LOCUS BC040566 3343 bp mRNA linear HUM 28-JUL-2005
DEFINITION Homo sapiens synaptonemal complex protein 2, mRNA (cDNA clone
IMAGE:5267059), partial cds.
ACCESSION BC040566
VERSION BC040566.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3343)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3343)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (29-NOV-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 74 Row: a Column: 22
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 38373672.
FEATURES Location/Qualifiers
source 1..3343
/db_xref="H-InvDB:HIT000096226"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:5267059"
/tissue_type="Testis"
/clone_lib="NIH_MGC_97"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..>3343
/gene="SYCP2"
/gene_synonym="SCP2"
/db_xref="GeneID:10388"
/db_xref="MIM:604105"
CDS 271..>3343
/gene="SYCP2"
/gene_synonym="SCP2"
/codon_start=1
/product="SYCP2 protein"
/protein_id="AAH40566.1"
/db_xref="GeneID:10388"
/db_xref="MIM:604105"
/translation="MPIRPDLQQLEKCIDDALRKNDFKPLKTLLQIDICEDVKIKCSK
QFFHKVDNLICRELNKEDIHNVSAILVSVGRCGKNISVLGQAGLLTMIKQGLIQKMVA
WFEKSKDIIQSQGNSKDEAVLNMIEDLVDLLLVIHDVSDEGKKQVVESFVPRICSLVI
DSRVNICIQQEIIKKMNAMLDKMPQDARKILSNQEMLILMSSMGERILDAGDYDLQVG
IVEALCRMTTEKQRQELAHQWFSMDFIAKAFKRIKDSEFETDCRIFLNLVNGMLGDKR
RVFTFPCLSAFLDKYELQIPSDEKLEEFWIDFNLGSQTLSFYIAGDNDDHQWEAVTVP
EEKVQIYSIEVRESKKLLTIILKNTVKISKREGKELLLYFDASLEITNVTQKIFGATK
HRESIRKQGISVAKTSLHILFDASGSQILVPESQISPVGEELVSLKEKSKSPKEFAKP
SKYIKNSDKGNRNNSQLEKTTPSKRKMSEASMIVSGADRYTMRSPVLFSNTSIPPRRR
RIKPPLQMTSSAEKPSVSQTSENRVDNAASLKSRSSEGRHRRDNIDKHIKTAKCVENT
ENKNVEFPNQNFSELQDVIPDSQAAEKRDHTILPGVLDNICGNKIHSKWACWTPVTNI
ELCNNQRASTSSGDTLNQDIVINKKLTKQKSSSSISDHNSEGTGKVKYKKEQTDHIKI
DKAEVEVCKKHNQQQNHPKYSGQKNTENAKQSDWPVESETTFKSVLLNKTIEESLIYR
KKYILSKDVNTATCDKNPSASKNVQSHRKAEKELTSELNSWDSKQKKMREKSKGKEFT
NVAESLISQINKRYKTKDDIKSTRKLKESLINSGFSNKPVVQLSKEKVQKKSYRKLKT
TFVNVTSECPVNDVYNFNLNGADDPIIKLGIQEFQATAKEACADRSIRLVGPRNHDEL
KSSVKTKDKKIITNHQKKNLFSDTETEYRCDDSKTDISWLREPKSKPQLIDYSRNKNV
KNHKSGKSRSSLEKGQPSSKMTPSKNITKKMDKTIPEGRIRLPRKATKKKKK"
BASE COUNT 1296 a 556 c 656 g 835 t
ORIGIN
1 tgcagagttc gcggcgaggg tggctcgcgc aggcgcgagg ctccccatca gcacctgcct
61 ggccagcctc ggcctcgggg atgggaaatg ggcgctcgga gccgcccccg cgcgtgggcg
121 actcggtcaa gatacacaat catcatctta ctagttctct gtgttgctcg ctaaccagtc
181 ccccagttca gtagactgga gcccagagcc tgcttacttg tcaggtgttt attttgtctt
241 gctttttttt tttttttaaa tgaagtcaaa atgccaataa gaccagatct ccagcagttg
301 gaaaaatgca ttgatgatgc tttaagaaaa aatgatttca aacctttgaa aacacttttg
361 caaattgata tttgtgaaga tgtgaagatt aaatgcagca aacagttttt ccacaaggtg
421 gacaacctta tatgcaggga acttaataaa gaggatatcc acaatgtttc agccattttg
481 gtttctgttg gaagatgtgg caaaaatatc agtgtattgg ggcaagctgg acttctaacg
541 atgataaaac aaggactaat acaaaagatg gttgcctggt ttgaaaaatc caaggacatt
601 attcagagtc aaggaaattc aaaagatgaa gctgttctaa atatgataga agacttagtt
661 gatcttctgc tggtcataca tgatgtcagt gatgaaggta aaaaacaagt agtggaaagt
721 ttcgtacctc gcatttgttc cctggttatt gactcaagag tgaatatttg tattcagcaa
781 gagattataa aaaaaatgaa tgctatgctt gacaaaatgc ctcaagatgc ccggaaaata
841 ctctctaacc aagaaatgtt aattctcatg agtagtatgg gagaaaggat tttagatgct
901 ggagattatg acttacaggt aggcattgta gaagctttgt gtagaatgac cacagaaaaa
961 caaagacaag aactggcaca tcagtggttt tcaatggatt ttattgctaa ggcatttaaa
1021 agaattaagg actctgaatt tgaaacagat tgcaggatat ttctcaacct tgtaaatggc
1081 atgcttggag acaaaagaag ggtctttaca tttccttgtt tatcagcatt tcttgataaa
1141 tatgagctgc aaataccatc agatgaaaaa cttgaggaat tttggattga ttttaatctt
1201 gggagtcaga ctctctcatt ctacattgct ggagataatg atgatcatca atgggaagca
1261 gttactgtgc cagaggaaaa agtacaaata tacagcattg aagtgagaga atcaaagaag
1321 ctactgacaa taattctgaa aaatacagta aaaattagca aaagagaagg gaaagaattg
1381 cttttgtatt ttgacgcatc actagaaatc actaatgtaa ctcaaaaaat ttttggtgca
1441 actaaacata gggaatctat cagaaaacaa ggtatttcag ttgccaaaac gtcgctgcat
1501 atactttttg acgcaagtgg atcacagatt ctagtgccag aaagtcaaat ctcaccagtc
1561 ggagaagagc tcgttagttt aaaggaaaaa tcaaagtccc caaaggaatt tgctaaacct
1621 tcaaaatata tcaaaaacag tgacaaaggg aatagaaata atagtcagct tgagaaaact
1681 actcctagca aaagaaaaat gtctgaagca tcaatgattg tttctggtgc agatagatac
1741 actatgagaa gtccagtgct tttcagcaac acatcaatac caccacgaag aagaagaatt
1801 aaaccaccac tgcaaatgac gagctctgca gagaaaccta gtgtttctca aacatcagaa
1861 aatagagtgg ataatgctgc atcactgaaa tctagatcat cagaaggaag acatagaaga
1921 gataatatag acaaacatat caaaactgct aagtgtgtag aaaacacaga aaataagaat
1981 gttgaattcc caaaccaaaa ttttagtgaa ctccaggatg ttataccaga ttcacaggca
2041 gcggaaaaaa gagatcatac tatattacct ggtgttttag acaacatctg tggaaataaa
2101 atacacagca aatgggcatg ttggacacct gtaacaaaca ttgaactatg taataaccaa
2161 agagcaagta cttcgtcagg agacacattg aatcaagata ttgttataaa taaaaaactt
2221 actaaacaaa aatcatcctc ttcaatatct gatcataatt ctgaaggaac aggaaaagtg
2281 aaatataaga aagaacaaac cgaccatatc aaaatagata aagcagaagt agaagtttgc
2341 aagaaacaca atcagcaaca aaatcatcct aaatattcag ggcagaaaaa tactgaaaat
2401 gccaagcaga gtgattggcc tgttgaatct gaaactactt ttaaatcggt tctcctaaat
2461 aagacaattg aagaatcgct gatatatagg aagaaataca tattgtcaaa agatgtgaat
2521 actgctactt gcgataaaaa tccatctgct agcaaaaatg tgcaaagtca tagaaaagca
2581 gagaaagaat tgacttctga gcttaattcc tgggattcga aacaaaaaaa aatgagagaa
2641 aagtcaaaag ggaaagaatt taccaatgta gcagaatcct tgataagcca aatcaataaa
2701 agatacaaaa caaaagatga catcaagtct acaagaaaat taaaggagtc tttgattaac
2761 agtggttttt caaacaaacc tgttgtacaa ctcagtaagg aaaaagttca gaaaaaaagc
2821 tacagaaaac tgaagactac ctttgttaat gttacttctg aatgcccagt gaatgatgtt
2881 tacaatttta atttgaatgg agctgatgac cctatcataa aacttggaat ccaagagttt
2941 caagctacag ctaaagaagc ttgtgcggat aggtcaatta gattggtagg tccaaggaat
3001 catgatgaac ttaaatcttc tgtcaaaaca aaagataaaa aaattataac aaatcatcaa
3061 aagaaaaatc tgtttagtga tactgaaaca gagtacagat gtgatgacag caagactgat
3121 attagctggc taagagaacc gaaatcaaaa ccacagctaa tagactatag cagaaataaa
3181 aatgtgaaga atcataaaag tggaaaatca agatcatcct tggaaaaggg acagccaagc
3241 tctaaaatga cacccagtaa aaatatcaca aaaaagatgg acaagacaat tccggaagga
3301 agaatcagac ttccacgaaa agcaaccaaa aaaaaaaaaa aaa
//