LOCUS BC040723 1314 bp mRNA linear HUM 16-FEB-2007
DEFINITION Homo sapiens actin filament associated protein 1-like 1, mRNA (cDNA
clone IMAGE:6065491), complete cds.
ACCESSION BC040723
VERSION BC040723.2
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1314)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1314)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (29-NOV-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 25, 2003 this sequence version replaced BC040723.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC/DCTD/DTP
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 89 Row: o Column: 5
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 55742688
This clone has the following problem: The cds is short compared to
the longest cds in the locus.
FEATURES Location/Qualifiers
source 1..1314
/db_xref="H-InvDB:HIT000052449"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:6065491"
/tissue_type="Skin, melanotic melanoma."
/clone_lib="NIH_MGC_72"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1314
/gene="AFAP1L1"
/gene_synonym="FLJ36748"
/db_xref="GeneID:134265"
/db_xref="HGNC:HGNC:26714"
CDS 99..1232
/gene="AFAP1L1"
/gene_synonym="FLJ36748"
/codon_start=1
/product="AFAP1L1 protein"
/protein_id="AAH40723.1"
/db_xref="GeneID:134265"
/db_xref="HGNC:HGNC:26714"
/translation="MDRGQVLEQLLPELTGLLSLLDHEYLSDTTLEKKMAVASILQSL
QPLPAKEVSYLYVNTADLHSGPSFVESLFEEFDCDLSDLRDMPEDDGEPSKGASPELA
KSPRLRNAADLPPPLPNKPPPEDYYEEALPLGPGKSPEYISSHNGCSPSHSIVDGYYE
DADSSYPATRVNGELKSSYNDSDAMSSSYESYDEEEEEGKSPQPRHQWPSEEASMHLV
RECRICAFLLRKKRFGQWAKQLTVIREDQLLCYKSSKDRQPHLRLALDTCSIIYVPKD
SRHKRHELRFTQGATEVLVLALQSREQAEEWLKVIREVSKPVGGAEGVEVPRSPVLLC
KLDLDKVYLSPLSLPQARQWPLNTGSTPGELTGWGESQATAKL"
BASE COUNT 319 a 400 c 387 g 208 t
ORIGIN
1 ccgctgggct ggcctgagag cgcagcgcgc cggccgctac cagccgcgcc ggagcccctg
61 cgccctgcgg cccgctcccc ggggaccggg ccggcgccat ggaccgaggc caggtgctgg
121 agcagctgct cccagagctc accgggctgc tcagcctcct ggaccacgag tacctcagcg
181 ataccaccct ggaaaagaag atggccgtgg cctccatcct gcagagcctg cagccccttc
241 cagcaaagga ggtctcctac ctgtatgtga acacagcaga cctccactcg gggcccagct
301 tcgtggaatc cctctttgaa gaatttgact gtgacctgag tgaccttcgg gacatgccag
361 aggatgatgg ggagcccagc aaaggagcca gccctgagct agccaagagc ccacgcctga
421 gaaacgcggc cgacctgcct ccaccgctcc ccaacaagcc tccccctgag gactactatg
481 aagaggccct tcctctggga cccggcaagt cgcctgagta catcagctcc cacaatggct
541 gcagcccctc acactcgatt gtggatggct actatgagga cgcagacagc agctaccctg
601 caaccagggt gaacggcgag cttaagagct cctataatga ctctgacgca atgagcagct
661 cctatgagtc ctacgatgaa gaggaggagg aagggaagag cccgcagccc cgacaccagt
721 ggccctcaga ggaggcctcc atgcacctgg tgagggaatg caggatatgt gccttcctgc
781 tgcggaaaaa gcgtttcggg cagtgggcca agcagctgac agtcatcagg gaggaccagc
841 tcctgtgtta caaaagctcc aaggatcggc agccacatct gaggttggca ctggatacct
901 gcagcatcat ctacgtgccc aaggacagcc ggcacaagag gcacgagctg cgtttcaccc
961 agggggctac cgaggtcttg gtgctggcac tgcagagccg agagcaggcc gaggagtggc
1021 tgaaggtcat ccgagaagtg agcaagccag ttgggggagc tgagggagtg gaggtcccca
1081 gatccccagt cctcctgtgc aagttggacc tggacaaggt atatctgtct ccactaagtc
1141 ttccccaggc caggcagtgg ccactcaaca cgggctcaac cccaggggaa ctaactggct
1201 ggggggaaag tcaggcaact gccaaactgt aggtgcccag cacagagctg gcacaacagt
1261 aggtgcttaa taaatgtctc ctgaattcaa aaaaaaaaaa aaaaaaaaaa aaaa
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