LOCUS BC041160 2253 bp mRNA linear HUM 03-NOV-2008 DEFINITION Homo sapiens coiled-coil domain containing 88A, mRNA (cDNA clone IMAGE:3906864), partial cds. ACCESSION BC041160 VERSION BC041160.1 KEYWORDS . SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 2253) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 2253) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (16-DEC-2002) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: ATCC cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Institute for Systems Biology http://www.systemsbiology.org contact: amadan@systemsbiology.org Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 84 Row: b Column: 23 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 50897851. FEATURES Location/Qualifiers source 1..2253 /db_xref="H-InvDB:HIT000096602" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="IMAGE:3906864" /tissue_type="Uterus, leiomyosarcoma" /clone_lib="NIH_MGC_71" /lab_host="DH10B" /note="Vector: pCMV-SPORT6" gene 1..>2253 /gene="CCDC88A" /gene_synonym="APE" /gene_synonym="GIRDIN" /gene_synonym="GIV" /gene_synonym="GRDN" /gene_synonym="HkRP1" /db_xref="GeneID:55704" /db_xref="HGNC:HGNC:25523" /db_xref="MIM:609736" CDS 749..>2253 /gene="CCDC88A" /gene_synonym="APE" /gene_synonym="GIRDIN" /gene_synonym="GIV" /gene_synonym="GRDN" /gene_synonym="HkRP1" /codon_start=1 /product="CCDC88A protein" /protein_id="AAH41160.1" /db_xref="GeneID:55704" /db_xref="HGNC:HGNC:25523" /db_xref="MIM:609736" /translation="MENEIFTPLLEQFMTSPLVTWVKTFGPLAAGNGTNLDEYVALVD GVFLNQVMLQINPKLESQRVNKKVNNDASLRMHNLSILVRQIKFYYQETLQQLIMMSL PNVLIIGKNPFSEQGTEEVKKLLLLLLGCAVQCQKKEEFIERIQGLDFDTKAAVAAHI QEVTHNQENVFDLQWMEVTDMSQEDIEPLLKNMALHLKRLIDERDEHSETIIELSEER DGLHFLPHASSSAQSPCGSPGMKRTESRQHLSVELADAKAKIRRLRQELEEKTEQLLD CKQELEQMEIELKRLQQENMNLLSDARSARMYRDELDALREKAVRVDKLESEVSRYKE RLHDIEFYKARVEELKEDNQVLLETKTMLEDQLEGTRARSDKLHELEKENLQLKAKLH DMEMERDMDRKKIEELMEENMTLEMAQKQSMDESLHLGWELEQISRTSELSEAPQKSL GHEVNELTSSRLLKLEMENQSLTKTVEELRTTVEKVEGNASKILKMEKKKK" BASE COUNT 668 a 436 c 581 g 568 t ORIGIN 1 gaaggctgga gcgcggcggt gattttgtgc cagggattcc cagagacgcg ctgaaaggct 61 ggcagggctt aggaagctgg ggggttaggg acacacattc aagcccccac ccccgggagg 121 ggaagggggc tggaggcgag gcttgagggc ggcggaggaa tggtgtctgc tcggggggaa 181 ggggcgagcc ctgcctgttg gtactgaggg gctgcgggca gtggaggctc cgcgggtcga 241 aagcggctcc atgcccatcg gtgggtggaa cgtgtagagg tcggaacgcc gaggtcgagt 301 ctggtggcgc ctcggtatcc ttaacgtggt ctctgtttaa cgtatttcat ttagcccccg 361 ttgggattga ttcattggga gcagtttcgc tggtctggat cctccaggag ctggacaacc 421 ttgacgggct ttttgtcttg ggttccagcc ccctttccct tcctcctcct ccagatgcct 481 tttctctgcc cctcctcgcc cggtacagac atttccagcg caggctgctg ctcgtggtgt 541 ccgtcgtcga agccacttct tgggatttcg gctcgtttca ctctggggtg ttttttgagg 601 agggagagtg cccccctcct ccacgatggg atttttctcc cttgccgaaa tggactttca 661 ttgatttcta cttacttcca cgtttagtga ccaattccct aggcgtattt ttgtggtagt 721 tccttttttc aaatacatac tctgtaaaat ggagaacgaa atttttactc cccttctgga 781 gcagttcatg accagccctt tggtcacttg ggttaaaacg tttggacctc tggccgcagg 841 aaatgggacc aaccttgatg aatatgtggc tttggtggat ggggtattct tgaaccaggt 901 catgctccaa attaatccta aattggagag tcagagagta aataaaaaag tcaataatga 961 tgcctcactt agaatgcaca atctatccat tttggtgaga cagataaaat tttattacca 1021 ggagactttg cagcaattga tcatgatgtc gttgccaaat gtcttaatca ttggcaaaaa 1081 tcccttttct gaacaaggca cagaagaagt taaaaaactg cttttacttt tattgggttg 1141 tgcagttcag tgtcagaaaa aagaggaatt tattgaaaga attcaaggtt tagattttga 1201 tacaaaagca gcggttgccg cacatattca agaggtaact cataatcagg aaaatgtgtt 1261 tgacctgcaa tggatggaag tgactgatat gtcgcaggag gacatagaac cactcttgaa 1321 aaatatggca ttgcatctaa aaagacttat agatgagaga gatgaacatt cagagactat 1381 catagaactc tctgaagagc gggatggtct ccattttcta ccccatgcct cttcatctgc 1441 acagtcaccc tgtggttctc caggcatgaa gcgaacagaa agtcgacaac atctgtcggt 1501 ggaactggca gatgctaaag ccaagataag aaggcttagg caggaattgg aggaaaagac 1561 tgagcagttg ttggattgta aacaagaact tgagcaaatg gaaatagaac tcaaaaggct 1621 gcaacaagag aacatgaatt tgctttcgga tgctcgctct gccagaatgt accgagatga 1681 attagatgca cttcgagaga aagcagtcag agtcgataag cttgaaagtg aagtcagcag 1741 atataaagag agactacatg atattgaatt ttataaggca agagttgagg aattaaaaga 1801 agacaatcaa gttttattag aaacaaaaac catgttggaa gaccaactag agggaactcg 1861 tgctcgttct gataaattac atgaattaga aaaagagaac ttacaactga aagctaaact 1921 tcatgatatg gaaatggaac gagatatgga tagaaaaaag attgaagaat taatggaaga 1981 aaatatgact ttggaaatgg cacagaaaca aagtatggat gaatcattac atcttggctg 2041 ggaactggaa cagatatcca gaactagtga actttccgaa gcaccccaga aatccctggg 2101 ccatgaggtg aatgagttga catcaagtag attattgaag ctagagatgg aaaatcaaag 2161 tttgacaaaa accgtagaag agcttcggac tactgtggaa aaagtagaag gcaatgcttc 2221 caaaatcctg aaaatggaaa aaaaaaaaaa aaa //