LOCUS BC041164 2266 bp mRNA linear HUM 09-JUN-2008
DEFINITION Homo sapiens sphingomyelin phosphodiesterase 1, acid lysosomal,
mRNA (cDNA clone MGC:48856 IMAGE:5762229), complete cds.
ACCESSION BC041164
VERSION BC041164.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2266)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2266)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (16-DEC-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Life Technologies, Inc.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 84 Row: m Column: 5
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 56117839.
FEATURES Location/Qualifiers
source 1..2266
/db_xref="H-InvDB:HIT000052529"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:48856 IMAGE:5762229"
/tissue_type="Lung, Spleen, fetal, pooled"
/clone_lib="NIH_MGC_122"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..2266
/gene="SMPD1"
/gene_synonym="ASM"
/gene_synonym="NPD"
/db_xref="GeneID:6609"
/db_xref="HGNC:HGNC:11120"
/db_xref="MIM:607608"
CDS 97..1191
/gene="SMPD1"
/gene_synonym="ASM"
/gene_synonym="NPD"
/codon_start=1
/product="SMPD1 protein"
/protein_id="AAH41164.1"
/db_xref="GeneID:6609"
/db_xref="HGNC:HGNC:11120"
/db_xref="MIM:607608"
/translation="MPRYGASLRQSCPRSGREQGQDGTAGAPGLLWMGLALALALALA
LALSDSRVLWAPAEAHPLSPQGHPARLHRIVPRLRDVFGWGNLTCPICKGLFTAINLG
LKKEPNVARVGSVAIKLCNLLKIAPPAVCQSIVHLFEDDMVEVWRRSVLSPSEACGLL
LGSTCGHWDIFSSWNISLPTVPKPPPKPPSPPAPGAPVSRILFLTDLHWDHDYLEGTD
PDCADPLCCRRGSGLPPASRPGAGYWGEYSKCDLPLRTLESLLSGLGPAGPFDMVYWT
GDIPAHDVWHQTRQDQLRALTTVTALVRKFLGPVPVYPAVGNHESTPVNSFPPPFIEG
NHSSRWLYEAMAKAWEPWLPAEALRTLRCI"
BASE COUNT 484 a 702 c 631 g 449 t
ORIGIN
1 ggtgtccccg gcgccgcccg gggccctgag ggctggctag ggtccaggcc gggggggacg
61 ggacagacga accagccccg tgtaggaagc gcgacaatgc cccgctacgg agcgtcactc
121 cgccagagct gccccaggtc cggccgggag cagggacaag acgggaccgc cggagccccc
181 ggactccttt ggatgggcct ggcgctggcg ctggcgctgg cgctggcgct ggctctgtct
241 gactctcggg ttctctgggc tccggcagag gctcaccctc tttctcccca aggccatcct
301 gccaggttac atcgcatagt gccccggctc cgagatgtct ttgggtgggg gaacctcacc
361 tgcccaatct gcaaaggtct attcaccgcc atcaacctcg ggctgaagaa ggaacccaat
421 gtggctcgcg tgggctccgt ggccatcaag ctgtgcaatc tgctgaagat agcaccacct
481 gccgtgtgcc aatccattgt ccacctcttt gaggatgaca tggtggaggt gtggagacgc
541 tcagtgctga gcccatctga ggcctgtggc ctgctcctgg gctccacctg tgggcactgg
601 gacattttct catcttggaa catctctttg cctactgtgc cgaagccgcc ccccaaaccc
661 cctagccccc cagccccagg tgcccctgtc agccgcatcc tcttcctcac tgacctgcac
721 tgggatcatg actacctgga gggcacggac cctgactgtg cagacccact gtgctgccgc
781 cggggttctg gcctgccgcc cgcatcccgg ccaggtgccg gatactgggg cgaatacagc
841 aagtgtgacc tgcccctgag gaccctggag agcctgttga gtgggctggg cccagccggc
901 ccttttgata tggtgtactg gacaggagac atccccgcac atgatgtctg gcaccagact
961 cgtcaggacc aactgcgggc cctgaccacc gtcacagcac ttgtgaggaa gttcctgggg
1021 ccagtgccag tgtaccctgc tgtgggtaac catgaaagca cacctgtcaa tagcttccct
1081 ccccccttca ttgagggcaa ccactcctcc cgctggctct atgaagcgat ggccaaggct
1141 tgggagccct ggctgcctgc cgaagccctg cgcaccctca ggtgcatata attggccaca
1201 ttcccccagg gcactgtctg aagagctgga gctggaatta ttaccgaatt gtagccaggt
1261 atgagaacac cctggctgct cagttctttg gccacactca tgtggatgaa tttgaggtct
1321 tctatgatga agagactctg agccggccgc tggctgtagc cttcctggca cccagtgcaa
1381 ctacctacat cggccttaat cctggttacc gtgtgtacca aatagatgga aactactccg
1441 ggagctctca cgtggtcctg gaccatgaga cctacatcct gaatctgacc caggcaaaca
1501 taccgggagc cataccgcac tggcagcttc tctacagggc tcgagaaacc tatgggctgc
1561 ccaacacact gcctaccgcc tggcacaacc tggtatatcg catgcggggc gacatgcaac
1621 ttttccagac cttctggttt ctctaccata agggccaccc accctcggag ccctgtggca
1681 cgccctgccg tctggctact ctttgtgccc agctctctgc ccgtgctgac agccctgctc
1741 tgtgccgcca cctgatgcca gatgggagcc tcccagaggc ccagagcctg tggccaaggc
1801 cactgttttg ctagggcccc agggcccaca tttgggaaag ttcttgatgt aggaaagggt
1861 gaaaaagccc aaatgctgct gtggttcaac caggcaagat catccggtga aagaaccagt
1921 ccctgggccc caaggatgcc ggggaaacag gaccttctcc tttcctggag ctggtttagc
1981 tggatatggg agggggtttg gctgcctgtg cccaggagct agactgcctt gaggctgctg
2041 tcctttcaca gccatggagt agaggcctaa gttgacactg ccctgggcag acaagacagg
2101 agctgtcgcc ccaggcctgt gctgcccagc caggaaccct gtactgctgc tgcgacctga
2161 tgctgccagt ctgttaaaat aaagataaga gacttggact ccaaaaaaaa aaaaaaaaaa
2221 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaa
//