LOCUS BC040566 3343 bp mRNA linear HUM 28-JUL-2005 DEFINITION Homo sapiens synaptonemal complex protein 2, mRNA (cDNA clone IMAGE:5267059), partial cds. ACCESSION BC040566 VERSION BC040566.1 KEYWORDS . SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 3343) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 3343) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (29-NOV-2002) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Miklos Palkovits, M.D., Ph.D. cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki Toshiyuki and Piero Carninci (RIKEN) cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Sequencing Group at the Stanford Human Genome Center, Stanford University School of Medicine, Stanford, CA 94305 Web site: http://www-shgc.stanford.edu Contact: (Dickson, Mark) mcd@paxil.stanford.edu Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, R. M. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 74 Row: a Column: 22 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 38373672. FEATURES Location/Qualifiers source 1..3343 /db_xref="H-InvDB:HIT000096226" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="IMAGE:5267059" /tissue_type="Testis" /clone_lib="NIH_MGC_97" /lab_host="DH10B" /note="Vector: pBluescriptR" gene 1..>3343 /gene="SYCP2" /gene_synonym="SCP2" /db_xref="GeneID:10388" /db_xref="MIM:604105" CDS 271..>3343 /gene="SYCP2" /gene_synonym="SCP2" /codon_start=1 /product="SYCP2 protein" /protein_id="AAH40566.1" /db_xref="GeneID:10388" /db_xref="MIM:604105" /translation="MPIRPDLQQLEKCIDDALRKNDFKPLKTLLQIDICEDVKIKCSK QFFHKVDNLICRELNKEDIHNVSAILVSVGRCGKNISVLGQAGLLTMIKQGLIQKMVA WFEKSKDIIQSQGNSKDEAVLNMIEDLVDLLLVIHDVSDEGKKQVVESFVPRICSLVI DSRVNICIQQEIIKKMNAMLDKMPQDARKILSNQEMLILMSSMGERILDAGDYDLQVG IVEALCRMTTEKQRQELAHQWFSMDFIAKAFKRIKDSEFETDCRIFLNLVNGMLGDKR RVFTFPCLSAFLDKYELQIPSDEKLEEFWIDFNLGSQTLSFYIAGDNDDHQWEAVTVP EEKVQIYSIEVRESKKLLTIILKNTVKISKREGKELLLYFDASLEITNVTQKIFGATK HRESIRKQGISVAKTSLHILFDASGSQILVPESQISPVGEELVSLKEKSKSPKEFAKP SKYIKNSDKGNRNNSQLEKTTPSKRKMSEASMIVSGADRYTMRSPVLFSNTSIPPRRR RIKPPLQMTSSAEKPSVSQTSENRVDNAASLKSRSSEGRHRRDNIDKHIKTAKCVENT ENKNVEFPNQNFSELQDVIPDSQAAEKRDHTILPGVLDNICGNKIHSKWACWTPVTNI ELCNNQRASTSSGDTLNQDIVINKKLTKQKSSSSISDHNSEGTGKVKYKKEQTDHIKI DKAEVEVCKKHNQQQNHPKYSGQKNTENAKQSDWPVESETTFKSVLLNKTIEESLIYR KKYILSKDVNTATCDKNPSASKNVQSHRKAEKELTSELNSWDSKQKKMREKSKGKEFT NVAESLISQINKRYKTKDDIKSTRKLKESLINSGFSNKPVVQLSKEKVQKKSYRKLKT TFVNVTSECPVNDVYNFNLNGADDPIIKLGIQEFQATAKEACADRSIRLVGPRNHDEL KSSVKTKDKKIITNHQKKNLFSDTETEYRCDDSKTDISWLREPKSKPQLIDYSRNKNV KNHKSGKSRSSLEKGQPSSKMTPSKNITKKMDKTIPEGRIRLPRKATKKKKK" BASE COUNT 1296 a 556 c 656 g 835 t ORIGIN 1 tgcagagttc gcggcgaggg tggctcgcgc aggcgcgagg ctccccatca gcacctgcct 61 ggccagcctc ggcctcgggg atgggaaatg ggcgctcgga gccgcccccg cgcgtgggcg 121 actcggtcaa gatacacaat catcatctta ctagttctct gtgttgctcg ctaaccagtc 181 ccccagttca gtagactgga gcccagagcc tgcttacttg tcaggtgttt attttgtctt 241 gctttttttt tttttttaaa tgaagtcaaa atgccaataa gaccagatct ccagcagttg 301 gaaaaatgca ttgatgatgc tttaagaaaa aatgatttca aacctttgaa aacacttttg 361 caaattgata tttgtgaaga tgtgaagatt aaatgcagca aacagttttt ccacaaggtg 421 gacaacctta tatgcaggga acttaataaa gaggatatcc acaatgtttc agccattttg 481 gtttctgttg gaagatgtgg caaaaatatc agtgtattgg ggcaagctgg acttctaacg 541 atgataaaac aaggactaat acaaaagatg gttgcctggt ttgaaaaatc caaggacatt 601 attcagagtc aaggaaattc aaaagatgaa gctgttctaa atatgataga agacttagtt 661 gatcttctgc tggtcataca tgatgtcagt gatgaaggta aaaaacaagt agtggaaagt 721 ttcgtacctc gcatttgttc cctggttatt gactcaagag tgaatatttg tattcagcaa 781 gagattataa aaaaaatgaa tgctatgctt gacaaaatgc ctcaagatgc ccggaaaata 841 ctctctaacc aagaaatgtt aattctcatg agtagtatgg gagaaaggat tttagatgct 901 ggagattatg acttacaggt aggcattgta gaagctttgt gtagaatgac cacagaaaaa 961 caaagacaag aactggcaca tcagtggttt tcaatggatt ttattgctaa ggcatttaaa 1021 agaattaagg actctgaatt tgaaacagat tgcaggatat ttctcaacct tgtaaatggc 1081 atgcttggag acaaaagaag ggtctttaca tttccttgtt tatcagcatt tcttgataaa 1141 tatgagctgc aaataccatc agatgaaaaa cttgaggaat tttggattga ttttaatctt 1201 gggagtcaga ctctctcatt ctacattgct ggagataatg atgatcatca atgggaagca 1261 gttactgtgc cagaggaaaa agtacaaata tacagcattg aagtgagaga atcaaagaag 1321 ctactgacaa taattctgaa aaatacagta aaaattagca aaagagaagg gaaagaattg 1381 cttttgtatt ttgacgcatc actagaaatc actaatgtaa ctcaaaaaat ttttggtgca 1441 actaaacata gggaatctat cagaaaacaa ggtatttcag ttgccaaaac gtcgctgcat 1501 atactttttg acgcaagtgg atcacagatt ctagtgccag aaagtcaaat ctcaccagtc 1561 ggagaagagc tcgttagttt aaaggaaaaa tcaaagtccc caaaggaatt tgctaaacct 1621 tcaaaatata tcaaaaacag tgacaaaggg aatagaaata atagtcagct tgagaaaact 1681 actcctagca aaagaaaaat gtctgaagca tcaatgattg tttctggtgc agatagatac 1741 actatgagaa gtccagtgct tttcagcaac acatcaatac caccacgaag aagaagaatt 1801 aaaccaccac tgcaaatgac gagctctgca gagaaaccta gtgtttctca aacatcagaa 1861 aatagagtgg ataatgctgc atcactgaaa tctagatcat cagaaggaag acatagaaga 1921 gataatatag acaaacatat caaaactgct aagtgtgtag aaaacacaga aaataagaat 1981 gttgaattcc caaaccaaaa ttttagtgaa ctccaggatg ttataccaga ttcacaggca 2041 gcggaaaaaa gagatcatac tatattacct ggtgttttag acaacatctg tggaaataaa 2101 atacacagca aatgggcatg ttggacacct gtaacaaaca ttgaactatg taataaccaa 2161 agagcaagta cttcgtcagg agacacattg aatcaagata ttgttataaa taaaaaactt 2221 actaaacaaa aatcatcctc ttcaatatct gatcataatt ctgaaggaac aggaaaagtg 2281 aaatataaga aagaacaaac cgaccatatc aaaatagata aagcagaagt agaagtttgc 2341 aagaaacaca atcagcaaca aaatcatcct aaatattcag ggcagaaaaa tactgaaaat 2401 gccaagcaga gtgattggcc tgttgaatct gaaactactt ttaaatcggt tctcctaaat 2461 aagacaattg aagaatcgct gatatatagg aagaaataca tattgtcaaa agatgtgaat 2521 actgctactt gcgataaaaa tccatctgct agcaaaaatg tgcaaagtca tagaaaagca 2581 gagaaagaat tgacttctga gcttaattcc tgggattcga aacaaaaaaa aatgagagaa 2641 aagtcaaaag ggaaagaatt taccaatgta gcagaatcct tgataagcca aatcaataaa 2701 agatacaaaa caaaagatga catcaagtct acaagaaaat taaaggagtc tttgattaac 2761 agtggttttt caaacaaacc tgttgtacaa ctcagtaagg aaaaagttca gaaaaaaagc 2821 tacagaaaac tgaagactac ctttgttaat gttacttctg aatgcccagt gaatgatgtt 2881 tacaatttta atttgaatgg agctgatgac cctatcataa aacttggaat ccaagagttt 2941 caagctacag ctaaagaagc ttgtgcggat aggtcaatta gattggtagg tccaaggaat 3001 catgatgaac ttaaatcttc tgtcaaaaca aaagataaaa aaattataac aaatcatcaa 3061 aagaaaaatc tgtttagtga tactgaaaca gagtacagat gtgatgacag caagactgat 3121 attagctggc taagagaacc gaaatcaaaa ccacagctaa tagactatag cagaaataaa 3181 aatgtgaaga atcataaaag tggaaaatca agatcatcct tggaaaaggg acagccaagc 3241 tctaaaatga cacccagtaa aaatatcaca aaaaagatgg acaagacaat tccggaagga 3301 agaatcagac ttccacgaaa agcaaccaaa aaaaaaaaaa aaa //