LOCUS BC041097 2929 bp mRNA linear HUM 03-NOV-2008
DEFINITION Homo sapiens LysM, putative peptidoglycan-binding, domain
containing 4, mRNA (cDNA clone MGC:46514 IMAGE:5240362), complete
cds.
ACCESSION BC041097
VERSION BC041097.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2929)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2929)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (13-DEC-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Life Technologies, Inc.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 78 Row: i Column: 11
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 40288200.
FEATURES Location/Qualifiers
source 1..2929
/db_xref="H-InvDB:HIT000052505"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:46514 IMAGE:5240362"
/tissue_type="Brain, fetal, whole pooled"
/clone_lib="NIH_MGC_121"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..2929
/gene="LYSMD4"
/db_xref="GeneID:145748"
/db_xref="HGNC:HGNC:26571"
CDS 274..1167
/gene="LYSMD4"
/codon_start=1
/product="LysM, putative peptidoglycan-binding, domain
containing 4"
/protein_id="AAH41097.2"
/db_xref="GeneID:145748"
/db_xref="HGNC:HGNC:26571"
/translation="MAVGTRGTLLKKSLTVWFCGPGARSATRAVSTSLPRREQVTWCC
CSGSWPRRTASTSWRCSMAANTFYFRPNGAGDTRQNLIPDFYAFRVINNGKVADIKKV
NNFIREQDLYALKSVKIPVRNHGILMETHKELKPLLSPSSETTVTVELPEADRAGVGT
GVQAGQLMGFFKGIDQDIERAVQSEIFLHESYCMDSSHQPLLPAPPKTPMDGADCGIQ
WWNAVFIMLLIGIVLPVFYLVYFKIQASGETPNSLNTTVIPNGSMAMGTVPGQAPRLA
VAVPAVTSADSQFSQTTQAGS"
BASE COUNT 694 a 727 c 827 g 681 t
ORIGIN
1 cgcggtggca gctgcgggtc gcgggtcgcg ggtcgcgagt cgccggtcgc cggtcgcggc
61 ggagcctggg cgctgagaag ggacttggag ggaagcgggc ctggagctgc tgccgccgcc
121 cctgagctcg gacgcgaagg ctggccccgt ccccgggctg ccgccgtggt cctgcagtga
181 agaaaatgag gcacgaggaa ttgttaacca agaccttcca aggcccagct gttgtgtgtg
241 ggactccgac cagccacgta tacatgttta agaatggcag tggggactcg ggggactctt
301 ctgaagaaga gtctcaccgt gtggttttgc ggccccgggg caaggagcgc cacaagagcg
361 gtgtccacca gcctccccag gcgggagcag gtgacgtggt gctgctgcag cgggagctgg
421 cccaggagga cagcctcaac aagctggcgc tgcagtatgg ctgcaaacac attttatttt
481 agacctaatg gggctggaga taccaggcag aatttaattc cggatttcta tgcattcaga
541 gtgattaaca atggcaaagt tgcagatatc aagaaagtca acaacttcat cagagaacaa
601 gacttatatg ctttgaaatc tgttaagatt ccagtgagaa accatgggat cctgatggag
661 acccacaaag aactgaaacc ccttctgagc ccgtcttccg agaccacagt gaccgtggaa
721 ctgccagagg cagacagagc aggcgtgggc accggtgtcc aggccggcca actgatgggc
781 ttctttaagg ggattgacca ggatattgag cgtgcagtgc agtcagaaat ctttctacat
841 gaaagttact gcatggacag ctcccatcag ccactgctcc cggcacctcc gaagacgcct
901 atggatggtg cagattgtgg cattcagtgg tggaatgctg ttttcatcat gctgctgatt
961 ggtattgtct tgcctgtctt ttatttggtc tactttaaaa tacaagctag tggtgagacc
1021 cctaatagct tgaacacaac tgtcatcccc aatggctcga tggcaatggg tacagttcca
1081 gggcaagccc ccagactagc agttgcagtg ccagccgtca cttctgcaga cagccagttc
1141 agtcagacca cccaagcggg gagctaagct ttgtttttaa agactcggcc cagctttagc
1201 aattggctgt tgatgtgcct cagctgtcac tggcgatgtc ctaggggtgc tgcattttgc
1261 ttccggggaa ggatggacac ttttcagaag tcactgcagt attcccaatt gcactggccc
1321 tgggcatggc cttacccagt ctaagctggc aggatctaaa acagcagcga cctcggcccc
1381 tatccagaga ggtgcagcaa gagagccatt tccctgtgac atttagtgga ctggccagtt
1441 catagcagca ctgtgaggac ccccaagttg gacgtgctcg gagggaaaga tttatggcct
1501 ctgtcgaggg acctgcagcg tgagagccag tggcatctgc gcggcttgcc tggctcttgc
1561 tgtatcctca cttcctgtgg agcggggatt ggctctgaga aggagtgttc tctgtctgcc
1621 tggcaaaggt gctgtggaat aggcttggca tgccaccctg ttttagagag tgacagttac
1681 agttgtaaca agcctacttc atattggccc cctcagttag cctttttgag gcaatgccat
1741 ttctagagtt gaaaaagccc tggacccaaa ctgcggcact gttgaataaa gggcagtcct
1801 actcctgtcc ttttagagtg gcttagtgtg acacacaggc atctcccagg ccaagcacac
1861 acaggctgcg cccagttccg caggagccgt cccacagcgt ggctctctgg attctcccac
1921 ttgtcctcct tggaaggagc tcttgctggc cagtgtttgg aggggaggat gagtgcctgt
1981 cactgaggcc tcactatggt tggcgtctga agctgggcgg tcgtcaggcc tgtgctgaga
2041 gccgcagccc ctgtgcacac ctaacacagg gcgctccccc tgctgcttcc ctggctcagt
2101 tcttcggagc tccagagtga gaaggccgct tcgtcctttt tctctgggtg atgcccttag
2161 aataacacta tatgcaatgt aactcacaat gttccaggac caaagacttg atggaggggc
2221 tagaggcgac ccttgttgta aaaggcgatc agaacacctg agggaggaag gggcttgcag
2281 ttttcccagc ccttctcgct gccaaggcag cagtggtgct gtggatgggc tggggactgc
2341 gggacagagc ctgctactac ttgggagttg gtgctgccct gtggcatgga ggggtgggag
2401 gggctgagat ggctgctggc ccggcctcca agagttctgg acaggaggca gacactgccc
2461 agatgctcgg tggagggaca gtgatggcct ttgactcatg aggcctggag aaaagtatca
2521 aaggtctcac catgtaagag tgatttccga tttctctcct ttcagttgtg tgaaaaaaca
2581 gctggcctgg gttccattag caaattaaat catcttcaat cttaaattag agaccagaat
2641 gatcttcagg ataaaaagaa cttctgaatc tctgcaatag gaaatgtttc gatcatgcaa
2701 gtgctttccc agccaaatgt ctgtgctctc tgtgtcactg agggccacag gttcctctaa
2761 catctgtcac tgtcacttca ccaggcaggc cttggagttc catgacaaaa tcacttttgt
2821 cagacaaaga atgtatcctt tacttttctc aaatggaata aaattatttc ttctgtggag
2881 gaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaa
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