcatattttt aacattttac ttaagatagc
2401 aaaccagttc gttttaagta agctaacttg ttcattagta tctgtggctt aaaatggcaa
2461 aaaagaaaat atccttgagt ttgtaatcta gttacagaag taaggcatac acacacacaa
2521 agataacagt acctagagag agagtgtgtg tgagtgtgcg tgtctctgtg tgtgcacgtg
2581 cacgctcatg gccaaatgtg cgcactctac ataaaggagg caggagttcc tataggctat
2641 ttaatgtaag agaaactatt tttctcctgt tccagctgta tcagatactc gttccgcaac
2701 acagaaatga ctcagaatct cagacaaaat gtattatttg ttcaatttta attttgctac
2761 tacattcata actcttaaat tgttaggctg tttcatttac atcaaagtta tctcacaaaa
2821 gagaaggcag gaaacgtttt gtgagtgcct attctatgtc aaacactgtg ttggcaccat
2881 attttacaag tttttttcct cttctcacag tgatcttgtg agttagttac ttatattttt
2941 attagaactc attattctgg gtaccctcca atgagaatta gagaggttaa ataccttttc
3001 ctagattccc acagcaggaa ggtggcatag ctgttttgtc tgacaccaga acccatctca
3061 ccacactgct ttacagtctt cctgaaggac attttgaggt gggggggcct tcaaagctca
3121 gagactggtt tgaatggttt aattttgcaa tggatcatgt ccatgccagg tgttacaatt
3181 cttaacttcc tccaaattcg tgtgtccatt agacatttgg ctacatctgg ctggaggtca
3241 ggagaaaatt ctgaggtaaa tagatggatt ttatctggca gtgtcgaaaa tagtaggagc
3301 ctaaaacttt gttcaatgag taagatgtag atttggagtc atcagcaggg gaaacttgtt
3361 agatgtcctt tgtatctttt tctatccatt tgtatttttt ctttcccaaa gagctgaaat
3421 cattttatac cctgaattta aaaggtaatt gcttttttcc tccttgcgaa atcatacctt
3481 aatttttttt tttttttttt taccatttat gatttattct cctatgtgtc atatgaaagg
3541 ccaaggggct ttatctttta ctagtaggca agcctgggca tttctgcatt tgtgccagct
3601 aacactacaa aatagactta attagagaaa tttagaccca gaattgcagc ttcaacaaca
3661 caaaacagga aagctagaag aggttgctgt gtcaacctac aagatagtga ttcttggaag
3721 ttggtatgga ccagaaagca ttcccaggac atttaggcta tggctgagtt ctctaagact
3781 cagggtggga attataatcc ctggtctaag ctgatatgaa agtttctatg tgtgaaaata
3841 tggagttata tgctttgaga ttttctgcca gttaaactaa aacaagatca tactgtaaat
3901 gtttgtaact tgcttccccc cactgtatac tgtaaacatc tttgcatgtc aataaatatg
3961 cctctacaac ataaaaaaaa aaaaaaataa aaaaaaaaaa aaaa
//