LOCUS BC040540 4782 bp mRNA linear HUM 04-AUG-2008 DEFINITION Homo sapiens retinoblastoma 1, mRNA (cDNA clone MGC:39656 IMAGE:5267622), complete cds. ACCESSION BC040540 VERSION BC040540.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 4782) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 4782) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (29-NOV-2002) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Miklos Palkovits, M.D., Ph.D. cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki Toshiyuki and Piero Carninci (RIKEN) cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Sequencing Group at the Stanford Human Genome Center, Stanford University School of Medicine, Stanford, CA 94305 Web site: http://www-shgc.stanford.edu Contact: (Dickson, Mark) mcd@paxil.stanford.edu Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, R. M. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 63 Row: f Column: 2 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 4506434. FEATURES Location/Qualifiers source 1..4782 /db_xref="H-InvDB:HIT000052423" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:39656 IMAGE:5267622" /tissue_type="Testis" /clone_lib="NIH_MGC_97" /lab_host="DH10B" /note="Vector: pBluescriptR" gene 1..4782 /gene="RB1" /gene_synonym="p105-Rb" /gene_synonym="pp110" /gene_synonym="pRb" /gene_synonym="RB" /db_xref="GeneID:5925" /db_xref="HGNC:HGNC:9884" /db_xref="MIM:180200" CDS 163..2949 /gene="RB1" /gene_synonym="p105-Rb" /gene_synonym="pp110" /gene_synonym="pRb" /gene_synonym="RB" /codon_start=1 /product="retinoblastoma 1" /protein_id="AAH40540.1" /db_xref="GeneID:5925" /db_xref="HGNC:HGNC:9884" /db_xref="MIM:180200" /translation="MPPKTPRKTAATAAAAAAEPPAPPPPPPPEEDPEQDSGPEDLPL VRLEFEETEEPDFTALCQKLKIPDHVRERAWLTWEKVSSVDGVLGGYIQKKKELWGIC IFIAAVDLDEMSFTFTELQKNIEISVHKFFNLLKEIDTSTKVDNAMSRLLKKYDVLFA LFSKLERTCELIYLTQPSSSISTEINSALVLKVSWITFLLAKGEVLQMEDDLVISFQL MLCVLDYFIKLSPPMLLKEPYKTAVIPINGSPRTPRRGQNRSARIAKQLENDTRIIEV LCKEHECNIDEVKNVYFKNFIPFMNSLGLVTSNGLPEVENLSKRYEEIYLKNKDLDAR LFLDHDKTLQTDSIDSFETQRTPRKSNLDEEVNVIPPHTPVRTVMNTIQQLMMILNSA SDQPSENLISYFNNCTVNPKESILKRVKDIGYIFKEKFAKAVGQGCVEIGSQRYKLGV RLYYRVMESMLKSEEERLSIQNFSKLLNDNIFHMSLLACALEVVMATYSRSTSQNLDS GTDLSFPWILNVLNLKAFDFYKVIESFIKAEGNLTREMIKHLERCEHRIMESLAWLSD SPLFDLIKQSKDREGPTDHLESACPLNLPLQNNHTAADMYLSPVRSPKKKGSTTRVNS TANAETQATSAFQTQKPLKSTSLSLFYKKVYRLAYLRLNTLCERLLSEHPELEHIIWT LFQHTLQNEYELMRDRHLDQIMMCSMYGICKVKNIDLKFKIIVTAYKDLPHAVQETFK RVLIKEEEYDSIIVFYNSVFMQRLKTNILQYASTRPPTLSPIPHIPRSPYKFPSSPLR IPGGNIYISPLKSPYKISEGLPTPTKMTPRSRILVSIGESFGTSEKFQKINQMVCNSD RVLKRSAEGSNPPKPLKKLRFDIEGSDEADGSKHLPGESKFQQKLAEMTSTRTRMQKQ KMNDSMDTSNKEEK" BASE COUNT 1526 a 892 c 877 g 1487 t ORIGIN 1 tgttgccggg cgggggaggg cgcgtccggt ttttctcagg ggacgttgaa attatttttg 61 taacgggagt cgggagagga cggggcgtgc cccgacgtgc gcgcgcgtcg tcctccccgg 121 cgctcctcca cagctcgctg gctcccgccg cggaaaggcg tcatgccgcc caaaaccccc 181 cgaaaaacgg ccgccaccgc cgccgctgcc gccgcggaac ccccggcacc gccgccgccg 241 ccccctcctg aggaggaccc agagcaggac agcggcccgg aggacctgcc tctcgtcagg 301 cttgagtttg aagaaacaga agaacctgat tttactgcat tatgtcagaa attaaagata 361 ccagatcatg tcagagagag agcttggtta acttgggaga aagtttcatc tgtggatgga 421 gtattgggag gttatattca aaagaaaaag gaactgtggg gaatctgtat ctttattgca 481 gcagttgacc tagatgagat gtcgttcact tttactgagc tacagaaaaa catagaaatc 541 agtgtccata aattctttaa cttactaaaa gaaattgata ccagtaccaa agttgataat 601 gctatgtcaa gactgttgaa gaagtatgat gtattgtttg cactcttcag caaattggaa 661 aggacatgtg aacttatata tttgacacaa cccagcagtt cgatatctac tgaaataaat 721 tctgcattgg tgctaaaagt ttcttggatc acatttttat tagctaaagg ggaagtatta 781 caaatggaag atgatctggt gatttcattt cagttaatgc tatgtgtcct tgactatttt 841 attaaactct cacctcccat gttgctcaaa gaaccatata aaacagctgt tatacccatt 901 aatggttcac ctcgaacacc caggcgaggt cagaacagga gtgcacggat agcaaaacaa 961 ctagaaaatg atacaagaat tattgaagtt ctctgtaaag aacatgaatg taatatagat 1021 gaggtgaaaa atgtttattt caaaaatttt atacctttta tgaattctct tggacttgta 1081 acatctaatg gacttccaga ggttgaaaat ctttctaaac gatacgaaga aatttatctt 1141 aaaaataaag atctagatgc aagattattt ttggatcatg ataaaactct tcagactgat 1201 tctatagaca gttttgaaac acagagaaca ccacgaaaaa gtaaccttga tgaagaggtg 1261 aatgtaattc ctccacacac tccagttagg actgttatga acactatcca acaattaatg 1321 atgattttaa attcagcaag tgatcaacct tcagaaaatc tgatttccta ttttaacaac 1381 tgcacagtga atccaaaaga aagtatactg aaaagagtga aggatatagg atacatcttt 1441 aaagagaaat ttgctaaagc tgtgggacag ggttgtgtcg aaattggatc acagcgatac 1501 aaacttggag ttcgcttgta ttaccgagta atggaatcca tgcttaaatc agaagaagaa 1561 cgattatcca ttcaaaattt tagcaaactt ctgaatgaca acatttttca tatgtcttta 1621 ttggcgtgcg ctcttgaggt tgtaatggcc acatatagca gaagtacatc tcagaatctt 1681 gattctggaa cagatttgtc tttcccatgg attctgaatg tgcttaattt aaaagccttt 1741 gatttttaca aagtgatcga aagttttatc aaagcagaag gcaacttgac aagagaaatg 1801 ataaaacatt tagaacgatg tgaacatcga atcatggaat cccttgcatg gctctcagat 1861 tcacctttat ttgatcttat taaacaatca aaggaccgag aaggaccaac tgatcacctt 1921 gaatctgctt gtcctcttaa tcttcctctc cagaataatc acactgcagc agatatgtat 1981 ctttctcctg taagatctcc aaagaaaaaa ggttcaacta cgcgtgtaaa ttctactgca 2041 aatgcagaga cacaagcaac ctcagccttc cagacccaga agccattgaa atctacctct 2101 ctttcactgt tttataaaaa agtgtatcgg ctagcctatc tccggctaaa tacactttgt 2161 gaacgccttc tgtctgagca cccagaatta gaacatatca tctggaccct tttccagcac 2221 accctgcaga atgagtatga actcatgaga gacaggcatt tggaccaaat tatgatgtgt 2281 tccatgtatg gcatatgcaa agtgaagaat atagacctta aattcaaaat cattgtaaca 2341 gcatacaagg atcttcctca tgctgttcag gagacattca aacgtgtttt gatcaaagaa 2401 gaggagtatg attctattat agtattctat aactcggtct tcatgcagag actgaaaaca 2461 aatattttgc agtatgcttc caccaggccc cctaccttgt caccaatacc tcacattcct 2521 cgaagccctt acaagtttcc tagttcaccc ttacggattc ctggagggaa catctatatt 2581 tcacccctga agagtccata taaaatttca gaaggtctgc caacaccaac aaaaatgact 2641 ccaagatcaa gaatcttagt atcaattggt gaatcattcg ggacttctga gaagttccag 2701 aaaataaatc agatggtatg taacagcgac cgtgtgctca aaagaagtgc tgaaggaagc 2761 aaccctccta aaccactgaa aaaactacgc tttgatattg aaggatcaga tgaagcagat 2821 ggaagtaaac atctcccagg agagtccaaa tttcagcaga aactggcaga aatgacttct 2881 actcgaacac gaatgcaaaa gcagaaaatg aatgatagca tggatacctc aaacaaggaa 2941 gagaaatgag gatctcagga ccttggtgga cactgtgtac acctctggat tcattgtctc 3001 tcacagatgt gactgtataa ctttcccagg ttctgtttat ggccacattt aatatcttca 3061 gctctttttg tggatataaa atgtgcagat gcaattgttt gggtgattcc taagccactt 3121 gaaatgttag tcattgttat ttatacaaga ttgaaaatct tgtgtaaatc ctgccattta 3181 aaaagttgta gcagattgtt tcctcttcca aagtaaaatt gctgtgcttt atggatagta 3241 agaatggccc tagagtggga gtcctgataa cccaggcctg tctgactact ttgccttctt 3301 ttgtagcata taggtgatgt ttgctcttgt ttttattaat ttatatgtat atttttttaa 3361 tttaacatga acacccttag aaaatgtgtc ctatctatct tccaaatgca atttgattga 3421 ctgcccattc accaaaatta tcctgaactc ttctgcaaaa atggatatta ttagaaatta 3481 gaaaaaaatt actaatttta cacattagat tttattttac tattggaatc tgatatactg 3541 tgtgcttgtt ttataaaatt ttgcttttaa ttaaataaaa gctggaagca aagtataacc 3601 atatgatact atcatactac tgaaacagat ttcatacctc agaatgtaaa agaacttact 3661 gattattttc ttcatccaac ttatgttttt aaatgaggat tattgatagt actcttggtt 3721 tttataccat tcagatcact gaatttataa agtacccatc tagtacttga aaaagtaaag 3781 tgttctgcca gatcttaggt atagaggacc ctaacacagt atatcccaag tgcactttct 3841 aatgtttctg ggtcctgaag aattaagata caaattaatt ttactccata aacagactgt 3901 taattatagg agccttaatt tttttttcat agagatttgt ctaattgcat ctcaaaatta 3961 ttctgccctc cttaatttgg gaaggtttgt gttttctctg gaatggtaca tgtcttccat 4021 gtatcttttg aactggcaat tgtctattta tcttttattt ttttaagtca gtatggtcta 4081 acactggcat gttcaaagcc acattatttc tagtccaaaa ttacaagtaa tcaagggtca 4141 ttatgggtta ggcattaatg tttctatctg attttgtgca aaagcttcaa attaaaacag 4201 ctgcattaga aaaagaggcg cttctcccct cccctacacc taaaggtgta tttaaactat 4261 cttgtgtgat taacttattt agagatgctg taacttaaaa taggggatat ttaaggtagc 4321 ttcagctagc ttttaggaaa atcactttgt ctaactcaga attattttta aaaagaaatc 4381 tggtcttgtt agaaaacaaa attttatttt gtgctcattt aagtttcaaa cttactattt 4441 tgacagttat tttgataaca atgacactag aaaacttgac tccatttcat cattgtttct 4501 gcatgaatat catacaaatc agttagtttt taggtcaagg gcttactatt tctgggtctt 4561 ttgctactaa gttcacatta gaattagtgc cagaatttta ggaacttcag agatcgtgta 4621 ttgagatttc ttaaataatg cttcagatat tattgcttta ttgctttttt gtattggtta 4681 aaactgtaca tttaaaattg ctatgttact attttctaca attaatagtt tgtctatttt 4741 aaaataaatt agttgttaag agtctcaaaa aaaaaaaaaa aa //