LOCUS BC040523 5011 bp mRNA linear HUM 17-JUL-2006
DEFINITION Homo sapiens CCR4-NOT transcription complex, subunit 1, mRNA (cDNA
clone MGC:39516 IMAGE:5266600), complete cds.
ACCESSION BC040523
VERSION BC040523.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 5011)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 5011)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (29-NOV-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 63 Row: f Column: 19
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 46275836.
FEATURES Location/Qualifiers
source 1..5011
/db_xref="H-InvDB:HIT000052414"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:39516 IMAGE:5266600"
/tissue_type="Testis"
/clone_lib="NIH_MGC_97"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..5011
/gene="CNOT1"
/gene_synonym="AD-005"
/gene_synonym="CDC39"
/gene_synonym="KIAA1007"
/gene_synonym="NOT1H"
/db_xref="GeneID:23019"
/db_xref="HGNC:HGNC:7877"
/db_xref="MIM:604917"
CDS 286..4941
/gene="CNOT1"
/gene_synonym="AD-005"
/gene_synonym="CDC39"
/gene_synonym="KIAA1007"
/gene_synonym="NOT1H"
/codon_start=1
/product="CCR4-NOT transcription complex, subunit 1"
/protein_id="AAH40523.1"
/db_xref="GeneID:23019"
/db_xref="HGNC:HGNC:7877"
/db_xref="MIM:604917"
/translation="MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEAD
RHLLRCLFSHVDFSGDGKSSGKDFHQTQFLIQECALLITKPNFISTLSYAIDNPLHYQ
KSLKPAPHLFAQLSKVLKLSKVQEVIFGLALLNSSSSDLRGFAAQFIKQKLPDLLRSY
IDADVSGNQEGGFQDIAIEVLHLLLSHLLFGQKGAFGVGQEQIDAFLKTLRRDFPQER
CPVVLAPLLYPEKRDILMDRILPDSGGVAKTMMESSLADFMQEVGYGFCASIEECRNI
IVQFGVREVTAAQVARVLGMMARTHSGLTDGIPLQSISAPGSGIWSDGKDKSDGAQAH
TWNVEVLIDVLKELNPSLNFKEVTYELDHPGFQIRDSKGLHNVVYGIQRGLGMEVFPV
DLIYRPWKHAEGQLSFIQHSLINPEIFCFADYPCHTVATDILKAPPEDDNREIATWKS
LDLIESLLRLAEVGQYEQVKQLFSFPIKHCPDMLVLALLQINTSWHTLRHELISTLMP
IFLGNHPNSAIILHYAWHGQGQSPSIRQLIMHAMAEWYMRGEQYDQAKLSRILDVAQD
LKALSMLLNGTPFAFVIDLAALASRREYLKLDKWLTAKIREHGEPFIQACMTFLKRRC
PSILGGLAPEKDQPKSAQLPPETLATMLACLQACAGSVSQELSETILTMVANCSNVMN
KARQPPPGVMPKGRPPSASSLDAISPVQIDPLAGMTSLSIGGSAAPHTQSMQGFPPNL
GSAFSTPQSPAKAFPPLSTPNQTTAFSGIGGLSSQLPVGGLGTGSLTGIGTGALGLPA
VNNDPFVQRKLGTSGLNQPTFQQSKMKPSDLSQVWPEANQHFSKEIDDEANSYFQRIY
NHPPHPTMSVDEVLEMLQRFKDSTIKREREVFNCMLRNLFEEYRFFPQYPDKELHITA
CLFGGIIEKGLVTYMALGLALRYVLEALRKPFGSKMYYFGIAALDRFKNRLKDYPQYC
QHLASISHFMQFPHHLQEYIEYGQQSRDPPVKMQGSITTPGSIALAQAQAQAQVPAKA
PLAGQVSTMVTTSTTTTVAKTVTVTRPTGVSFKKDVPPSINTTNIDTLLVATDQTERI
VEPPENIQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYLVMKRVSIEPNFH
SLYSNFLDTLKNPEFNKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNLGHWLGMITL
AKNKPILHTDLDVKSLLLEAYVKGQQELLYVVPFVAKVLESSIRSVVFRPPNPWTMAI
MNVLAELHQEHDLKLNLKFEIEVLCKNLALDINELKPGNLLKDKDRLKNLDEQLSAPK
KDVKQPEELPPITTTTTSTTPATNTTCTATVPPQPQYSYHDINVYSLAGLAPHITLNP
TIPLFQAHPQLKQCVRQAIERAVQELVHPVVDRSIKIAMTTCEQIVRKDFALDSEESR
MRIAAHHMMRNLTAGMAMITCREPLLMSISTNLKNSFASALRVSWLFPWYRYKTYYCL
SVIIFFFVYIWHWALPLILNNHHICLMSSIILDCNSVRQSIMSVCFFFFLLYSQHDV"
BASE COUNT 1426 a 1114 c 1098 g 1373 t
ORIGIN
1 cggagccatt ttgtagagaa acaagcggag ttaaccgaag agggggtcga ggagagccgg
61 agtcggggac ccaggagttt cctgtgtcca gcgctgccgg agccgcctga ggtgccatgt
121 ttcagaacag agtaagaccc ctggtaaaga agaactgaag atattataca gataccagat
181 atagcctaat tacaaagaaa gcattaacct gcctctgagg tgactaaagg ggaataatgg
241 tgattttgcg ccgggctcgg ccgcctgctt ccgccccaac cagcaatgaa tcttgactcg
301 ctctcgctgg ccttgtctca aatcagctac ctggtggaca atttaaccaa gaaaaattac
361 cgagccagcc agcaggaaat acagcatatt gtgaatcggc acggtcctga ggcagacagg
421 catttattac gctgcctatt ttcgcatgtg gatttcagtg gcgatggtaa aagcagtggc
481 aaagatttcc atcagactca gtttctgatt caggagtgtg cgttgctgat tacaaagcca
541 aattttatct cgacgctgtc ctatgccatt gataatccat tgcactatca gaagagttta
601 aagcctgcac cccacttatt tgcccagctg agtaaagtgc tcaaattaag caaagtacaa
661 gaggtaattt ttggccttgc cctgttgaat tcttccagct cagatcttag aggtttcgct
721 gcccagttta tcaaacagaa gcttccagat cttctgcgtt cttacattga cgcagacgtc
781 agtggaaatc aagaaggtgg cttccaagat atagcaatag aggtcctaca cctcctcctc
841 tcccatctcc tctttgggca gaagggagcc tttggagttg gacaagaaca gatagacgct
901 tttcttaaga cgctgcgcag agattttccc caagaacgct gtcccgtggt gctcgcacca
961 cttttatacc ctgaaaaacg ggacattcta atggacagga tcctgcctga ttccggaggg
1021 gtagctaaaa ccatgatgga gagctctttg gctgatttca tgcaagaagt aggctatggc
1081 ttttgtgcaa gtattgaaga atgtcgcaat ataatcgtgc agtttggtgt tcgggaggtc
1141 acagctgccc aggttgcaag ggttttggga atgatggctc gaactcattc agggttaaca
1201 gatggcattc cattacagag tatttctgct ccgggcagtg ggatctggag tgatgggaaa
1261 gataaaagtg atggagcaca ggcacacaca tggaatgtag aagtcttgat tgacgttctt
1321 aaagaactga atccaagttt gaatttcaag gaagtaactt atgaactgga ccatcctgga
1381 tttcaaattc gtgacagtaa aggacttcat aatgtggttt atggcattca gaggggtttg
1441 ggtatggaag tgttcccagt agacctcata tatagacctt ggaaacatgc tgaaggccag
1501 ctctccttca ttcaacattc ccttataaat ccagagatct tctgttttgc tgactatccc
1561 tgtcatactg ttgccactga tattctgaaa gcaccaccag aggatgacaa tcgagaaatt
1621 gccacatgga agagcttgga tttgattgaa tctctgctga ggcttgcaga ggttgggcag
1681 tatgagcaag tcaaacagct cttcagcttc cctatcaaac actgtccaga catgctggta
1741 ttggccttac tacaaattaa cacctcttgg cataccttgc gccatgaact tatctccact
1801 ctgatgccaa ttttccttgg aaaccatcct aactcagcta ttattttgca ctatgcatgg
1861 catgggcagg gacagtctcc ctcaattcgc caacttatca tgcatgcaat ggcagaatgg
1921 tacatgagag gggagcagta tgatcaggcc aaattgtctc gaatacttga tgtggcccag
1981 gacttgaagg ccttgtcaat gctgctaaat ggtactccat ttgcctttgt tattgacctt
2041 gctgcacttg cttcacgtcg tgaatacctc aaacttgata agtggctcac agctaaaatt
2101 cgagagcatg gggagccttt tatccaggcg tgtatgactt ttttaaagag acggtgtcct
2161 tctattttgg gcggacttgc cccagaaaaa gaccagccca aaagtgctca acttcctcca
2221 gaaactttgg cgacaatgtt ggcctgtctg caagcttgtg cagggagtgt ttctcaggag
2281 ctatcagaaa ctatcctcac catggtagcc aattgcagta atgttatgaa taaggccaga
2341 caaccaccac ctggagttat gccaaaagga cgtcctccta gtgctagcag cttagatgcc
2401 atttctcctg ttcagattga ccctcttgct ggaatgacat ctcttagtat aggtggttca
2461 gctgcccctc acacccagag tatgcagggt tttcctccaa atttgggttc tgcattcagt
2521 acccctcagt caccagcaaa agcatttcca cccctttcaa cccccaatca gaccactgca
2581 ttcagtggta ttggaggact ttcatcacag cttccagtag gtggtcttgg cacaggcagc
2641 ctgactggta taggaactgg tgctcttgga ctccctgcag tgaataacga cccttttgta
2701 cagaggaaac tgggcacctc tggactgaat cagcctacat tccagcagag taagatgaaa
2761 ccttcggact tgtctcaggt gtggccagag gcaaaccagc actttagtaa agagatagat
2821 gatgaagcaa acagctattt ccagcgaata tataatcatc caccacatcc aaccatgtct
2881 gttgatgagg tattagaaat gctgcagaga tttaaagact ctactataaa gagggaacga
2941 gaagtattta actgtatgct aaggaacttg tttgaagaat atcgtttttt tccccagtat
3001 cctgataaag agttacatat aacagcctgc ctatttggtg gtataattga gaaaggactg
3061 gtcacttaca tggcactagg tctggctcta cgatatgttc ttgaagcctt acgcaagcct
3121 tttggatcca aaatgtatta tttcgggatt gctgcactag atagatttaa aaacagattg
3181 aaggactatc cccagtattg tcagcatttg gcttctatca gtcactttat gcaatttcca
3241 catcatttac aggagtatat tgagtatgga cagcagtcta gagatcctcc tgtgaaaatg
3301 caaggctcta tcacaacccc tggaagtatt gcactggctc aggcccaggc tcaggcccag
3361 gttccagcaa aagctcctct tgctggtcaa gttagcacta tggtaaccac ctcaacaact
3421 accactgttg ctaaaacggt tacggtcacc aggccaactg gagtcagctt taagaaagat
3481 gtgccacctt ctattaatac tacaaatata gatacgttgc ttgtggccac agatcaaact
3541 gagagaattg tggagccccc agaaaatatc caggagaaaa ttgcttttat tttcaataat
3601 ctctcacagt caaatatgac acaaaaggtt gaagagctaa aggaaacggt gaaagaagaa
3661 tttatgcctt gggtttcaca gtatctggtt atgaagagag tcagtattga gccaaacttt
3721 catagcctgt attcaaactt ccttgacacg ctgaagaatc ctgaatttaa caagatggtt
3781 ctgaatgaga cctacagaaa cattaaagtg ctcctgacct ctgataaagc tgcagccaat
3841 ttctcagatc gttctttgct gaagaacttg ggacattggc taggaatgat cacattagct
3901 aaaaacaaac ccatcttaca cactgacttg gatgtgaaat cattgctgct agaggcttat
3961 gttaaaggac aacaagaatt gctctatgta gtgccctttg ttgccaaagt cttagaatct
4021 agcattcgta gtgtggtttt taggccacca aacccttgga caatggcaat tatgaatgta
4081 ttagctgagc tacatcagga gcatgactta aagttaaact tgaagtttga aatcgaggtt
4141 ctctgcaaga accttgcatt agacatcaat gagctaaaac ctggaaacct cctaaaggat
4201 aaagatcgcc tgaagaattt agatgagcaa ctctctgctc caaagaaaga tgtcaagcag
4261 ccagaagaac tccctcccat cacaaccaca acaacttcta ctacaccagc taccaacacc
4321 acttgtacag ccacggttcc accacagcca cagtacagct accacgacat caatgtctat
4381 tcccttgcgg gcttggcacc acacattact ctgaatccaa caattccctt gtttcaggcc
4441 catccacagt tgaagcagtg tgtgcgtcag gcaattgaac gggctgtcca ggagctggtc
4501 catcctgtgg tggatcgatc aattaagatt gccatgacta cttgtgagca aatagtcagg
4561 aaggattttg ccctggattc ggaggaatct cgaatgcgaa tagcagctca tcacatgatg
4621 cgtaacttga cagctggaat ggctatgatt acatgcaggg aacctttgct catgagcata
4681 tctaccaact taaaaaacag ttttgcctca gcccttcgtg taagttggct atttccttgg
4741 tataggtaca aaacgtatta ctgcttgtct gtaataattt ttttctttgt ctatatatgg
4801 cactgggcgt taccacttat tcttaataat caccatattt gtttgatgtc ttccatcatt
4861 ttagattgta attctgtgag gcaaagcatc atgtctgtgt gttttttttt ttttctgtta
4921 tattctcaac acgatgtttg acagatagta gatacccaaa tatttgttgg tttaaataaa
4981 ttaagattta aaaaggaaaa aaaaaaaaaa a
//