LOCUS BC041331 3674 bp mRNA linear HUM 28-JUL-2005
DEFINITION Homo sapiens zinc finger protein 335, mRNA (cDNA clone
IMAGE:5285131), partial cds.
ACCESSION BC041331
VERSION BC041331.2
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3674)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3674)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (16-DEC-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 25, 2003 this sequence version replaced BC041331.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 75 Row: o Column: 2
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 40807460.
FEATURES Location/Qualifiers
source 1..3674
/db_xref="H-InvDB:HIT000096617"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:5285131"
/tissue_type="Brain, hippocampus"
/clone_lib="NIH_MGC_95"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene <1..3674
/gene="ZNF335"
/gene_synonym="NIF1"
/db_xref="GeneID:63925"
CDS <1..3367
/gene="ZNF335"
/gene_synonym="NIF1"
/codon_start=2
/product="ZNF335 protein"
/protein_id="AAH41331.2"
/db_xref="GeneID:63925"
/translation="FAAEERGWRPRRCRSQRGTWLRKPRSEVPRPYAPLSGSPPIRWR
RTRWRAAATRPLGLAGPRSPLRAAWVWAPRSRVRRQQRRRGRPGAGRGIDDLEEDSDY
NPAEDEPRGRQLRLQRPTPSTPRPRRRPGRPRKLPRLEISDLPDGVEGEHLVSSQSGQ
SPPEPQDPEAPSSSGPGHLVAMGKVSRTPVEAGVSQSDAENAAPSCPDEHDTLPRRRG
RPSRRFLGKKYRKYYYKSPKPLLRPFLCRICGSRFLSHEDLRFHVNSHEAGDPQLFKC
LQCSYRSRRWSSLKEHMFNHVGSKPYKCDECSYTSVYRKDVIRHAAVHGRDRKKRPDP
TPKLSSFPCPVCGRVYPMQKRLTQHMKTHSTEKPHMCDKCGKSFKKRYTFKMHLLTHI
QAVANRRFKCEFCEFVCEDKKALLNHQLSHVSDKPFKCSFCPYRTFREDFLRSHVAVK
HTGAKPFACEYCHFSTRHKKNLRLHVRCRHASSFEEWGRRHPEEPPSRRRPFFSLQQI
EELKQQHSAAPGPPTSSPGPPEIPPEATTFQSSEAPSLLCSDTLGGATIIYQQGAEES
TAMATQTALDLLLNMSAQRELGGTALQVAVVKSEDVEAGLASPGGQPSPEGATPQVVT
LHVAEPGGGAAAESQLGPPDLPQITLAPGPFGGTGYSVITAPPMEEGTSAPGTPYSEE
PAGEAAQAVVVSDTLKEAGTHYIMATDGTQLHHIELTADGSISFPSPDALASGAKWPL
LQCGGLPRDGPEPPSPAKTHCVGDSQSSASSPPATSKALGLAVPPSPPSAATAASKKF
SCKICAEAFPGRAEMESHKRAHAGPGAFKCPDCPFSARQWPEVRAHMAQHSSLRPHQC
SQCSFASKNKKDLRRHMLTHTKEKPFACHLCGQRFNRNGHLKFHIQRLHSPDGRKSGT
PTARAPTQTPTQTIILNSDDETLATLHTALQSSHGVLGPERLQQALSQEHIIVAQEQT
VTNQEEAAYIQEITTADGQTVQHLVTSDNQVQYIISQDGVEHLLPQEYVVVPEGHHIQ
VQEGQITHIQYEQGAPFLQESQIQYVPVSPGQQLVTQAQLEAAAHSAVTAVADAAMAQ
AQGLFGTDETVPEHIQQLQHQGIEYDVITLADD"
BASE COUNT 815 a 1197 c 1035 g 627 t
ORIGIN
1 cttcgcagcg gaggaaagag gatggcgacc tcgtcgatgc cggagtcaga gaggaacgtg
61 gctacgaaag cctcggagtg aagttcccag accctacgcc ccgctgtcag gcagcccgcc
121 gatcagatgg aggagaacga ggtggagagc agcagcgacg cggcccctgg gcctggccgg
181 cccgaggagc cctctgagag cggcctgggt gtgggcaccc agaagccgtg tccgccgaca
241 gcagcgacgc cgcggccgcc ccggggcagg cagaggcatt gatgacctgg aggaggatag
301 cgactataat ccagctgagg atgagccccg aggccggcag cttcggctcc agcgccccac
361 ccccagtacc ccaaggcccc gaaggagacc tggccggccc cggaagctgc cccgcctgga
421 gatctcagac ctcccagatg gtgtggaagg agagcatcta gtgagttccc agagtggaca
481 gagccctcca gagccacagg atcccgaggc tcccagctcc tcaggcccag gacacctggt
541 ggccatgggc aaggtgagca ggacccctgt ggaagctggt gtgagccagt cagatgcaga
601 gaacgcagcc ccctcctgcc cggatgagca tgacactctg ccccggcgcc gaggtcgacc
661 ttccaggcgc ttcctaggca agaaataccg caagtactat tacaagtcgc ccaaaccact
721 tttgaggccc ttcctgtgcc gcatctgtgg ttctcgcttt ctgtcccacg aggacctgcg
781 cttccacgtc aactcccatg aggctggcga tccccagctc ttcaagtgcc tgcagtgcag
841 ctatcgttcc cgccgctggt cctcgctcaa ggagcacatg ttcaaccacg tgggcagcaa
901 gccctacaag tgtgacgagt gcagctacac cagtgtctac cggaaggacg tcattcggca
961 cgccgctgtg cacggccggg accggaagaa gaggccagat ccgactccaa agctgagctc
1021 tttcccctgc cctgtgtgtg gccgtgtgta ccccatgcag aaaagactca cgcagcacat
1081 gaagacgcac agcactgaga agccccacat gtgtgacaag tgtggaaagt cctttaagaa
1141 gcgctacacc ttcaaaatgc acctgctcac gcacatccag gctgttgcca accgcaggtt
1201 caagtgtgag ttctgtgagt ttgtttgtga agacaagaag gcactgctga accaccagtt
1261 gtcccacgtc agtgacaagc ccttcaaatg cagcttttgt ccctaccgca ccttccgaga
1321 ggacttcttg cggtcccatg tggctgtcaa gcacacaggg gccaagccct tcgcctgtga
1381 gtactgccac ttcagcacac ggcacaagaa gaacctgcgc ctgcacgtac ggtgccgaca
1441 cgcaagcagc ttcgaggaat gggggaggcg ccaccctgag gagcccccct cccgccgtcg
1501 ccccttcttc tctctgcagc agattgagga gctgaagcag cagcacagtg cggcccctgg
1561 accacctacc agttccccag gacctcctga gataccccca gaggcgacaa ctttccagtc
1621 atctgaggct ccctcattgc tctgttctga caccctgggc ggcgccacca tcatctacca
1681 gcaaggagct gaggagtcga cagcgatggc cacgcagaca gccttggatc ttctgctgaa
1741 catgagtgct cagcgggaac tggggggcac agccctgcag gtggctgtgg tgaagtcgga
1801 agatgtggaa gcagggttag catcccctgg tgggcagccc tcccctgaag gtgccactcc
1861 acaggtggtc accctccacg tggcagagcc agggggcggt gcagcagccg agagccagct
1921 aggccctcct gacctaccgc agatcaccct ggcacctggt ccatttggtg ggactggcta
1981 cagtgtcatc acagcacccc ctatggagga gggaacatca gctcctggca caccttacag
2041 cgaggagccc gcaggagagg cagcccaggc tgtggttgtg agtgacaccc taaaagaagc
2101 tggcacccac tacatcatgg ctactgatgg tacccagttg caccacattg agctcaccgc
2161 agatggctcc atctccttcc caagtccaga tgctctggcc tctggtgcca aatggcccct
2221 gctgcagtgt gggggactgc ccagagacgg ccctgagccc ccatctccag ccaagaccca
2281 ctgcgtaggg gactcccaga gctctgcctc ctcacctcct gcaaccagca aagccctggg
2341 cctggcagtg cccccgtcac cgccatctgc agccactgct gcatcaaaga agttttcctg
2401 caagatctgt gccgaggcct tccctggccg agctgagatg gagagtcaca agcgggccca
2461 cgctgggcct ggtgccttca agtgccccga ctgccccttc agtgcccgcc agtggcccga
2521 ggtccgggcg cacatggcac agcactcaag cctacggccc caccagtgta gccagtgcag
2581 ctttgcctcc aagaacaaga aggacctgcg tcggcacatg ctgactcaca caaaggagaa
2641 gccttttgca tgccacctct gcgggcagcg tttcaaccgt aacgggcacc tcaagttcca
2701 catccagcgg ctgcacagtc ctgatgggag gaagtcagga acccctacag cccgggcccc
2761 tacccagacc ccaacccaga ccatcatcct gaacagtgat gacgaaacac tggccaccct
2821 gcacactgca ctccagtcca gtcacggggt cctgggccca gagcggctac agcaggcact
2881 gagccaggaa cacatcatcg ttgcccagga acagacagtg accaatcagg aggaagccgc
2941 ctacatccaa gagatcacca cggcagatgg ccagaccgta cagcacctgg tgacctccga
3001 caaccaggtg cagtatatca tctcccagga tggtgtcgag cacctgctcc cccaggaata
3061 tgttgtggtc cctgaaggcc atcacatcca ggtacaggag ggccagatca cacacatcca
3121 gtatgaacaa ggagccccgt tccttcagga gtcccagatc cagtatgtgc ctgtgtcccc
3181 aggccagcag cttgtcacac aggctcaact tgaggctgca gcacactcag ctgtcacagc
3241 agtggctgat gctgccatgg cccaagccca gggcctgttt ggtacagacg agacagtgcc
3301 cgaacacatt caacagctgc agcaccaggg catcgagtac gacgtcatca ccctggccga
3361 tgactgagcc ccgagggccc aacacagatc atggatttgc ggccagctct cctgggggta
3421 gggggccacc aggactcacc tccctcttca tttaggatct ccagatactg gatagccagc
3481 atcctctcat tcccagggag ccagacctgt gctgttgggg ttaggggcag ccatgggccc
3541 cagccaggac atgctgggtg ccccagcctg caggcaggct ttgggagaga aatttatttt
3601 tgtttgggtg gacccactgg cctgtcagtc tcaataaagg gaccggagtc cagtcctgaa
3661 aaaaaaaaaa aaaa
//