LOCUS BC041124 3564 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens neutral sphingomyelinase (N-SMase) activation
associated factor, mRNA (cDNA clone MGC:47757 IMAGE:5785460),
complete cds.
ACCESSION BC041124
VERSION BC041124.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3564)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3564)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (13-DEC-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 82 Row: m Column: 3
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 31543296.
FEATURES Location/Qualifiers
source 1..3564
/db_xref="H-InvDB:HIT000052512"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:47757 IMAGE:5785460"
/tissue_type="Uterus, leiomyosarcoma"
/clone_lib="NIH_MGC_71"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..3564
/gene="NSMAF"
/gene_synonym="FAN"
/db_xref="GeneID:8439"
/db_xref="HGNC:HGNC:8017"
/db_xref="MIM:603043"
CDS 197..2950
/gene="NSMAF"
/gene_synonym="FAN"
/codon_start=1
/product="neutral sphingomyelinase (N-SMase) activation
associated factor"
/protein_id="AAH41124.1"
/db_xref="GeneID:8439"
/db_xref="HGNC:HGNC:8017"
/db_xref="MIM:603043"
/translation="MAFIRKKQQEQQLQLYSKERFSLLLLNLEEYYFEQHRANHILHK
GSHHERKIRGSLKICSKSVIFEPDSISQPIIKIPLRDCIKIGKHGENGANRHFTKAKS
GGISLIFSQVYFIKEHNVVAPYKIERGKMEYVFELDVPGKVEDVVETLLQLHRASCLD
KLGDQTAMITAILQSRLARTSFDKNRFQNISEKLHMECKAEMVTPLVTNPGHVCITDT
NLYFQPLNGYPKPVVQITLQDVRRIYKRRHGLMPLGLEVFCTEDDLCSDIYLKFYEPQ
DRDDLYFYIATYLEHHVAEHTAESYMLQWQRGHLSNYQYLLHLNNLADRSCNDLSQYP
VFPWIIHDYSSSELDLSNPGTFRDLSKPVGALNKERLERLLTRYQEMPEPKFMYGSHY
SSPGYVLFYLVRIAPEYMLCLQNGRFDNADRMFNSIAETWKNCLDGATDFKELIPEFY
GDDVSFLVNSLKLDLGKRQGGQMVDDVELPPWASSPEDFLQKSKDALESNYVSEHLHE
WIDLIFGYKQKGSDAVGAHNVFHPLTYEGGVDLNSIQDPDEKVAMLTQILEFGQTPKQ
LFVTPHPRRITPKFKSLSQTSSYNASMADSPGEESFEDLTEESKTLAWNNITKLQLHE
HYKIHKEAVTGITVSRNGSSVFTTSQDSTLKMFSKESKMLQRSISFSNMALSSCLLLP
GDATVITSSWDNNVYFYSIAFGRRQDTLMGHDDAVSKICWHDNRLYSASWDSTVKVWS
GVPAEMPGTKRHHFDLLAELEHDVSVDTISLNAASTLLVSGTKEGTVNIWDLTTATLM
HQIPCHSGIVCDTAFSPDSRHVLSTGTDGCLNVIDVQTGMLISSMTSDEPQRCFVWDG
NSVLSGSQSGELLVWDLLGAKISERIQGHTGAVTCIWMNEQCSSIITGGEDRQIIFWK
LQY"
BASE COUNT 1036 a 781 c 811 g 936 t
ORIGIN
1 ggatgctgcg gtgagcgcgg ccgggacgcc gcgtcgggct ctcggccgcc cagcggcgcc
61 gcaggggaag ccaggccggc agccgcgcgc tccccagccg gccaccaatc ccgccctccc
121 cggctcctcc ggacctcctc ggcaggcggc ggcggggcct gcctgtgcgc tctgcgcccg
181 cccgcgccta ccctccatgg cgtttatccg gaagaagcag caggagcagc agctgcagct
241 ctactccaag gagagatttt ccttgctgct gcttaacttg gaggagtact actttgaaca
301 gcatagagcc aatcacattt tgcacaaggg cagtcaccat gaaaggaaaa tcagaggctc
361 cttaaaaata tgttcaaaat cggtgatttt tgaaccagat tcaatatccc agcccatcat
421 caagattcct ttgagagact gtataaaaat aggaaagcat ggagaaaatg gagccaatag
481 acacttcaca aaggcaaaat ctgggggtat ttcactcatt ttcagtcagg tatatttcat
541 taaagaacat aatgttgttg caccatataa aatagaaagg ggcaaaatgg aatatgtttt
601 tgaattggat gttcccggga aagtggaaga tgttgtggag acgttgcttc agcttcacag
661 agcatcctgc cttgacaaat tgggtgacca aaccgccatg ataacagcta ttttgcagtc
721 tcgtttagct agaacatcat ttgacaaaaa caggttccaa aacatttctg aaaagctgca
781 catggaatgc aaagcagaaa tggtgacgcc tctggtgact aatcctggac acgtgtgcat
841 cacggacaca aacctgtatt ttcagcccct caacggctac ccgaaacctg tggtccagat
901 aacactccaa gatgtccgcc gcatctacaa aaggaggcac ggcctcatgc ctctgggctt
961 ggaagtattt tgcacagaag atgatctgtg ttccgacatc tacctaaagt tctatgaacc
1021 tcaagataga gatgatctct atttttacat tgccacatac ctagagcacc atgtggcgga
1081 gcacactgct gagagctaca tgctgcagtg gcagcgtgga cacctttcca actatcagta
1141 cctccttcac ctcaacaacc tggccgaccg cagctgcaac gacctctccc agtaccctgt
1201 gtttccatgg ataatacatg attattccag ctcagaacta gatttgtcaa atccaggaac
1261 cttccgggat ctcagtaagc cagtaggggc cctaaataag gaacggctgg agagactact
1321 gacacgctac caggaaatgc ctgaaccaaa gttcatgtat gggagtcact actcttcccc
1381 gggttatgta cttttttatc ttgttaggat tgcaccagag tatatgctgt gcctgcagaa
1441 tggaagattt gataatgcag atagaatgtt caacagtatt gcagaaactt ggaaaaactg
1501 tctggatggt gcaacggatt ttaaagagtt aattccagaa ttctatggtg atgatgtgag
1561 ctttctagtc aatagcctga agttggattt gggaaagaga caaggaggac agatggttga
1621 cgatgtggag cttccccctt gggcttccag tcccgaggac tttctccaga agagcaaaga
1681 tgcattggaa agcaattatg tgtctgaaca ccttcacgag tggattgatc taatatttgg
1741 ctacaaacaa aaagggagtg atgcagttgg ggcccataat gtatttcatc ccctgaccta
1801 tgaaggaggt gtagacttga acagcatcca ggatcctgat gagaaggtag ccatgcttac
1861 gcaaatcttg gaatttgggc agacaccaaa acaactattt gtgacaccac atcctcgaag
1921 gatcacccca aagtttaaaa gtttgtccca gacctccagt tataatgctt ctatggcaga
1981 ttccccaggt gaagagtctt ttgaagacct gaccgaagaa agcaaaacac tggcctggaa
2041 taacatcacc aaactgcagt tacacgagca ctataaaatc cacaaagaag cagttactgg
2101 aatcacggtc tctcgcaatg gatcttcagt attcacaaca tcccaagatt ccaccttgaa
2161 gatgttttct aaagaatcaa aaatgctaca aagaagtata tcattttcaa atatggcttt
2221 atcgtcttgt ttacttttac caggagatgc cactgtcata acttcttcat gggataataa
2281 tgtctatttt tattccatag catttggaag acgccaggac acgttaatgg gacatgatga
2341 tgctgttagt aagatctgtt ggcatgacaa caggctatat tctgcatcgt gggactctac
2401 agtgaaggtg tggtctggtg ttcctgcaga gatgccaggc accaaaagac accactttga
2461 cttgctggcc gagctggaac atgatgtcag tgtagataca atcagtttaa atgctgcaag
2521 cacactgtta gtttccggca ccaaagaagg cacagtgaat atttgggacc tcacaacggc
2581 caccttaatg caccagattc catgccattc agggattgta tgtgacactg cttttagccc
2641 agatagtcgc catgtcctca gcacaggaac agatggctgt cttaatgtca ttgatgtgca
2701 gacaggaatg ctcatctcct ccatgacatc agatgagccc cagaggtgct ttgtctggga
2761 tggaaattcc gttttatctg gcagtcagtc tggtgaactg ctcgtttggg acctccttgg
2821 agcaaaaatc agtgagagaa tacagggcca cacaggtgct gtgacatgta tatggatgaa
2881 tgaacagtgt agcagtatca tcacaggagg ggaagacaga caaattatat tctggaaatt
2941 gcagtattaa gtgccttttc ctctcctgaa tattaaattg aactctattt aatgcatttt
3001 taaaccaaac ttttaaacgg actggtgaat gtgcaatgtt agtaattaga agttttacca
3061 catggaaaat ttgtggtttt aaactttcta aatcatggtg acttcattga aagccattag
3121 ttgctattct cttagggcag ataaaatgcg gctgtgttag gaaaaacatg ttacactgta
3181 aggcagatga tcgtccccgt atgatgattg tcagaagaca ggactaagta gcagagaata
3241 gctaagagat aaattgggct ggggaaactt gtcagaaagc actgaacaat taagaaattt
3301 tccaagaaaa tgtgcagtat tctctgctac ttctgaatct gttttgtctt cctaatctat
3361 cacaattgcc acccatcggg ttttgggtgt gtgttttcat agcgtggtta ctttctataa
3421 tgctgtaccc agattctaag aacctggaga aggattagca gttcttagta agtttactgt
3481 gtataggaac ggtttgtatt tcattacagc tattcatctt ttctacatta aaaatatttt
3541 tctctaaaga aaaaaaaaaa aaaa
//