LOCUS BC041374 3086 bp mRNA linear HUM 06-OCT-2005
DEFINITION Homo sapiens leucine rich repeat containing 4C, mRNA (cDNA clone
MGC:43884 IMAGE:5274422), complete cds.
ACCESSION BC041374
VERSION BC041374.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3086)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3086)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (16-DEC-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Sep 16, 2003 this sequence version replaced BC041374.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 75 Row: f Column: 5
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 51317372.
FEATURES Location/Qualifiers
source 1..3086
/db_xref="H-InvDB:HIT000052549"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:43884 IMAGE:5274422"
/tissue_type="Brain, hippocampus"
/clone_lib="NIH_MGC_95"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..3086
/gene="LRRC4C"
/gene_synonym="KIAA1580"
/gene_synonym="NGL-1"
/gene_synonym="NGL1"
/db_xref="GeneID:57689"
/db_xref="HGNC:HGNC:29317"
/db_xref="IMGT/GENE-DB:29317"
/db_xref="MIM:608817"
CDS 1034..2956
/gene="LRRC4C"
/gene_synonym="KIAA1580"
/gene_synonym="NGL-1"
/gene_synonym="NGL1"
/codon_start=1
/product="LRRC4C protein"
/protein_id="AAH41374.3"
/db_xref="GeneID:57689"
/db_xref="HGNC:HGNC:29317"
/db_xref="IMGT/GENE-DB:29317"
/db_xref="MIM:608817"
/translation="MLNKMTLHPQQIMIGPRFNRALFDPLLVVLLALQLLVVAGLVRA
QTCPSVCSCSNQFSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHL
EILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPI
ESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPL
IKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAH
NNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDILWLSWWIKDMAPSNTACCARCNTPP
NLKGRYIGELDQNYFTCYAPVIVEPPADLNVTEGMAAELKCRASTSLTSVSWITPNGT
VMTHGAYKVRIAVLSDGTLNFTNVTVQDTGMYTCMVSNSVGNTTASATLNVTAATTTP
FSYFSTVTVETMEPSQDEARTTDNNVGPTPVVDWETTNVTTSLTPQSTRSTEKTFTIP
VTDINSGIPGIDEVMKTTKIIIGCFVAITLMAAVMLVIFYKMRKQHHRQNHHAPTRTV
EIINVDDEITGDTPMESHLPMPAIEHEHLNHYNSYKSPFNHTTTVNTINSIHSSVHEP
LLIRMNSKDNVQETQI"
BASE COUNT 927 a 673 c 696 g 790 t
ORIGIN
1 ggagtttgga ggggagaggg gaaggtggct ggccgggtgg ctgaaatcaa aaattcaatt
61 gcgcactggg ttgtgatgag aaatctaatc agatctttgg cgaaggggcc ggccggaagg
121 atggagagtg ggggggaagt tgctccccaa attcttcgaa ggggaggctg gggagaggaa
181 ttgaccatgt aaaaggagac tttttttttt ggtggtggtg gctgttgggt gccttgcaaa
241 aatgaaggat gcaggacgca gctttctcct ggaaccgaac gcaatggata aactgattgt
301 gcaagagaga aggaagaacg aagctttttc ttgtgagccc tggatcttaa cacaaatgtg
361 tatatgtgca cacagggagc attcaagaat gaaataaacc agagttagac ccgcgggggt
421 tggtgtgttc tgacataaat aaataatctt aaagcagctg ttcccctccc ccccccaaaa
481 aaaaggatga ttggaaatga agaaccgagg attcacaaag aaaaaagtat gttcattttt
541 ctctataaag gagaaagtga gccaaggaga tatttttgga atgaaaagtt tggggctttt
601 ttagtaaagt aaagaactgg tgtggtggtg ttttcttttc tttttgaatt tcccacaaga
661 ggagaggaaa ttaataatac atctgcaaag aaatttcaga gaagaaaagt tgaccgcggc
721 agattgaggc attgattggg ggagagaaac cagcagagca cagttggatt tgtgcctatg
781 ttgactaaaa ttgacggata attgcagttg gatttttctt catcaacctc cttttttttt
841 aaatttttat tccttttggt atcaagatca tgcgttttct cttgttctta accacctgga
901 tttccatctg gatgttgctg tgatcagtct gaaatacaat tggcaaacgc actgcctact
961 tacagcatag agacccccag tggagagcta gactgtttga attccagaag gaccaacacc
1021 agataaatta tgaatgttga acaagatgac cttacatcca cagcagataa tgataggtcc
1081 taggtttaac agggccctat ttgaccccct gcttgtggtg ctgctggctc ttcaacttct
1141 tgtggtggct ggtctggtgc gggctcagac ctgcccttct gtgtgctcct gcagcaacca
1201 gttcagcaag gtgatttgtg ttcggaaaaa cctgcgtgag gttccggatg gcatctccac
1261 caacacacgg ctgctgaacc tccatgagaa ccaaatccag atcatcaaag tgaacagctt
1321 caagcacttg agacacttgg aaatcctaca gttgagtagg aaccatatca gaaccattga
1381 aattggggct ttcaatggtc tggcgaacct caacactctg gaactctttg acaatcgtct
1441 tactaccatc ccgaatggag cttttgtata cttgtctaaa ctgaaggagc tctggttgcg
1501 aaacaacccc attgaaagca tcccttctta tgcttttaac agaattcctt ctttgcgccg
1561 actagactta ggggaattga aaagactttc atacatctca gaaggtgcct ttgaaggtct
1621 gtccaacttg aggtatttga accttgccat gtgcaacctt cgggaaatcc ctaacctcac
1681 accgctcata aaactagatg agctggatct ttctgggaat catttatctg ccatcaggcc
1741 tggctctttc cagggtttga tgcaccttca aaaactgtgg atgatacagt cccagattca
1801 agtgattgaa cggaatgcct ttgacaacct tcagtcacta gtggagatca acctggcaca
1861 caataatcta acattactgc ctcatgacct cttcactccc ttgcatcatc tagagcggat
1921 acatttacat cacaaccctt ggaactgtaa ctgtgacata ctgtggctca gctggtggat
1981 aaaagacatg gccccgtcga acacagcttg ttgtgcccgg tgtaacactc ctcccaatct
2041 aaaggggagg tacattggag agctcgacca gaattacttc acatgctatg ctccggtgat
2101 tgtggagccc cctgcagacc tcaatgtcac tgaaggcatg gcagctgagc tgaaatgtcg
2161 ggcctccaca tccctgacat ctgtatcttg gattactcca aatggaacag tcatgacaca
2221 tggggcgtac aaagtgcgga tagctgtgct cagtgatggt acgttaaatt tcacaaatgt
2281 aactgtgcaa gatacaggca tgtacacatg tatggtgagt aattccgttg ggaatactac
2341 tgcttcagcc accctgaatg ttactgcagc aaccactact cctttctctt acttttcaac
2401 cgtcacagta gagactatgg aaccgtctca ggatgaggca cggaccacag ataacaatgt
2461 gggtcccact ccagtggtcg actgggagac caccaatgtg accacctctc tcacaccaca
2521 gagcacaagg tcgacagaga aaaccttcac catcccagtg actgatataa acagtgggat
2581 cccaggaatt gatgaggtca tgaagactac caaaatcatc attgggtgtt ttgtggccat
2641 cacactcatg gctgcagtga tgctggtcat tttctacaag atgaggaagc agcaccatcg
2701 gcaaaaccat cacgccccaa caaggactgt tgaaattatt aatgtggatg atgagattac
2761 gggagacaca cccatggaaa gccacctgcc catgcctgct atcgagcatg agcacctaaa
2821 tcactataac tcatacaaat ctcccttcaa ccacacaaca acagttaaca caataaattc
2881 aatacacagt tcagtgcatg aaccgttatt gatccgaatg aactctaaag acaatgtaca
2941 agagactcaa atctaaaaca tttacagagt tacaaaaaac aaacaatcaa aaaaaaagac
3001 agtttattaa aaatgacaca aatgactggg ctaaatctac tgtttcaaaa aagtgtcttt
3061 acaaaaaaac aaaaaaaaaa aaaaaa
//