LOCUS BC040500 4489 bp mRNA linear HUM 25-JAN-2007
DEFINITION Homo sapiens DiGeorge syndrome critical region gene 2, mRNA (cDNA
clone MGC:33836 IMAGE:5272271), complete cds.
ACCESSION BC040500
VERSION BC040500.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4489)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 4489)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (29-NOV-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 48 Row: d Column: 23.
FEATURES Location/Qualifiers
source 1..4489
/db_xref="H-InvDB:HIT000052405"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:33836 IMAGE:5272271"
/tissue_type="Testis"
/clone_lib="NIH_MGC_97"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..4489
/gene="DGCR2"
/gene_synonym="DGS-C"
/gene_synonym="IDD"
/gene_synonym="LAN"
/gene_synonym="SEZ-12"
/db_xref="GeneID:9993"
/db_xref="HGNC:HGNC:2845"
/db_xref="MIM:600594"
CDS 244..1896
/gene="DGCR2"
/gene_synonym="DGS-C"
/gene_synonym="IDD"
/gene_synonym="LAN"
/gene_synonym="SEZ-12"
/codon_start=1
/product="DiGeorge syndrome critical region gene 2"
/protein_id="AAH40500.1"
/db_xref="GeneID:9993"
/db_xref="HGNC:HGNC:2845"
/db_xref="MIM:600594"
/translation="MVPKADSGAFLLLFLLVLTVTEPLRPELRCNPGQFACRSGTIQC
IPLPWQCDGWATCEDESDEANCPEVTGEVRPHHGKEAVDPRQGRARGGDPSHFHAVNV
AQPVRFSSFLGKCPTGWHHYEGTASCYRVYLSGENYWDAAQTCQRLNGSLATFSTDQE
LRFVLAQEWDQPERSFGWKDQRKLWVGYQYVITGRNRSLEGRWEVAFKGSSEVFLPPD
PIFASAMSENDNVFCAQLQCFHFPTLRHHDLHSWHAESCYEKSSFLCKRSQTCVDIKD
NVVDEGFYFTPKGDDPCLSCTCHGGEPEMCVAALCERPQGCQQYRKDPKECCKFMCLD
PDGNSLFDSMASGMRLVVSCISSFLILSLLLFMVHRLRQRRRERIESLIGANLHHFNL
GRRIPGFDYGPDGFGTGLTPLHLSDDGEGGTFHFHDPPPPYTAYKYPDIGQPDDPPPP
YEASIHPDSVFYDPADDDAFEPVEVSLPAPGDGGSEGALLRRLEQPLPTAGASLADLE
DSADSSSAMLVPPDPAQSGSTPAAEALPGGGRHSRSSLNTVV"
BASE COUNT 821 a 1347 c 1358 g 963 t
ORIGIN
1 ggggtggcgc ggcgcggagc cgagcaggac ggccgccatc ttgcgcgcag ctggagtcgg
61 tgcctgaggt tgcagccgag agagtgcgcc agcccgcggc ccagccgaag ctctttcccg
121 ccgcctctcc gcgcctcgcc caggttcagc tccgcctgac cctccgcttg gcacggtccc
181 ctgaccctca gtccggcctg gtccggcctt ccagccgccc cggggacgat gaacggagga
241 taaatggtgc ccaaggcaga cagcggcgcc ttcctgctgc tcttcctgct cgtgctcact
301 gtcaccgagc cgctgcggcc agagctgcgg tgcaaccctg ggcagtttgc gtgtcgcagc
361 ggcaccatcc agtgcatccc cctcccctgg cagtgtgacg gctgggcgac ttgcgaggat
421 gagagcgacg aagccaactg tccagaagtg accggggagg tgcgtcctca tcatgggaag
481 gaggctgtgg atccgcggca ggggcgggcc agaggaggcg acccttcgca cttccacgcg
541 gtgaacgtgg cgcagcccgt tcgcttcagc agtttcctag ggaagtgccc gacagggtgg
601 caccactacg aaggcacggc cagctgctac cgggtctacc tgagcgggga gaactactgg
661 gatgccgcgc agacctgcca gcgcctgaat ggctctctcg ccaccttctc cactgaccag
721 gagctgcgct ttgtcctggc ccaggaatgg gaccagcccg agcggagctt tggttggaag
781 gaccagcgca agttgtgggt tggctatcag tatgttatca ctggccggaa ccgctccttg
841 gaaggtcgct gggaggtggc attcaaaggc tcttcagagg tgttcctgcc cccagacccc
901 atctttgcct cggccatgtc tgagaacgac aacgtgttct gtgcccagct tcagtgcttc
961 catttcccca ccctgcggca ccacgacctc cacagctggc acgccgagag ctgctacgag
1021 aagtcttcat ttctgtgtaa aagaagtcaa acatgtgttg acatcaagga caacgtggtg
1081 gatgaagggt tctacttcac ccctaagggg gacgacccat gcctgagctg cacctgccat
1141 ggaggggagc ctgagatgtg tgtggctgct ctctgtgaga ggccccaggg ctgccaacag
1201 taccgcaagg accccaaaga gtgctgcaag ttcatgtgtc tggacccaga tggcaacagt
1261 ctgtttgact ccatggccag cgggatgcgc ctggtcgtca gctgcatctc ctccttcctc
1321 atcctgtcac tgctgctctt catggtccac cggctgcgcc agcggcgccg ggagcgcatc
1381 gagtccctga ttggagcaaa cttgcaccac ttcaacctcg gccgcaggat ccctggcttt
1441 gattacggcc cagacgggtt tggcacgggc ctcacgccgc tgcatctttc tgacgacgga
1501 gagggtggga ctttccattt ccacgaccct ccacctccct acacggcata caagtacccg
1561 gacatcggcc agcccgacga ccctccgccg ccctacgagg cctccatcca cccggacagt
1621 gtgttctatg accctgcaga cgatgatgct tttgagcctg tggaggtcag cctgccagcc
1681 cctggggatg gtgggagtga aggtgcatta ctccggcgcc tggagcagcc tctgcccact
1741 gcgggggcct ctctggcaga cctggaagac tctgccgaca gcagcagcgc catgctcgtg
1801 ccccctgacc ctgcccagag cgggagcacc ccagctgcag aggcactgcc agggggtggc
1861 cgccacagcc gcagctccct caatactgtg gtgtagacgg cctggcctgt accccaacgg
1921 tctgggagca cctgtctgtt gtagaaaaca ccggtccctg gggagacttg aaaggcccct
1981 gtcccagcct ggacgccacg cactgccgca cgtcactggc gggctcgcgt gtgtacatag
2041 agaccacagc ccgccttctg ccaaaagaag tgatggcctg caccgagctt ccttgagggc
2101 ttcagaaaca tgcatagctt tggatcactg tcttctcctt tataaatggc agaagagtga
2161 caaaattcat tcagaccgca catgttagag gcagggaatg aagaaggtac tgtgggccat
2221 ggccacacct gatgcgtttt tggtgggctt acttggtgca gtgtgctgtc cagagagacc
2281 tgctgaccca gtctgggaca ggcacagtgg gagctgccac agtgcccctt gctggccgcc
2341 ctcaggaggg ggcctctgga ccgtcagtgt ggcgtaggca gtgggtctgc ttcagggagg
2401 cagcctcttg actttgtcac aacggttgca ctgaagatgg cccccacaag cccagttgtg
2461 aatatcaagg tgaccctgcc cctggctggg agctcccctg gggctctgga acctgaagcc
2521 ctgagaagga gagcttggaa ggaggttgag ctcttcactg tgtctttcca tctgggctct
2581 gcagcccagc tctgtggcag gaggcctgac cccaccccat cagtccctct cccagcattg
2641 ctgtgcatgg ctccctcagg aagaagctct ggagtggggc cgaggcccca gatgctctgc
2701 tggggtctgg ggactgagct gcctcctgtc tctccactct ggagccctgg gctcttgcct
2761 cctgttgaat tgcccctggg cctgcccccg gccccatttg tgccataaag ggttgcttca
2821 ttgcaggagg ggtggctgaa accaccatcc tgggctgcat ctatctcctt aaagtccact
2881 ccttacatca ccgccactac tgcagctcag tgcccagcgg ccgcatgcac acctcccggc
2941 ccctcctcag cagcgcaggg gctgggggcc cttcctggca cccttttgcc tgacggaccc
3001 tgttgcctgc tcctgggcag tggttttgtt gcctgacaca gggcctttaa catttctgag
3061 gtttggagat taagcgggtt ctgtgcgatt tttagcacat ccatatcttt tctacgttga
3121 atgtctggat ctttcctttg tatgtttgtg tctctgtgtg tgtatgtggc caagcgtctg
3181 caggtgaggg tggcacatgg aacttcacgg gtcactgggg gcccactctt ccagggtcat
3241 cgatgcatcc tgggctgtgc tgaggcagtg ctgtctcgct cagtctttcc agaccagcgg
3301 ggcagcacct gggaggcctg tctgaagcat gcagttctgt ggtgctgctc ggggatggac
3361 tccatgcaca gtccacttct tgacacattc tcacactgtg gctggagacc cattttttcc
3421 atcccatgtg gaatgagaat cttgagttgc ccacagacag acttgacctt tgtgccagaa
3481 ctgtccagag ctgtgagttt tgttactgaa ttgcctgtcc ctgagcttgg cctgctggag
3541 catgatgctg gaggctgtgt gcgggcaggc ttgtgctccc cttggagaag ggctgctact
3601 taacaaggaa gtcctggcca caggagtccc ctactggctg cagaggacga agcaggaagc
3661 atgccgtgga tcccacatgc actggggcag ggcagccagg ttccagagca gcaggcatgt
3721 gcattatggg tgccaggtgg ccagtgaggg cccgaggacc acgcagcaga gtcccccacg
3781 ggcctgagcc tgagagctca gaggattcct gccaggcctc agaactgtgt gtgcgggaca
3841 gggtggctgg cacgagatgt gtgggactgg gacgcttcct ttggggacca gaggaacatt
3901 aggggccggt cagacacgta gggggcagtg aggaaacggg gtaaagtgga ccatgcaggc
3961 tgcagagggt gggccttggg ctggccgggg ttgctgggtg gccccttccc catgggcctc
4021 cacaagcact caggccactg gcacgttggg ccaggcagaa ggtccacatg gcagggctgc
4081 ctggaacacc gctgccactg tggctccagg aggcccttgg gagcatgagg agagctggac
4141 tcgctcatct gttcttgcac caccatccag aatgccccct ttgcaaggcc tgctgcagtc
4201 cccagtctga ccagcaagtc ccggggtcac ccttgctgaa ccttgtgctc caggggtcct
4261 cctcctctag gaccagcttg ccacggtttc tcagagccca ggtgccctct gacctgccat
4321 gcggaggtgg gatttgatac tgtacattgt cttgatgcct gtttttttat gttttcatta
4381 agggttttta gtttttggtt gggttgacac taacttttct taagatgctg tgagaatcat
4441 ttcatccaaa tgccaaataa acttgtgttc cggaaaaaaa aaaaaaaaa
//