LOCUS BC040609 2207 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens SUMO1/sentrin/SMT3 specific peptidase 2, mRNA (cDNA
clone MGC:49871 IMAGE:5163937), complete cds.
ACCESSION BC040609
VERSION BC040609.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2207)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2207)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (29-NOV-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Life Technologies, Inc.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 88 Row: c Column: 7
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 54607090.
FEATURES Location/Qualifiers
source 1..2207
/db_xref="H-InvDB:HIT000052435"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:49871 IMAGE:5163937"
/tissue_type="Brain, adult medulla"
/clone_lib="NIH_MGC_119"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..2207
/gene="SENP2"
/gene_synonym="AXAM2"
/gene_synonym="KIAA1331"
/gene_synonym="SMT3IP2"
/db_xref="GeneID:59343"
/db_xref="HGNC:HGNC:23116"
/db_xref="MIM:608261"
CDS 58..1827
/gene="SENP2"
/gene_synonym="AXAM2"
/gene_synonym="KIAA1331"
/gene_synonym="SMT3IP2"
/codon_start=1
/product="SUMO1/sentrin/SMT3 specific peptidase 2"
/protein_id="AAH40609.1"
/db_xref="GeneID:59343"
/db_xref="HGNC:HGNC:23116"
/db_xref="MIM:608261"
/translation="MYRWLVRILGTIFRFCDRSVPPARALLKRRRSDSTLFSTVDTDE
IPAKRPRLDCFIHQVKNSLYNAASLFGFPFQLTTKPMVTSACNGTRNVAPSGEVFSNS
SSCELTGSGSWNNMLKLGNKSPNGISDYPKIRVTVTRDQPRRVLPSFGFTLNSEGCNR
RPGGRRHSKGNPESSLMWKPQEQAVTEMISEESGKGLRRPHCTVEEGVQKEEREKYRK
LLERLKESGHGNSVCPVTSNYHSSQRSQMDTLKTKGWGEEQNHGVKTTQFVPKQYRLV
ETRGPLCSLRSEKRCSKGKITDTETMVGIRFENESRRGYQLEPDLSEEVSARLRLGSG
SNGLLRRKVSIIETKEKNCSGKERDRRTDDLLELTEDMEKEISNALGHGPQDEILSSA
FKLRITRGDIQTLKNYHWLNDEVINFYMNLLVERNKKQGYPALHVFSTFFYPKLKSGG
YQAVKRWTKGVNLFEQEIILVPIHRKVHWSLVVIDLRKKCLKYLDSMGQKGHRICEIL
LQYLQDESKTKRNSDLNLLEWTHHSMKPHEIPQQLNGSDCGMFTCKYADYISRDKPIT
FTQHQMPLFRKKMVWEILHQQLL"
BASE COUNT 704 a 432 c 522 g 549 t
ORIGIN
1 cagctctggg gtttgcgtct cggggtgtgt cggccgccgc tgctgcttgg gcctggtatg
61 tacagatggc tggttaggat tctcggcacc attttccgtt tctgcgaccg gtcggtgccc
121 cctgcccggg ccctcctgaa gaggcggcgc tcagacagca ctctgttttc tacagtggac
181 actgatgaaa taccagccaa aagaccaaga ttagattgct ttattcacca agtgaaaaac
241 agtctctaca atgctgccag cttatttgga ttcccattcc agctgaccac aaagcccatg
301 gtaacttctg cttgtaatgg aacacggaat gtggcccctt caggagaggt attttcgaac
361 tcttcatctt gtgaactgac aggttctgga tcctggaaca acatgctgaa actgggtaat
421 aaatctccta atggaataag tgactatcca aagatcagag tgacagttac ccgagatcag
481 ccacgcagag tcctgccttc ctttggtttt actttgaact cagaaggctg taatagaaga
541 ccaggtggcc gtcgccatag caaaggtaat ccagagagtt ctttaatgtg gaaacctcag
601 gaacaggctg taacagagat gatttctgaa gagagtggca agggtctgag gcgtccccat
661 tgtactgtgg aggagggtgt tcaaaaagag gaaagagaga agtaccgaaa gttattggaa
721 cgacttaaag aaagtggtca tggaaactct gtctgtcctg taacttcaaa ttatcacagt
781 tctcaaagaa gtcagatgga cacattaaag accaaaggct ggggggaaga gcaaaatcac
841 ggagtcaaaa caactcagtt tgttccaaaa caatatagac ttgttgaaac aaggggacct
901 ctatgttcat tgagaagtga aaagaggtgt tcaaagggga aaattactga tacagagacg
961 atggtcggaa tcagatttga aaatgaaagt aggaggggat accaactgga gcctgaccta
1021 tcagaagaag tgtcggcccg actccgcctg ggcagtggaa gcaatggctt actcaggagg
1081 aaagtgtcaa taattgagac aaaggaaaag aattgctcag gcaaagagag ggacagaaga
1141 acggacgatc tccttgaact tacagaggac atggaaaagg aaatcagtaa tgccctaggc
1201 catggcccac aggatgaaat cctaagtagt gctttcaaat tgcgaattac tcgaggagat
1261 attcagacat taaagaacta tcactggctc aatgatgaag tcattaattt ttacatgaat
1321 cttctggtgg aaagaaataa aaagcaaggc tatccagcac ttcatgtatt cagtactttc
1381 ttctatccta aattaaagtc tgggggttac caagcagtga aacgatggac caaaggggta
1441 aatctctttg aacaagaaat tattctggtg cctattcatc ggaaggtaca ttggagcctg
1501 gtggtgattg acctaagaaa aaagtgtctt aaatatctgg attctatggg acaaaagggc
1561 cacaggatct gtgagattct ccttcagtat ttacaggatg aaagtaagac caaaagaaat
1621 agtgatctga atcttttaga gtggacccat cacagcatga aaccacacga gattcctcaa
1681 cagctgaatg ggagtgattg tggaatgttt acttgtaaat atgcagatta tatttctagg
1741 gacaaaccta tcacatttac tcagcaccag atgcctctct tccggaagaa gatggtgtgg
1801 gaaatccttc atcagcagtt gctgtgagaa aactttgcct ggtccctcta gctgctggtg
1861 gttctttcac agacatttcc atatacctca tgcattgtgg gttaaaaagt ccctgcatca
1921 cttctgttct cacaggtact gagctgtcaa aagtgcatga aggcctctca ctgtactcta
1981 gtcctgactt ggggtgcaga gggctgcttg caatcctgtt tgtaaggctg tgcctgctca
2041 gagctttgga ctgttcaacc cacacaagaa caaacgctaa ctaatatttt ttttaagaga
2101 ttcttttccc tatgaatgtg ggaaatgcag gatttattct gtgaaaaaaa aaaaaaaaaa
2161 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaa
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