LOCUS BC040922 2519 bp mRNA linear HUM 22-AUG-2008
DEFINITION Homo sapiens PDZ domain containing ring finger 4, mRNA (cDNA clone
IMAGE:5767589), partial cds.
ACCESSION BC040922
VERSION BC040922.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2519)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2519)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (06-DEC-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Life Technologies, Inc.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 88 Row: p Column: 13.
FEATURES Location/Qualifiers
source 1..2519
/db_xref="H-InvDB:HIT000096457"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:5767589"
/tissue_type="Brain, fetal, whole pooled"
/clone_lib="NIH_MGC_121"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene <1..2519
/gene="PDZRN4"
/gene_synonym="LNX4"
/gene_synonym="SAMCAP3L"
/db_xref="GeneID:29951"
/db_xref="HGNC:HGNC:30552"
/db_xref="MIM:609730"
CDS <1..1765
/gene="PDZRN4"
/gene_synonym="LNX4"
/gene_synonym="SAMCAP3L"
/codon_start=2
/product="PDZRN4 protein"
/protein_id="AAH40922.1"
/db_xref="GeneID:29951"
/db_xref="HGNC:HGNC:30552"
/db_xref="MIM:609730"
/translation="GDRILQINGEDVQNREEAVALLSNDECKRIVLLVARPEIQLDEG
WLEDERNEFLEELNLEMLEEEHNEAMQPTANEVEQPKKQEEEEGTTDTATSSSNNHEK
DSGVGRTDESLRNDESSEQENAAEDPNSTSLKSKRDLGQSQDTLGSVELQYNESLVSG
EYIDSDCIGNPDEDCERFRQLLELKCKIRNHGEYDLYYSSSTIECNQGEQEGVEHELQ
LLNEELRNIELECQNIMQAHRLQKVTDQYGDIWTLHDGGFRNYNTSIDMQRGKLDDIM
EHPEKSDKDSSSAYNTAESCRSTPLTVDRSPDSSLPRVINLTNKKNLRSTMAATQSSS
GQSSKESTSTKAKTTEQGCSAESKEKVLEGSKLPDQEKAVSEHIPYLSPYHSSSYRYA
NIPAHARHYQSYMQLIQQKSAVEYAQSQLSLVSMCKESQKCSEPKMEWKVKIRSDGTR
YITKRPVRDRILKERALKIKEERSGMTTDDDTMSEMKMGRYWSKEERKQHLVRAKEQR
RRREFMMRSRLECLKESPQSGSEGKKEINIIELSHKKMMKKRNKKILDNWMTIQELMT
HGAKSPDGTRVHNAFLSVTTV"
BASE COUNT 881 a 476 c 581 g 581 t
ORIGIN
1 aggggatcgg attttgcaaa taaatgggga agatgtccag aatcgagaag aagcagtggc
61 cttgctgtct aacgatgagt gtaagagaat cgtgctgctt gttgcaaggc cagagattca
121 gctggatgaa ggctggctgg aagatgaaag gaatgaattc ttagaggagt taaacttgga
181 gatgttggaa gaagagcata atgaagcaat gcagcccact gccaatgagg tggagcagcc
241 aaaaaagcaa gaagaagaag aaggcacaac agacactgca acatcctcat ccaacaacca
301 tgagaaggac agtggagtag gacgtacaga tgaaagcttg cgaaatgatg agagctcaga
361 gcaggagaat gcagccgagg accccaatag cacatctttg aagagcaaga gagacctggg
421 gcagagccaa gacactctgg gaagtgttga acttcagtac aatgagagcc tcgtatctgg
481 tgaatacatt gactcagact gcattggcaa cccagatgag gactgtgaaa gattcaggca
541 gctcttggag ctcaaatgca agattcgaaa tcatggagag tatgacctgt attactcaag
601 cagcacaatt gaatgcaatc aaggggagca agagggagtg gagcatgagc tacagttgct
661 taatgaagaa ctgagaaaca ttgagcttga gtgtcagaat atcatgcagg ctcacaggct
721 ccagaaagtg acagaccagt atggagacat ctggacattg catgatggag gattccggaa
781 ttataacacc agcatagata tgcaaagggg aaagctagat gacatcatgg agcatccaga
841 aaagtctgac aaggacagtt ctagtgctta caacacagct gagagctgca gaagtactcc
901 gctcactgta gaccgttccc ctgacagttc ccttccaagg gtgatcaacc tcaccaataa
961 gaaaaacctg agaagcacaa tggcagccac ccagtcctct tccggacaga gcagtaaaga
1021 gtcgacctcc accaaagcca aaaccactga gcaaggttgt agcgctgaaa gcaaggagaa
1081 ggttttagaa ggcagcaagc ttcctgatca agagaaggca gtcagcgaac acatccctta
1141 cctctctcct taccacagct cctcatatag atatgcaaac atcccagcac acgcccggca
1201 ttatcaaagc tacatgcagt taattcaaca gaaatctgca gtcgagtatg ctcagagtca
1261 gctcagcttg gtgagcatgt gcaaggagtc tcagaagtgt tcagagccca agatggaatg
1321 gaaggtgaaa attaggagcg acgggacacg gtacatcaca aagagacccg tgcgagaccg
1381 aatcctgaag gaacgtgcct taaagatcaa ggaagagcgg agtggcatga ccacagacga
1441 tgacaccatg agcgagatga aaatggggcg ctactggagc aaagaggaga gaaagcagca
1501 cctggttagg gccaaagagc agcgccgtcg ccgtgagttc atgatgcgaa gcaggttaga
1561 gtgtctcaag gagagccctc agagcggcag tgagggcaag aaggagatca atatcattga
1621 actgagtcac aaaaagatga tgaaaaagag aaacaagaaa attttggaca actggatgac
1681 aatccaagaa ctgatgaccc atggggccaa gtctccagat ggcacgagag tccataatgc
1741 cttcttgtcg gtgaccactg tatgaccgaa tgaatggaat gcatgcgact gattttagga
1801 ggatgctacc agtttcggta gagtatgatt gcctcgttca atgtggcgtt tttatatata
1861 ttttgtgact ctttatagtt taaatttttt gtaagcaaaa aatacctggt aatttttcat
1921 ttgtttttca tatactggta ccttcttttt ggctgagatc tttcttttac ttgtgatata
1981 ttcatattac tcgtttataa aaaatcaaaa acaaaaggaa agaaaacaaa aaaaacttgc
2041 acaaaaatac tgaggagcca attaatttcc tacttcaatg tatctaatgt aagtgaaaat
2101 ctggatttat ttctctagtt tacttatttt ctactttaat aataactcaa tgccaaaata
2161 tttctatgct tgtttcttgg cataatacat tttaaatcaa acctgttcgt aataaatcat
2221 gtgccacatc ttgtcttaca cataaaagcc actgctttta acatcccatt gtacatttaa
2281 cacataaatg gtgttaacat cccattgtac atttaacaca taaatggcca ttgtctttgt
2341 ctcagtaaag tgtaagtgga caatcttcct gtgatatgta gtgacattgg tcatgtagct
2401 agataattat ggtaattgtg acaattaaag agaaataaat tattgattat ccttcaaaaa
2461 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaa
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