LOCUS BC041119 3279 bp mRNA linear HUM 19-JUN-2006
DEFINITION Homo sapiens YTH domain containing 1, mRNA (cDNA clone MGC:47781
IMAGE:5541053), complete cds.
ACCESSION BC041119
VERSION BC041119.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3279)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3279)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (13-DEC-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC/DCTD/DTP
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 82 Row: g Column: 9
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 21166354.
FEATURES Location/Qualifiers
source 1..3279
/db_xref="H-InvDB:HIT000259090_03"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:47781 IMAGE:5541053"
/tissue_type="Skin, melanotic melanoma."
/clone_lib="NIH_MGC_72"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..3279
/gene="YTHDC1"
/gene_synonym="KIAA1966"
/gene_synonym="YT521"
/gene_synonym="YT521-B"
/db_xref="GeneID:91746"
/db_xref="HGNC:HGNC:30626"
CDS 284..2467
/gene="YTHDC1"
/gene_synonym="KIAA1966"
/gene_synonym="YT521"
/gene_synonym="YT521-B"
/codon_start=1
/product="YTH domain containing 1"
/protein_id="AAH41119.1"
/db_xref="GeneID:91746"
/db_xref="HGNC:HGNC:30626"
/translation="MAADSREEKDGELNVLDDILTEVPEQDDELYNPESEQDKNEKKG
SKRKSDRMESTDTKRQKPSVHSRQLVSKPLSSSVSNNKRIVSTKGKSATEYKNEEYQR
SERNKRLDADRKIRLSSSASREPYKNQPEKTCVRKRDPERRAKSPTPDGSERIGLEVD
RRASRSSQSSKEEVNSEEYGSDHETGSSGSSDEQGNNTENEEEGVEEDVEEDEEVEED
AEEDEEVDEDGEEEEEEEEEEEEEEEEEEEEYEQDERDQKEEGNDYDTRSEASDSGSE
SVSFTDGSVRSGSGTDGSDEKKKERKRARGISPIVFDRSGSSASESYAGSEKKHEKLS
SSVRAVRKDQTSKLKYVLQDARFFLIKSNNHENVSLAKAKGVWSTLPVNEKKLNLAFR
SARSVILIFSVRESGKFQGFARLSSESHHGGSPIHWVLPAGMSAKMLGGVFKIDWICR
RELPFTKSAHLTNPWNEHKPVKIGRDGQEIELECGTQLCLLFPPDESIDLYQVIHKMR
HKRRMHSQPRSRGRPSRREPVRDVGRRRPEDYDIHNSRKKPRIDYPPEFHQRPGYLKD
PRYQEVDRRFSGVRRDVFLNGSYNDYVREFHNMGPPPPWQGMPPYPGMEQPPHHPYYQ
HHAPPPQAHPPYSGHHPVPHEARYRDKRVHDYDMRVDDFLRRTQAVVSGRRSRPRERD
RERERDRPRDNRRDRERDRGRDRERERERLCDRDRDRGERGRYRR"
BASE COUNT 1056 a 600 c 820 g 803 t
ORIGIN
1 cgccgtcgcc atctgtttcc cttccctccc ccatacctag cccgagtctg agccctaacg
61 agaaggctgg gcctaggccg ctggatgctg gagtgaaagg aagggagaaa gggaaaaagc
121 gggaagagtc gagaaggctg agtgttaaga ggccaagtgc gacgcgcgta tccgggcaga
181 cggactgacg gacgggcccg tgcttctgcc gcggctgcgg cgcccgcgcg agtcgcgtct
241 aagcggcggc ggcggtggca gcggcggaaa ccgaagggga gccatggcgg ctgacagtcg
301 ggaggagaaa gatggagaac ttaatgttct ggatgatatt ttaactgaag taccagaaca
361 agatgatgaa ctgtataatc cagagagtga acaagataaa aatgagaaaa agggatcaaa
421 aagaaaaagt gatcgaatgg aatctactga taccaaacga caaaagcctt ctgtccattc
481 aagacaactg gtttctaagc cactgagctc atctgttagc aataacaaaa gaatagttag
541 tacaaaagga aagtcagcca cagagtataa aaatgaggaa tatcaaagat ctgaaagaaa
601 caagcgtcta gatgctgatc ggaaaattcg tctatcaagt agtgcctcca gagaacctta
661 taagaatcaa cctgaaaaaa cctgtgtccg gaaaagggat cctgaaagga gggccaaatc
721 tcctacgcca gatggttctg agagaattgg gcttgaagtg gatagacgtg caagcagatc
781 cagccagtct tctaaggaag aagtgaactc tgaagaatat ggctctgacc atgagactgg
841 cagcagtggt tcttctgatg agcaagggaa caacactgag aatgaggagg aaggagtgga
901 agaagatgtg gaggaagatg aagaagtaga agaagatgca gaagaagatg aagaggtgga
961 tgaagatgga gaggaggagg aggaagagga ggaggaggaa gaggaggagg aggaggagga
1021 agaagaagaa tatgaacagg atgagagaga ccagaaagag gagggaaatg attatgacac
1081 tcgaagtgag gccagtgact ctggttctga atctgtttcc ttcacagatg ggtctgtcag
1141 atctggttca ggcacagatg gatcagatga gaaaaagaag gaaaggaaga gagctagagg
1201 catatctcca attgtttttg atagaagtgg aagctctgca tcagagtcat atgcaggttc
1261 agaaaagaag catgagaaat tatcatcttc cgttcgtgct gtccgaaaag atcaaaccag
1321 taaactcaaa tatgtgcttc aagatgcaag atttttcctc ataaagagta acaaccatga
1381 gaatgtgtct cttgccaaag cgaagggtgt atggtccacg ctccctgtaa atgagaagaa
1441 attaaatctt gcatttagat ctgcaaggag tgttatctta atattttctg tcagagagag
1501 tggaaaattt caagggtttg caagactttc ttcagaatca catcacggag gatctcctat
1561 acactgggtg cttccagcag gaatgagtgc taaaatgctg ggaggtgtct ttaaaattga
1621 ctggatttgc aggcgtgaat tacccttcac taagtcggct catctcacca atccttggaa
1681 tgaacataaa ccagtaaaga tcggacgtga tggacaggaa attgaacttg aatgtggaac
1741 ccagctttgt cttctgtttc cccccgatga aagtattgac ttgtatcagg tcattcataa
1801 aatgcgtcac aagagaagaa tgcattctca gccccgatca cgaggacgtc catcccgtcg
1861 agaaccagtc cgggatgtgg gaaggcgtcg accagaagat tatgatattc ataacagcag
1921 aaagaaacca aggattgact atccccctga gtttcaccag agaccagggt atttaaagga
1981 tccacgatac caggaagtgg acagacgatt ttcaggagtt cgccgagatg tgtttttaaa
2041 tgggtcctac aatgattatg tgagggaatt tcataacatg ggaccaccac caccttggca
2101 aggaatgccc ccttacccag gaatggaaca acctccacac catccttact atcagcacca
2161 tgctccacct cctcaagctc atccccctta ctcaggacat catccagtac cacatgaagc
2221 aagatacaga gataaacgag tacatgatta tgatatgagg gtggatgatt tccttcgtcg
2281 cacacaagct gttgtcagtg gccggagaag tagaccccgt gaaagagacc gggaacgaga
2341 gcgagaccgc cctagagata acagacgaga cagagagcga gatagaggac gtgatagaga
2401 aagagaaaga gagcgattat gtgatcgaga cagagaccga ggggagagag gtcgatatag
2461 aagataatgg gcttttggaa gcactgattg tttaaagata caaaaaatct tgtatttttt
2521 ttttgtgtgt gtttacaagt agtaaattta ttttcagctg tctgcctatg aagttcattg
2581 tgtagaagga tttattatga ccccctttgt tccaagcatg cagtatcata agaactggaa
2641 aaactcaaat ccgccaaaaa tccacagctg acagttgaat tgacactttt attggggcag
2701 aatggaacag tccaagaatg tagatactga ttctttctcc ataaatgttc ttatagtgtg
2761 ttcatcctag agttattttt ttgtttgttt ttttcctttt tggatcttga ttgataactg
2821 ccatgatatt ttgctttgat gtgtttctac atgtagttgc acacggttca gtaaaaataa
2881 tgctgctatc gagtatgcaa atattgaagt atgatggttt gactgtatgg cagtgttgta
2941 gcagcctctt gtttttttcc ccattgcctc tttttttaaa aaacttataa agtcactttt
3001 tatttttcct cagtcttcaa tgacgagagc aatattaaga agacattgct atctaatttt
3061 taatcttttt aaatgaaaaa ttcctatgtt cagtagcgtg gttgatgcta ttgtttagcc
3121 ttcccctcca aattgtatac attggcttgg aatgttcaca acttgcgtgc gtggcagcgg
3181 aagacgattc ccatattcta cattgctact gttttgtata aaataaattg gtaaagattg
3241 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaa
//